BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0093.p (675 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycero... 335 2e-91 PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycero... 298 3e-80 AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycero... 279 2e-74 SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glyce... 275 3e-73 RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycer... 241 3e-63 BH1826 [QK] COG3284 Transcriptional activator of acetoin/glycero... 233 1e-60 BH1879 [KT] COG3829 Transcriptional regulator containing PAS, AA... 228 4e-59 VC1817 [QK] COG3284 Transcriptional activator of acetoin/glycero... 228 5e-59 BH2739 [KT] COG3829 Transcriptional regulator containing PAS, AA... 221 3e-57 CC3315 [T] COG2204 Response regulator containing CheY-like recei... 217 6e-56 >PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 643 Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 226/600 (37%), Positives = 315/600 (52%), Gaps = 45/600 (7%) Query: 79 METLYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTNAIGT 138 M +LY Q+ V+L+DA G IL+ + + L G WSE GTN IGT Sbjct: 79 MHSLYQQLSGNDHAVLLTDARGVILNCVNADAQRQTFEHAGLWLGADWSEPCEGTNGIGT 138 Query: 139 ALFEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHK----HTMA 194 + E++ T+ ++H+ + LTCSA+P+FD +G+++ VLDVS + HTMA Sbjct: 139 CVVERQALTIQQEEHFRSRHTGLTCSASPVFDPQGELMAVLDVSSARQEVSRQSQFHTMA 198 Query: 195 LVRMSAQMIENHLLAGSFPDCITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRSAQFQL 254 LV +SA++IE F L FH + ++VG EG+++F GR A N+SA L Sbjct: 199 LVNLSAKIIEGCYFLRRFEGSWLLRFHVQGDYVGLFSEGLLAFEEDGRIRAVNQSALNLL 258 Query: 255 GLTLAALQSHTFASLFGVPLSLLFEHHRKAAPGLLELCLHNGIRIHGRAELRLRDQHFQA 314 G L + F L L + L G ++ A LR Sbjct: 259 GCPRQRLLGQPVETFFDCRLDDLLGRASQQPSASWPLRTREGRTLY--AMLR-------- 308 Query: 315 AREAVIDAPGLLPPAPDTANPPPSPPQQRARHQRRPDLQALDTGDVRMSAIIAKLRRVID 374 AP +P A P L GD ++A + +V Sbjct: 309 ------GAPRAIPQALAVPTAAKPAPAA----------PGLCLGDAELAADFRRALKVYA 352 Query: 375 RDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIEAELFG 434 RD+P+L+ GETG+GKE A+A+H G R +A FVA+NC+AIPE LIE+ELFG Sbjct: 353 RDVPLLLNGETGSGKEAFAKAVH----LAGPRAEQA----FVALNCAAIPETLIESELFG 404 Query: 435 YEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLGSQRVI 494 Y G+FTGAR++G GK+ QA GGTLFLDEIGDMPLALQ RLLRVL+ER V PLG + Sbjct: 405 YRGGSFTGARKEGMRGKLQQADGGTLFLDEIGDMPLALQTRLLRVLEERRVVPLGGE-PE 463 Query: 495 PVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLIERILEDEGG 554 VD L+ AT++ L + A FREDLYYR+NG+ V LP LR+RSD +L++ +L +E Sbjct: 464 DVDVRLISATHRDLAGLVADGRFREDLYYRLNGMVVSLPPLRERSDREELLDYLLAEEAR 523 Query: 555 PHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDDFLEEAGAPG 614 + D + + LLA WPGN+RQ+ ++RT +A+ E + +G LP D + A Sbjct: 524 GQRIQLDGEVRQGLLAYRWPGNVRQMRTVLRTLVALCE-DGRVGLRDLPADIRQALAALP 582 Query: 615 VLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRNTIYRRLKSRG 674 S+ D E AA+ AL +VS A+ LG+SRNT+YR+L+ G Sbjct: 583 PAAAAPAPAAG-----NSLDDAERAALLAALDGQRWHVSRVAEQLGISRNTLYRKLRRHG 637 >PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 625 Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 220/601 (36%), Positives = 299/601 (49%), Gaps = 74/601 (12%) Query: 82 LYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTNAIGTALF 141 L+ ++R+ V+L+DA+G + +S + L G WSE GT + L Sbjct: 82 LHGRVRDADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLT 141 Query: 142 EQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHKHTMALVRM--- 198 ++ TVH + H+ A LTCSAAP+FD +G++LGVLDVS + + L+R Sbjct: 142 DRTAVTVHKRDHFRAAFIDLTCSAAPVFDPQGELLGVLDVSAVQSPDDRRSQHLIRQMVA 201 Query: 199 -SAQMIENHLLAGSFPDCITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRSAQFQLGLT 257 SA+ IEN S L H +V + + + ++ GR LA N +A+ L Sbjct: 202 QSAREIENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDADGRLLALNPAARHYLRQR 261 Query: 258 LAALQSHTFASLFGVPLSLLFEHHRKAAPGLLELCLHNGIRIHGRAELRLRDQHFQAARE 317 L + SH + +F+ A Sbjct: 262 LGQVPSH---------IGEVFD--------------------------------LDALHA 280 Query: 318 AVIDAPGLLPPAPDTANPPPSPPQQRARHQRR--PDLQALDTGDVRMSAIIAKLRRVIDR 375 A AP LL + S P+ +AR R PD ALD R++ + RV DR Sbjct: 281 AADQAPCLLRGQAGELHVRLSAPRAKARRLEREVPDDAALDP---RIAESLRLAVRVKDR 337 Query: 376 DIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIEAELFGY 435 ++P+LI GETG GKE A+ +H SAR PFVA+NC+AIPE+LIE+ELFGY Sbjct: 338 NLPVLIQGETGAGKEVFARQLHQASARRDK--------PFVALNCAAIPESLIESELFGY 389 Query: 436 EDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLGSQRVIP 495 GAFTGA KG G + QA GGTLFLDEIGDMPL LQ RLLRVL E V PLG+ R Sbjct: 390 VGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQA 449 Query: 496 VDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLIERILEDEGGP 555 VD ++CAT++ L + A FREDLY+R+ G + +LP LR+RSD LI RIL++E Sbjct: 450 VDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAH 509 Query: 556 HAPRFDAQAQAL--LLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDDFLEEAGAP 613 R + AL LL WPGN+RQL +++R + A+ G + LP + E P Sbjct: 510 CGVRIELGEAALECLLGYRWPGNVRQLRHVLRYACALC-GGATLQLADLPAELRGERRTP 568 Query: 614 GVLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRNTIYRRLKSR 673 S C S E A+ AL H AAA+ LG+SR T+YRR++ Sbjct: 569 A-------------SACESGGGPERDALLDALVRHRWKPMAAARELGISRATLYRRVRRH 615 Query: 674 G 674 G Sbjct: 616 G 616 >AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 627 Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 220/610 (36%), Positives = 297/610 (48%), Gaps = 65/610 (10%) Query: 75 ARPVMETLYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTN 134 AR +E LY Q+ + +++LSD +G + LGD F + L G WSE GT Sbjct: 68 ARSGLERLYRQVAEQNYVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWSEPRAGTC 127 Query: 135 AIGTALFEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHK--HT 192 A+G + + T+H H+ + L+C+AAPI+D +G + VLD+S K Sbjct: 128 AVGACIATGESLTIHQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQN 187 Query: 193 MA--LVRMSAQMIE-NHLLAGSFPDCITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRS 249 MA LV + + IE +L+A S D + L F EF+ E +S GR + Sbjct: 188 MARHLVSSTVRRIELANLMASSRHDLV-LRFAGAPEFLDVDPEAALSVDGSGRITGMTHA 246 Query: 250 AQFQLGLTLAALQSHTFASLFGVPLSLLFEHHRKAAPGLLELCLHNGIRIHGRAELRLRD 309 A L L L G + FE GL EL A L R Sbjct: 247 AARLL-AASRGLDWRMPERLLGQRVEEFFE------AGLDEL-----------ASL-TRS 287 Query: 310 QHFQAAREAVIDAPGLLPPAPDTANPPPSPPQQRARHQRRPDLQALDTGDVRMSAIIAKL 369 Q R V D L A + S P R++ Q + D