BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0106.p (626 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3258_1 [T] COG2200 FOG Pae Pseudomonas aeruginosa 229 1e-59 VC1592 [T] COG2200 FOG Vch Vibrio cholerae 193 9e-49 PA3258_3 [T] COG2199 FOG Pae Pseudomonas aeruginosa 182 2e-45 CAC2702_1 [T] COG2200 FOG Cac Clostridium acetobutylicum 164 6e-40 RSp0281 [T] COG2199 FOG Rso Ralstonia solanacearum 151 4e-36 AGc1510_1 [T] COG2200 FOG Atu Agrobacterium tumefaciens strain C... 133 1e-30 VC1641 [T] COG2200 FOG Vch Vibrio cholerae 125 4e-28 SMc00033_1 [T] COG2200 FOG Sme Sinorhizobium meliloti 125 4e-28 CC3148 [T] COG2200 FOG Ccr Caulobacter vibrioides 120 1e-26 aq_367_3 [T] COG2200 FOG Aae Aquifex aeolicus 110 8e-24 >PA3258_1 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 270 Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/258 (48%), Positives = 163/258 (63%), Gaps = 6/258 (2%) Query: 26 TMSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFK 85 +M+ TE LS L I+A L LFQPI+ + ++GYE L RGPSN+PLHSPLALF Sbjct: 19 SMTVTEQ--LSALDSILAHGDLHCLFQPILSLSERRLVGYEALTRGPSNSPLHSPLALFA 76 Query: 86 VARAHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGV 145 VAR ++E LCR +RF + LFLN+SP +L++ G TL+ L LG+ Sbjct: 77 VARQCGRLSELELLCRQRAFSRFRDIQGDAMLFLNISPESLLEAGHPPGRTLQLLQQLGI 136 Query: 146 NPQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKV 205 +P R++IELTE P D+ L A HYR MGF IA+DDLG G+SSLRLWSEL+P+YVK+ Sbjct: 137 SPNRVVIELTEQTPIDDFDLLDTALHHYRSMGFSIALDDLGAGYSSLRLWSELRPDYVKI 196 Query: 206 DMHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHIS 265 D HFV GI+ D +K +FV SI ++A S + VIAEGIE EL + ++G+ QGY Sbjct: 197 DRHFVDGIHLDTVKREFVGSILKMARASRAQVIAEGIELPEELAVLSEMGVDLVQGYLFG 256 Query: 266 RPLPEPPVSISDDVTKTL 283 RP P + DV + L Sbjct: 257 RPQEHP----ASDVQQML 270 >VC1592 [T] COG2200 FOG Vch Vibrio cholerae Length = 284 Score = 193 bits (491), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 150/239 (62%) Query: 33 PMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNM 92 P + L +I+ ++++T LFQPIV + + +GYE L RGP +PLH+ +LF+ A Sbjct: 6 PYQNELSDILRKQRITPLFQPIVHLASERAIGYESLSRGPQQSPLHTAGSLFEAAEQCQR 65 Query: 93 SVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIII 152 ++E +C H ++ G+ LF+N+SP L+ + Q E + + ++ +++ Sbjct: 66 LPELEKICVHKAAAAWSSFGIDSQLFINLSPDMLLHSQQHQWELPQLMQRHRLSANQVVF 125 Query: 153 ELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQG 212 E++E P +L+N+ H + GF IAIDD+G G+S L+LWSELQP++VK+D +F+ Sbjct: 126 EISERTPALQLDELKNSVQHLQAQGFSIAIDDMGSGYSGLKLWSELQPDFVKIDRYFIHN 185 Query: 213 INHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLPEP 271 I+ +P+KL+FVRS+ ++AE+ +IAEG+E+++ELL I DLGI QGY RP P Sbjct: 186 IDSNPIKLKFVRSLVQLAEQLDCQLIAEGVETRSELLAIADLGIELVQGYLFGRPQLTP 244 >PA3258_3 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 201 Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/197 (45%), Positives = 125/197 (63%), Gaps = 2/197 (1%) Query: 417 GLGTGHDLLREITQMQIDAARHANPLTQLPGNVPINDHIEYLLQSGVEFCICYCDLDQFK 476 G+G D+LR IT+ ++ ARHANPLT LPGNVPI +E LLQ E ICY D+D FK Sbjct: 1 GMGRVIDVLRLITEEKLQQARHANPLTLLPGNVPIQQCLERLLQQRREAVICYIDVDSFK 60 Query: 477 PFNDVYGYRKGDDMIQATGRVLQQACDPELDFIGHIGGDDFLILFQSEDWEKRCRSMLDN 536 PFND+YGY +GD+++ + L + DP DF+GHIGGDDF+++ EDW R +L+ Sbjct: 61 PFNDLYGYARGDEVLLCLAQCLSERIDPGSDFVGHIGGDDFMLVLGPEDWRTRIDRLLET 120 Query: 537 FDAETRGFYYDEDVERGGYYTEDRQGNRVFHKLVSVSLGAVKI--EPSQYSSPHQIASAA 594 F ++ R FY E +E G + +R