BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0175.p (137 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1583 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso R... 170 7e-43 PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae Ps... 144 4e-35 NMB0729 [L] COG0776 Bacterial nucleoid DNA-binding protein Nme N... 143 1e-34 NMA0938 [L] COG0776 Bacterial nucleoid DNA-binding protein NmA N... 143 1e-34 VC1222 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vi... 142 2e-34 YPO2427 [L] COG0776 Bacterial nucleoid DNA-binding protein Ype Y... 141 5e-34 himA [L] COG0776 Bacterial nucleoid DNA-binding protein Eco Esch... 139 1e-33 ZhimA [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ Esc... 139 1e-33 ECs2419 [L] COG0776 Bacterial nucleoid DNA-binding protein Ecs E... 139 1e-33 STM1339 [L] COG0776 Bacterial nucleoid DNA-binding protein Sty S... 139 1e-33 >RSc1583 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso Ralstonia solanacearum Length = 104 Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 81/93 (87%), Positives = 88/93 (94%) Query: 34 LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93 +PTLTKAELAE+LFEQVGLNKRE+KDMVE FFD IR ALE+G++VKLSGFGNFQLRDKPQ Sbjct: 1 MPTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQ 60 Query: 94 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126 RPGRNPKTGE IPITARRVVTFHASQKLK +VE Sbjct: 61 RPGRNPKTGEIIPITARRVVTFHASQKLKALVE 93 >PA2738 [L] COG0776 Bacterial nucleoid DNA-binding protein Pae Pseudomonas aeruginosa Length = 100 Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/98 (72%), Positives = 81/98 (82%) Query: 34 LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93 + LTKAE+AE L+E++GLNKREAK++VE FF+EIR ALE E VKLSGFGNF LRDK Q Sbjct: 1 MGALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQ 60 Query: 94 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGS 131 RPGRNPKTGEEIPITARRVVTF QKLK VE +G+ Sbjct: 61 RPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGT 98 >NMB0729 [L] COG0776 Bacterial nucleoid DNA-binding protein Nme Neisseria meningitidis MC58 Length = 100 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 68/92 (73%), Positives = 81/92 (88%), Gaps = 1/92 (1%) Query: 36 TLTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 94 TLTKAELA++L ++V + K +AK++VE FF+EIR+ L GE +K+SGFGNFQLRDKPQR Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 95 PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126 PGRNPKTGEE+PITARRVVTFHASQKLK MVE Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93 >NMA0938 [L] COG0776 Bacterial nucleoid DNA-binding protein NmA Neisseria meningitidis Z2491 Length = 100 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 68/92 (73%), Positives = 81/92 (88%), Gaps = 1/92 (1%) Query: 36 TLTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 94 TLTKAELA++L ++V + K +AK++VE FF+EIR+ L GE +K+SGFGNFQLRDKPQR Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 95 PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 126 PGRNPKTGEE+PITARRVVTFHASQKLK MVE Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93 >VC1222 [L] COG0776 Bacterial nucleoid DNA-binding protein Vch Vibrio cholerae Length = 98 Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/90 (77%), Positives = 77/90 (85%) Query: 37 LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 96 LTKAELAE LFEQ+G++KR+AKD VE FF+EIR ALE GE VKLSGFGNF LRDK +RPG Sbjct: 3 LTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62 Query: 97 RNPKTGEEIPITARRVVTFHASQKLKEMVE 126 RNPKTGE+IPITARRVVTF QKLK VE Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVE 92 >YPO2427 [L] COG0776 Bacterial nucleoid DNA-binding protein Ype Yersinia pestis Length = 98 Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 71/98 (72%), Positives = 82/98 (83%), Gaps = 2/98 (2%) Query: 37 LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 96 LTKAE++E LFE++GL+KR+AKD+VE FF+E+R ALE GE VKLSGFGNF LRDK QRPG Sbjct: 3 LTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62 Query: 97 RNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVE 134 RNPKTGE+IPITARRVVTF QKLK VE S +P E Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE--SATPKE 98 >himA [L] COG0776 Bacterial nucleoid DNA-binding protein Eco Escherichia coli K12 Length = 99 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/94 (72%), Positives = 80/94 (85%) Query: 36 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 95 LTKAE++E LF+++GL+KR+AK++VE FF+EIR ALE GE VKLSGFGNF LRDK QRP Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 96 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSS 129 GRNPKTGE+IPITARRVVTF QKLK VE +S Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 >ZhimA [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ Escherichia coli O157:H7 EDL933 Length = 99 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/94 (72%), Positives = 80/94 (85%) Query: 36 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 95 LTKAE++E LF+++GL+KR+AK++VE FF+EIR ALE GE VKLSGFGNF LRDK QRP Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 96 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSS 129 GRNPKTGE+IPITARRVVTF QKLK VE +S Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 >ECs2419 [L] COG0776 Bacterial nucleoid DNA-binding protein Ecs Escherichia coli O157:H7 Length = 99 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/94 (72%), Positives = 80/94 (85%) Query: 36 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 95 LTKAE++E LF+++GL+KR+AK++VE FF+EIR ALE GE VKLSGFGNF LRDK QRP Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 96 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSS 129 GRNPKTGE+IPITARRVVTF QKLK VE +S Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 >STM1339 [L] COG0776 Bacterial nucleoid DNA-binding protein Sty Salmonella typhimurium LT2 Length = 99 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/94 (72%), Positives = 80/94 (85%) Query: 36 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 95 LTKAE++E LF+++GL+KR+AK++VE FF+EIR ALE GE VKLSGFGNF LRDK QRP Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 96 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSS 129 GRNPKTGE+IPITARRVVTF QKLK VE +S Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95