VR L Sbjct: 288 SLPQDRRIVVRDGTVLYAHAIEPQQRRSSVPLARSKPQPVTERIGGDGPAVR------NL 341 Query: 370 RRVIDR----DIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPE 425 RR +++ +PIL+ G+TGTGKE LA+ IH S G FVAVNC+AIPE Sbjct: 342 RRKVEKLSPARLPILLQGQTGTGKEHLARIIHDASGVSGR---------FVAVNCAAIPE 392 Query: 426 NLIEAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAV 485 LIE+ELFGY GAFTGA KG G + +A GGTLFLDEIGDMP A Q RLLRVL E V Sbjct: 393 QLIESELFGYLPGAFTGALAKGRKGLVEEAQGGTLFLDEIGDMPFAAQSRLLRVLAEGEV 452 Query: 486 TPLGSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLI 545 P+G VDF ++ A+++PL +M AFREDLYYR+N + LPAL +R D P L+ Sbjct: 453 LPVGGSTPQKVDFRVISASHRPLNDMVRTGAFREDLYYRLNAAVLTLPALSERDDFPWLL 512 Query: 546 ERILEDEGGPHAPRFDAQAQALLLASH-WPGNLRQLANLVRTSLAMAEGEEAIGPHHLPD 604 +RILE G P P + A L + H WPGN+R+L N + + A+ + + I LP+ Sbjct: 513 DRILEKHGMPGRPLTLSNAARLTILHHRWPGNIRELDNAIAFAAALCD-DGLITVEDLPE 571 Query: 605 DFLEEAGAPGVLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRN 664 + P + G + AL + C GN+S AA+ LGV R Sbjct: 572 QLTPASSTPMIDSRGTD-LRALLAAC------------------NGNISEAARRLGVDRT 612 Query: 665 TIYRRLKSRG 674 T++RR++ G Sbjct: 613 TLHRRMRRLG 622 >SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Sme Sinorhizobium meliloti Length = 627 Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 214/606 (35%), Positives = 302/606 (49%), Gaps = 65/606 (10%) Query: 75 ARPVMETLYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTN 134 AR +E L+ Q+ + +++LSD EG + LGD F + L G WSE GT Sbjct: 69 ARSGLENLFRQVAGQNYVLLLSDREGVTVEFLGDPLFGNSLRKAGLYLGSEWSEWRAGTC 128 Query: 135 AIGTALFEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHKHT-- 192 A+G L + T+H H+ + + L+C+AAPI+D +G++ VLD+S K + Sbjct: 129 AVGACLETGEALTIHQTDHFDNTHTPLSCTAAPIYDIQGELSAVLDISLLSSPILKASQN 188 Query: 193 --MALVRMSAQMIENHLLAGSFPDCITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRSA 250 + LV + + IE L + L F EF+ E +S GR + Sbjct: 189 LALHLVSATVRRIELANLMAQARNQWVLRFSRSPEFLDVDPEAAISIDGLGRIAGMTHAG 248 Query: 251 QFQLGLTLAALQSHTFASLFGVPLSLLFEHHRKAAPGLLELCLHNGIRIHGRAELRLRDQ 310 L + L L G P+S F+ I + ++L R Sbjct: 249 AKILARS-TGLDWRDPQQLIGEPVSRFFD-----------------IEVDNLSDLTRR-- 288 Query: 311 HFQAAREAVI---DAPGLLPPAPDTANPPPSPPQQRARHQRRPDLQALDTGDVRMSAIIA 367 + RE ++ D L A + + +P +R Q P L+ L GD + A + Sbjct: 289 --RPTRERLVFARDGNALFAHAIEPHSKVRAP--LVSREQIPPALRRLG-GDAPVIAALQ 343 Query: 368 KLRRVIDRD-IPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPEN 426 + R +PILI GETGTGKE LA+AIH S G PFVA+NC+AIPE Sbjct: 344 AKAAKLARTRLPILIQGETGTGKEHLARAIHEGSGLEG---------PFVAINCAAIPEQ 394 Query: 427 LIEAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVT 486 LIE+ELFGY GAFTGA KG G I QA GGTLFLDEIGDMPLALQ RLLRVL E V Sbjct: 395 LIESELFGYLPGAFTGASAKGRKGLIEQADGGTLFLDEIGDMPLALQSRLLRVLAEGEVL 454 Query: 487 PLGSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLIE 546 P+G V +V A+++PL+ + ++ AFREDLYYR+N + LPALRDR D ++E Sbjct: 455 PVGGTAPRKVRIRIVSASHRPLQTLVSQGAFREDLYYRLNAATLTLPALRDRPDFDWVLE 514 Query: 547 RILEDEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAE-GEEAIGPHHLPDD 605 ++L+ G A + L A WPGN+R+L N++ + A+AE G +G LPD Sbjct: 515 QLLKRHGDGELI-LSPAALSALKAHDWPGNIRELDNVIGVAAALAENGVVELG--DLPDQ 