BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0108.p         (98 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IXK2.1 D8IXK2_HERSS Periplasmic protein TonB, links inner and ...   199   9e-50
A6D8W5.1 A6D8W5_9VIBR Putative TonB2 protein                           64   5e-09
E1SNE4.1 E1SNE4_FERBD TonB family protein                              64   6e-09

>D8IXK2.1 D8IXK2_HERSS Periplasmic protein TonB, links inner and outer
           membranes, protein
          Length = 238

 Score =  199 bits (507), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/98 (98%), Positives = 98/98 (100%)

Query: 1   VAAAPAPKAQPGEIRRGLVPLRRVEPEYPPKALASNTEGVVVAHVSIEKDGSVSAVQIVR 60
           VAAAPAPKAQPGE+RRGLVPLRRVEPEYPPKALASNTEGVVVAHVSIEKDGSVSAVQIVR
Sbjct: 141 VAAAPAPKAQPGEVRRGLVPLRRVEPEYPPKALASNTEGVVVAHVSIEKDGSVSAVQIVR 200

Query: 61  AQPAKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN 98
           AQPAKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN
Sbjct: 201 AQPAKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN 238


>A6D8W5.1 A6D8W5_9VIBR Putative TonB2 protein
          Length = 208

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 6/87 (6%)

Query: 18  LVPLRRVEPEYPPKALASNTEGVVVAHVSIEKDGSVSAVQIVRAQPAKLFDQAATKALMQ 77
           ++PL R EP YP +AL  N EG VV   +I++ G  + VQ+V A+P ++F++ A  AL Q
Sbjct: 121 VMPLHRKEPRYPRRALQRNVEGYVVMSFTIDESGRPTDVQVVEAKPRRMFEREAMVALKQ 180

Query: 78  WKF-----SRTDEPVLGE-VELRFSLN 98
           WK+     +    P +G+ V+L F LN
Sbjct: 181 WKYQPMIVNGKATPRIGQTVKLEFKLN 207


>E1SNE4.1 E1SNE4_FERBD TonB family protein
          Length = 205

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 13/83 (15%)

Query: 11  PGEIRRGL-------------VPLRRVEPEYPPKALASNTEGVVVAHVSIEKDGSVSAVQ 57
           PG+I+ G+             +PL RVEP YP +AL    EG V+   +I++ G    ++
Sbjct: 98  PGDIQIGMPAKADLATADRQAMPLYRVEPAYPQRALRMRAEGYVLMEFTIDEQGRPRNIR 157

Query: 58  IVRAQPAKLFDQAATKALMQWKF 80
           ++ ++P +LFDQAA KAL +WK+
Sbjct: 158 VIESEPVRLFDQAAMKALARWKY 180