G R + L+S+S+G V + E Q +A+ A Sbjct: 121 FQSQCRRFYSREHLEAGCFVAHNRHGQREEYPLLSLSVGVVHLPAEACQGMDAAHLATLA 180 Query: 595 TRAKKQAKKIPGNSLFI 611 + AK+QAK +PG SL + Sbjct: 181 SEAKRQAKAVPGYSLHL 197 >CAC2702_1 [T] COG2200 FOG Cac Clostridium acetobutylicum Length = 269 Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 3/265 (1%) Query: 34 MLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNMS 93 +L + +I+ +T LFQPI+ + + ILGYE L RGP ++PL+ P LF A+ +N + Sbjct: 3 ILCEIEKILKNMNITTLFQPIISLSDCRILGYEALSRGPIDSPLYLPSDLFSAAKKYNKT 62 Query: 94 VQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIE 153 ++E CR + L LF+NV P + + YL ++P+ II E Sbjct: 63 WELELACRVTAIKNSKTLSPDKFLFINVDPEIIKSQNFQTSFSKEYLAKYNISPKNIIFE 122 Query: 154 LTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGI 213 +TE DY +Y G++IA+DD G G+S L+ SE +P Y+K+D+ + I Sbjct: 123 ITERTAISDYKAFSKILKNYTSQGYKIALDDTGSGYSGLQTISETKPHYIKLDIELIHNI 182 Query: 214 NHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRP---LPE 270 + + K V+S + ++ + +IAEGIE++ EL + DLG+ GQG+ IS+P E Sbjct: 183 DRNNFKKLLVKSFVDFSKAAKLKLIAEGIETEGELKVLIDLGVYAGQGFFISKPNHDFCE 242 Query: 271 PPVSISDDVTKTLRRDKVPLDAKKY 295 P S+ + + K + +KY Sbjct: 243 IPESVKKIIITYNKLKKDYFNFRKY 267 >RSp0281 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 245 Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 14/209 (6%) Query: 376 DPNPILTEQSTSLQDLSNLLV-HA-ESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQ- 432 P P T + T + L + HA +H L+ F + G ++R + Q Sbjct: 14 SPEPSRTGRRTLGESACRLPIRHAIPAHRLAGAFAL-----------GRAVIRCGNRRQH 62 Query: 433 IDAARHANPLTQLPGNVPINDHIEYLLQSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQ 492 + A + A Q P N+P+N HIE LL++ EF CY DL+ FKPFND YGY +GD+M++ Sbjct: 63 LPARKCAWRNRQRPSNIPLNLHIERLLEARAEFVACYVDLNHFKPFNDQYGYWQGDEMLK 122 Query: 493 ATGRVLQQACDPELDFIGHIGGDDFLILFQSEDWEKRCRSMLDNFDAETRGFYYDEDVER 552 VL AC+P DF+GH+GGDDFL+LFQS DW R + + F++ Y D Sbjct: 123 MAAVVLAAACEPTRDFLGHVGGDDFLVLFQSADWRTRIQRAMAAFNSSALAKYTPADRAA 182 Query: 553 GGYYTEDRQGNRVFHKLVSVSLGAVKIEP 581 GG + EDR+G F + V++++GA+++ P Sbjct: 183 GGIHAEDRKGLPAFFRCVAMAVGALQVRP 211 >AGc1510_1 [T] COG2200 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 286 Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 14/253 (5%) Query: 17 DLIARAAGGTMSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTP 76 D+I R A G M PM L+ L FQPIV G I GYE L+RG Sbjct: 9 DVIRRFASGQMF----PMAKLV--------LETAFQPIVEATTGTIFGYESLMRGHDRLG 56 Query: 77 LHSPLALFKVARAHNMSVQMEYLCRHIVLTRFAQLG--LPGNLFLNVSPGALMQPEAIQG 134 SPLAL A A E + L +F+ L LFLN+ + + I Sbjct: 57 FSSPLALLDQAAADGELKAFEQMLASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILD 116 Query: 135 ETLRYLDTLGVNPQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRL 194 + + +L G+ I EL+E + + R GF++AIDD G G ++L Sbjct: 117 KLVGHLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGFKLAIDDFGAGHGEMKL 176 Query: 195 WSELQPEYVKVDMHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDL 254 + +Y+K+D HF+ GI+H P K VR+I IA G VIAEGIE++AE L+ R+ Sbjct: 177 LCDFPLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREF 236 Query: 255 GIACGQGYHISRP 267 G+ QG+ I++P Sbjct: 237 GVDLVQGWLIAKP 249 >VC1641 [T] COG2200 FOG Vch Vibrio cholerae Length = 257 Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 4/221 (1%) Query: 47 LTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNMSVQMEYLCRHIVLT 106 T FQPIV R EI GYE L+RG +N +S ++ + + +CR + Sbjct: 26 