571 Query: 606 FLEEAGAPGVLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRNT 665 L A D + A + L++ W N+S AA+ LG+ R+T Sbjct: 572 LLANA-------DTVGGNEASATLSLTLTACNW------------NISEAARRLGLDRST 612 Query: 666 IYRRLK 671 ++R++K Sbjct: 613 VHRQIK 618 >RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Rso Ralstonia solanacearum Length = 637 Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/304 (47%), Positives = 192/304 (63%), Gaps = 23/304 (7%) Query: 371 RVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIEA 430 RV + D+P+L+ GETGTGKE A+A+H S+R A PFVAVNC+AIPE LIE+ Sbjct: 351 RVFEHDVPLLLHGETGTGKEAFARAVHQASSR--------AAQPFVAVNCAAIPETLIES 402 Query: 431 ELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLGS 490 ELFGY G+FTGARR+G GK+ QA GGTLFLDEIGDMPLALQ RLLRVL+ERAV P+G Sbjct: 403 ELFGYRGGSFTGARREGMRGKLQQADGGTLFLDEIGDMPLALQSRLLRVLEERAVVPIGG 462 Query: 491 QRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLIERILE 550 + VD +V A+++ + FREDLYYR+NGL++ LP LR+R+D L+ +L Sbjct: 463 E-AQTVDVRIVSASHRDMEARVRDGRFREDLYYRLNGLRITLPPLRERADKAALLAHVLA 521 Query: 551 DEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDDFLEEA 610 +E R D A+ LLA WPGN+RQL N++RT +A+++ + I LP + Sbjct: 522 EESRGRPARLDDDARDALLAQPWPGNVRQLRNVLRTLVALSD-DGRIRLRDLPPEL---- 576 Query: 611 GAPGVLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRNTIYRRL 670 A + + + E AA+ AL+ ++ AAKALG+SRNT+YR+L Sbjct: 577 ---------RPPAMASAAAPAPLDNAEKAALLAALQAQQWRMTHAAKALGISRNTLYRKL 627 Query: 671 KSRG 674 + G Sbjct: 628 RKHG 631 >BH1826 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Bha Bacillus halodurans Length = 623 Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/306 (42%), Positives = 183/306 (59%), Gaps = 13/306 (4%) Query: 369 LRRVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLI 428 ++RV D + + GETGTGKE A+ IH +S+R APFVA+NC AIP++LI Sbjct: 325 IQRVAKTDATVYLFGETGTGKEVTARTIHENSSRH--------EAPFVAINCGAIPKDLI 376 Query: 429 EAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPL 488 +ELFGY +GAFTGARR+G GK QAHGGT+FLDEIG++P A+Q LLRVLQER +TP+ Sbjct: 377 GSELFGYVEGAFTGARRQGYKGKFEQAHGGTVFLDEIGEIPEAMQIALLRVLQERVITPI 436 Query: 489 GSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRS-DLPQLIER 547 G + I VD L+ ATN+ LR++ FREDLYYR+N + LP+LR+R D+P LI Sbjct: 437 GGTKEIEVDIRLITATNKDLRQLVREGNFREDLYYRLNVFPIALPSLRERKEDIPHLIRY 496 Query: 548 ILEDEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDDFL 607 + G A L++ HWPGN+R+L N++ +++G E F Sbjct: 497 FCQQNGW--ELNLSKTLMAKLMSYHWPGNIRELLNILERIFILSDGGEREVSEFDSLLFE 554 Query: 608 EEAGAPGVLHDGMHTMHALRSDCLSIQDNEWA-AIERALRTHAGNVSAAAKALGVSRNTI 666 G G ++ + + ++ L ++ + RALR GNV+ AAK L + R+T Sbjct: 555 HHKGTEGSENEAVE-LTGPSANSLPFRERILKEKMIRALRDTNGNVTLAAKELDMPRSTF 613 Query: 667 YRRLKS 672 Y+RLK Sbjct: 614 YKRLKK 619 Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 82/150 (54%) Query: 56 LSRADLAQTLEANLALSGHARPVMETLYDQIRNTHSMVILSDAEGTILHTLGDSDFLAKA 115 L+ + +E N L A+P ++ ++D I + M ++ D++G +L G ++KA Sbjct: 51 LNEKEFENQIEKNRRLLQLAQPHLQQIHDFIHSLGMMALIIDSDGYVLQITGHEHTVSKA 110 Query: 116 DRVALGPGGRWSEQLRGTNAIGTALFEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQV 175 DR+ G RW+E+ GTNAIGTAL ++P + +HY A+ C AAPI D G+V