BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0123.p (175 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 292 2e-79 VC2467 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 213 2e-55 YPO2711 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 211 6e-55 PA0762 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 210 1e-54 rpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma s... 209 2e-54 ZrpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma ... 209 2e-54 ECs3439 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 209 2e-54 STM2640 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 208 4e-54 PM1789 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 195 4e-50 HI0628 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 194 8e-50 >RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Rso Ralstonia solanacearum Length = 199 Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/175 (80%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVVKY RK++RL+SRL+RD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVVKYHRKIIRLISRLIRDAAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRR +ST+ D EEAETF D + LRDINTP+SML TKQ+A+TVN AMEALPEEL Sbjct: 85 NYLATQGRRPESSTDIDTEEAETFADGEQLRDINTPDSMLHTKQVAETVNRAMEALPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+AM CPIGTVRSRIFRAREAIAEKLRPLL TA KRW Sbjct: 145 RTAITLREIEGLSYEEIAEAMECPIGTVRSRIFRAREAIAEKLRPLLGTAEGKRW 199 >VC2467 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Vch Vibrio cholerae Length = 190 Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 96/167 (57%), Positives = 136/167 (81%), Gaps = 1/167 (0%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV++YQ K+ L+SR V + + DV QEAFIKAYRA+P FRG+SAFYTWLYRI +NTAK Sbjct: 25 LVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 N++V RR P S + DAEEAE ++ D L++++ PE++ +K++ +TV A++ALP++L Sbjct: 85 NHIVAQSRRPPAS-DVDAEEAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDL 143 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 +TA+TLRE++GLSY+EIA+ M+CP+GTVRSRIFRAREA+ +K++PLL Sbjct: 144 KTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKIKPLL 190 >YPO2711 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Ype Yersinia pestis Length = 191 Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 101/167 (60%), Positives = 134/167 (80%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV++YQ K+ LVSR V Q + DVVQE+FIKAYRAL FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVIRYQHKVASLVSRYV-PQGDVPDVVQESFIKAYRALESFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLV GRR P+S + DA +AE +++A L++I+ PE+++ ++++ Q V +E+LPE+L Sbjct: 84 NYLVAQGRRPPSS-DVDANDAENYENAGALKEISNPENLMLSEELRQIVFKTIESLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 R AITLRE++GLSY+EIA M+CP+GTVRSRIFRAREAI K++PL+ Sbjct: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 >PA0762 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Pae Pseudomonas aeruginosa Length = 193 Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/170 (61%), Positives = 128/170 (75%), Gaps = 1/170 (0%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQ K++ L+ R V D EA+DV QEAFIKAYRAL FRGDSAFYTWLYRI INTAK Sbjct: 25 LVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 N+LV GRR P S + AE+AE F+ L+DI +PE + +I TV+ ++ LPE+L Sbjct: 85 NHLVARGRRPPDS-DVTAEDAEFFEGDHALKDIESPERAMLRDEIEATVHQTIQQLPEDL 143 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTA 170 RTA+TLRE EGLSY++IA M CP+GTVRSRIFRAREAI + L+PLL A Sbjct: 144 RTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRAREAIDKALQPLLREA 193 >rpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Eco Escherichia coli K12 Length = 191 Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVV+YQ K+ LVSR V + DVVQEAFIKAYRAL FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLV GRR P+S + DA EAE F+ L++I+ PE+++ ++++ Q V +E+LPE+L Sbjct: 84 NYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 R AITLRE++GLSY+EIA M+CP+GTVRSRIFRAREAI K++PL+ Sbjct: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 >ZrpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog EcZ Escherichia coli O157:H7 EDL933 Length = 191 Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVV+YQ K+ LVSR V + DVVQEAFIKAYRAL FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLV GRR P+S + DA EAE F+ L++I+ PE+++ ++++ Q V +E+LPE+L Sbjct: 84 NYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 R AITLRE++GLSY+EIA M+CP+GTVRSRIFRAREAI K++PL+ Sbjct: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 >ECs3439 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Ecs Escherichia coli O157:H7 Length = 191 Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVV+YQ K+ LVSR V + DVVQEAFIKAYRAL FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLV GRR P+S + DA EAE F+ L++I+ PE+++ ++++ Q V +E+LPE+L Sbjct: 84 NYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 R AITLRE++GLSY+EIA M+CP+GTVRSRIFRAREAI K++PL+ Sbjct: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 >STM2640 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Sty Salmonella typhimurium LT2 Length = 191 Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 102/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVV+YQ K+ LVSR V + DVVQE+FIKAYRAL FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVVRYQHKVASLVSRYV-PSGDVPDVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLV GRR P+S + DA EAE F+ L++I+ PE+++ ++++ Q V +E+LPE+L Sbjct: 84 NYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 R AITLRE++GLSY+EIA M+CP+GTVRSRIFRAREAI K++PL+ Sbjct: 143 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 189 >PM1789 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Pmu Pasteurella multocida Length = 191 Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 95/167 (56%), Positives = 127/167 (76%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV +YQ K+ L++R V Q + DVVQE+FIKAYR++ FRGDSAFYTWLYRI +NTAK Sbjct: 25 LVSRYQNKVAGLLTRYV-SQNDIPDVVQESFIKAYRSIDSFRGDSAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL GRR P + AEEAE+++ +LRD++TPE+ + + ++ + V + L E+L Sbjct: 84 NYLTAQGRRPPNE-DILAEEAESYEMGSNLRDVDTPENEMLSSELKKIVFDTINGLQEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 RTAITLRE+EGLSY+EIA+ M+CP+GTVRSRIFRARE I K++P+L Sbjct: 143 RTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREIIESKVQPML 189 >HI0628 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Hin Haemophilus influenzae Length = 189 Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 93/167 (55%), Positives = 127/167 (76%), Gaps = 2/167 (1%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV +YQ K+ L++R V + + DVVQE+FIKAYR++ FRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSRYQNKVAGLLTRYV-SRNDIPDVVQESFIKAYRSIESFRGESAFYTWLYRIAVNTAK 83 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL GRR P + AE+AE +D HLRD++TPE+ + + ++ + V + LPE+L Sbjct: 84 NYLTAQGRRPPNE-DILAEDAENYDVGTHLRDVDTPENEMLSSELERIVFDTIHNLPEDL 142 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLL 167 +TAITLRE+EGLSY++IA+ M+CP+GTVRSRIFRARE I K++PL+ Sbjct: 143 KTAITLRELEGLSYEDIAEIMDCPVGTVRSRIFRAREMIENKIQPLM 189