FTMAFQPIVNCRTKEIFGYEALVRGLNNESAYSVISRVN----EDNRYLFDQMCRVKAIA 81 Query: 107 RFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEPTYDYAQL 166 A+LGL L +N P A+ PE TL + I+ E TE E D + Sbjct: 82 LAAKLGLTSKLSINFLPNAIYVPERCIRTTLEAAKRYQFPIENIMFEFTEAERVEDVNHI 141 Query: 167 RNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVRSI 226 + +Y+ +GFQ AIDD G G+S L L ++ Q VKVDM ++ I+ D ++ +++ Sbjct: 142 KRIVEYYKSLGFQTAIDDFGSGYSGLNLLADFQTNIVKVDMGLIRNIHADQVRQSIMKNC 201 Query: 227 QEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRP 267 ++ +AEG+ES AE ++ G+ QGY+ ++P Sbjct: 202 LKLFSDLNIQPLAEGVESHAEFAWLKAAGVELMQGYYFAKP 242 >SMc00033_1 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 286 Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 104/219 (47%), Gaps = 2/219 (0%) Query: 51 FQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNMSVQMEYLCRHIVLTRFAQ 110 QPIV G + GYE L+RG SP+ L A A + +E+L + FA Sbjct: 31 LQPIVEATTGAVFGYESLMRGFERLGFASPVELLDKAEAAGQLLALEHLINSRAVAAFAT 90 Query: 111 LG--LPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEPTYDYAQLRN 168 L LFLN + I + +L + P + EL+E + Sbjct: 91 LPDFSARTLFLNFDARLIGGEGDIVERLVSHLKRANIAPSSLCFELSERFDSSKMPDFPV 150 Query: 169 AAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVRSIQE 228 R GF++AIDD G GFS L+L + +YVK+D HFV I+ D K VR Sbjct: 151 LVRQLRLAGFKLAIDDFGAGFSGLKLLCDQPVDYVKIDRHFVSEIDKDARKRHLVRHTVN 210 Query: 229 IAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRP 267 +A G+ VIAEG+E++AE L RDLG QGY I+RP Sbjct: 211 MAHALGTRVIAEGVETEAEFLVCRDLGCDLMQGYFIARP 249 >CC3148 [T] COG2200 FOG Ccr Caulobacter vibrioides Length = 304 Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 16/227 (7%) Query: 51 FQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNMSVQMEYL----CRHIVLT 106 FQPIV++ +GE+ +E L RG + L+ +S Q Y+ CR + Sbjct: 57 FQPIVKLSSGEVFAHEALARGAEGQGAGTVLS--------TISDQNRYVFDQQCRVKAIE 108 Query: 107 RFAQLGLP---GNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEPTYDY 163 L LP NL +N P A+ +P A TL G R+I E TENE D Sbjct: 109 LATTLDLPQGGANLSINFMPNAVYEPRACIRLTLATAMRTGFPLNRLIFEFTENE-QLDI 167 Query: 164 AQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFV 223 + N YR MGF+ AIDD G G++ L L+++ QP+ VK+DM ++ I+ D K V Sbjct: 168 QHVLNILRTYRAMGFKTAIDDFGAGYAGLNLFAKYQPDIVKLDMDLIRDIDSDRGKRVIV 227 Query: 224 RSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLPE 270 ++ + + + EG+E+ EL +RDLG+ QGY I++P+ E Sbjct: 228 SNLLRMLTELEIFAVCEGVETMDELSALRDLGVDYVQGYVIAKPVFE 274 >aq_367_3 [T] COG2200 FOG Aae Aquifex aeolicus Length = 250 Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 126/245 (51%), Gaps = 7/245 (2%) Query: 30 TEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIR-GPSNTPLHSPLALFKVAR 88 T+ ML L + + +R + FQPIV +++GE+ E L+R G N P + A Sbjct: 12 TKKSMLVL--DALNKRLIKPFFQPIVELKSGELFANEVLMRIGKENIPASE---FIEAAE 66 Query: 89 AHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQ 148 + V+M+ + L + + +F+N+S AL + ++ LR ++ G +P Sbjct: 67 NLGVIVRMDLILYEETLKKLVEEQYDKYVFMNLSSRALTSEDFLKN-ILRIVENSGFDPA 125 Query: 149 RIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMH 208 +I+ ELTE E + ++ +++G + AIDD G G+SS ++ ++VK++ Sbjct: 126 KIVFELTERESVKNIDLVKRFLEELKEVGIKFAIDDFGSGYSSFHYLKKIPVDFVKIEGE 185 Query: 209 FVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPL 268 FV+G D F+ SI +A+ +AE IE++ ++++G+ GQGY+ +P Sbjct: 186 FVKGALTDWRDKTFIESIVTLAKGMHIRTVAEFIENEEIKEIMKEIGVDYGQGYYFGKPS 245 Query: 269 PEPPV 273 P+P V Sbjct: 246 PKPWV 250