Sbjct: 111 DRINFIEGVRWTEEAVGTNAIGTALKIEEPVVISGYEHYAVASHTWNCFAAPIRDEEGKV 170 Query: 176 LGVLDVSGECGSFHKHTMALVRMSAQMIEN 205 +GV+DVS H + + +V A IE Sbjct: 171 VGVIDVSCPSDRSHPYVLGMVTTIAYAIEK 200 >BH1879 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Bha Bacillus halodurans Length = 555 Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 178/310 (57%), Gaps = 24/310 (7%) Query: 370 RRVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIE 429 RR+ +DI IL+ GE+GTGKE AQA+H +S R PFVA+NC+AIP+NL+E Sbjct: 259 RRIAGQDITILLRGESGTGKEMFAQAVHRESQR--------AQGPFVAINCAAIPDNLLE 310 Query: 430 AELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLG 489 +ELFGYE GAFTGA+R+G G+ AHGGT+FLDEIGDM L LQ +LLRVLQER V +G Sbjct: 311 SELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVG 370 Query: 490 SQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDRS-DLPQLIERI 548 + + VD ++ AT++ L EM + FREDLYYR+N + + +P +R+R DLP LIE Sbjct: 371 GTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYF 430 Query: 549 ---LEDEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDD 605 L ++ F A L+ WPGN+R++ N+V + + G + I LP Sbjct: 431 MKRLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEHVIYLETG-DLITADSLPAY 489 Query: 606 F-LEEAGAPGVLHDGM--HTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVS 662 ++E + L + H + + L + D H AK +G+S Sbjct: 490 LKIKEGKSTSQLQINVAPHGEESFKQQVLHLLD--------VYGRHTEGKKRIAKEMGIS 541 Query: 663 RNTIYRRLKS 672 T+YRRLK Sbjct: 542 LPTLYRRLKK 551 >VC1817 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Vch Vibrio cholerae Length = 587 Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/328 (40%), Positives = 181/328 (55%), Gaps = 32/328 (9%) Query: 355 LDTGDVRMSAIIAKLRRVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAP 414 L GD + + RVID+DI +LI G+TG GK +A+H +S R P Sbjct: 281 LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQR--------KNGP 332 Query: 415 FVAVNCSAIPENLIEAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQG 474 VAVNC A+ + L+EAELFGY GAFTGA KG GK+ A G LFLDEI D+PL Q Sbjct: 333 LVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQS 392 Query: 475 RLLRVLQERAVTPLGSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPA 534 RLL VLQ++ V P+GS VD ++ AT++ L ++ + FR+DLYYR++ L V+LP+ Sbjct: 393 RLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPS 452 Query: 535 LRDRSDLPQLIERILEDEGGPHAPRFDAQAQAL------LLASHWPGNLRQLANLVRTSL 588 + R D LI I H DA Q LLA HWPGNLR+L +L++ + Sbjct: 453 FQQRQDRQALIHHI-------HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVAS 505 Query: 589 AMAEGEEAIGPHHLPDDFLEEA--GAPGVLHDGMHTMHALRSDCLSIQDNEWAAIERALR 646 MAEGE + +HLP ++ AP D I+ A++ + + Sbjct: 506 LMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQK---------DIKSTVEASLLKTYQ 556 Query: 647 THAGNVSAAAKALGVSRNTIYRRLKSRG 674 GN+S ++ LG+SRNTIYR+LK+ G Sbjct: 557 ATQGNISQTSRLLGLSRNTIYRKLKALG 584 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 1/216 (0%) Query: 36 SHQRSSSYGIMRGQRPDLDSLSRADLAQTLEANLAL-SGHARPVMETLYDQIRNTHSMVI 94 S QRS G+ + R LS L + + L +R + Y ++ S +I Sbjct: 16 SWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDSRLI 75 Query: 95 LSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTNAIGTALFEQKPTTVHAQQHY 154 L+D G I+ + G + F K ++AL G W E ++GTNAIGTAL EQKP +V +QH+ Sbjct: 76 LTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGEQHF 135 Query: 155 LDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHKHTMALVRMSAQMIENHLLAGSFPD 214 + + F++CSA+PIFD+ GQ++GVLD++ E T +V+ Q++EN LL Sbjct: 136 IQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQIPHG 195 Query: 215 CITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRSA 250 + + + + +G++ G+ LA N+ A Sbjct: 196 HVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVA 231 >BH2739 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Bha Bacillus halodurans Length = 526 Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 180/308 (58%), Gaps = 20/308 (6%) Query: 370 RRVIDRDIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIE 429 ++V D +LITGE+G GKE A+ IH S R PF+A+NC AIP L E Sbjct: 228 KKVATTDASVLITGESGVGKELFAEGIHLASQR--------ADKPFIAINCGAIPAALFE 279 Query: 430 AELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLG 489 +ELFGYE GAFTGA + G GK+ A GGTLFLDEIG++PL LQ +LLRVLQE+ +G Sbjct: 280 SELFGYEPGAFTGAVKGGKKGKVDAAKGGTLFLDEIGELPLELQVKLLRVLQEKMFYRVG 339 Query: 490 SQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRDR-SDLPQLIERI 548 IP+D +V ATN+ L EM + FREDL+YRIN + + +P LR+R D+P+LI+ Sbjct: 340 GTEAIPIDLRIVAATNRHLEEMVEKGEFREDLFYRINVISIPIPPLRERPEDIPELIQLF 399 Query: 549 LEDEGGPHA---PRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGEE--AIGPHHLP 603 L++ +A P D + LL WPGN+RQL NL+ L + G+E I HHLP Sbjct: 400 LKEFSLKYAKAIPTIDPEVIYTLLKYKWPGNIRQLRNLIE-RLVILSGDEHDVIKLHHLP 458 Query: 604 DDFLEEAGAPGVLHDGMHTMHALRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSR 663 + + G L+ A +E A I+ AL GN SAAAK LG+SR Sbjct: 459 EALQGKNGKVETLNVENEIPAAQPEKA-----DEVAQIKAALTRTYGNKSAAAKLLGISR 513 Query: 664 NTIYRRLK 671 T+Y ++K Sbjct: 514 ATLYNKMK 521 >CC3315 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Ccr Caulobacter vibrioides Length = 488 Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 38/341 (11%) Query: 363 SAIIAKLRRVIDR----DIPILITGETGTGKEWLAQAIHGDSARFGARQNRAGAAPFVAV 418 S ++ ++R+ +R IP+LITGE+G GKE +A+A+HG S R G PFVAV Sbjct: 148 SPVMTMVKRMGERAAKSGIPVLITGESGVGKELIARAVHGSSDRAGK--------PFVAV 199 Query: 419 NCSAIPENLIEAELFGYEDGAFTGARRKGALGKIAQAHGGTLFLDEIGDMPLALQGRLLR 478 NC AIPENL+E+ LFG+E G+FTGA K LGK +A GGTLFLDE+G++PL +Q +LLR Sbjct: 200 NCGAIPENLVESILFGHEKGSFTGATDK-HLGKFKEADGGTLFLDEVGELPLDMQVKLLR 258 Query: 479 VLQERAVTPLGSQRVIPVDFALVCATNQPLREMAARHAFREDLYYRINGLQVKLPALRD- 537 LQE + P+GS+R I VD +V ATN+ L++ + FREDL+YR+N ++ P+LR+ Sbjct: 259 ALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFREDLFYRLNVFPIEAPSLRER 318 Query: 538 RSDLPQLIE---RILEDEGGPHAPRFDAQAQALLLASHWPGNLRQLANLVRTSLAMAEGE 594 R D+P L+E R E G + LL + WPGN+RQL N V ++ +A+ Sbjct: 319 REDIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWPGNVRQLENTVYRAIVLADAP 378 Query: 595 E-------------------AIGPHHLPDDFLEEAGAPGVLHDGMHTMHAL--RSDCLSI 633 +I P P L+ A + L R ++ Sbjct: 379 YLQPFDFPAISGLAAPIEAVSISPSPPPAALLQATHAAMAAAVAEAPVRILDDRGHLRTL 438 Query: 634 QDNEWAAIERALRTHAGNVSAAAKALGVSRNTIYRRLKSRG 674 ++ E I+ A+ +AG++S A+ LG+ R+T+YR+++ +G Sbjct: 439 EEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQG 479