BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0052.p (494 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2725 [L] COG0415 Deoxyribodipyrimidine photolyase Nos Nostoc ... 340 6e-93 SPy1505 [L] COG0415 Deoxyribodipyrimidine photolyase Spy Strepto... 338 2e-92 slr0854 [L] COG0415 Deoxyribodipyrimidine photolyase Syn Synecho... 333 6e-91 VCA0057 [L] COG0415 Deoxyribodipyrimidine photolyase Vch Vibrio ... 323 4e-88 lin0597 [L] COG0415 Deoxyribodipyrimidine photolyase Lin Listeri... 322 1e-87 PA4660 [L] COG0415 Deoxyribodipyrimidine photolyase Pae Pseudomo... 315 2e-85 ECs0733 [L] COG0415 Deoxyribodipyrimidine photolyase Ecs Escheri... 310 5e-84 ZphrB [L] COG0415 Deoxyribodipyrimidine photolyase EcZ Escherich... 310 6e-84 phrB [L] COG0415 Deoxyribodipyrimidine photolyase Eco Escherichi... 309 8e-84 AGc2249 [L] COG0415 Deoxyribodipyrimidine photolyase Atu Agrobac... 303 8e-82 >alr2725 [L] COG0415 Deoxyribodipyrimidine photolyase Nos Nostoc sp. PCC 7120 Length = 479 Score = 340 bits (871), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 200/489 (40%), Positives = 281/489 (57%), Gaps = 26/489 (5%) Query: 5 DRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLAS 64 D L W RRDLR+ D+ L A QS +V VF D +IL R+ +++ S Sbjct: 3 DLVLFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILERDDVAPA----RVTYMIGS 58 Query: 65 VAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQTLA 124 + EL + AG L++LHG V IP LA L+ +AV+ N D EP + RD A+ L Sbjct: 59 LQELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILK 118 Query: 125 KSGAQLLSYK-DQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEKY 183 G Q L++K DQ++ DE+ + S P++V+TP+ W SK A E + + Sbjct: 119 DKGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGLTES 178 Query: 184 LTALASPPGKAG-HALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGSYGAAR 241 LA KAG LP+ K LGF +L I G + AQ+ L+EF + I Y R Sbjct: 179 EQELAQ---KAGVKTLPTAKDLGFFWD--ADLIIAPGEAAAQAKLEEFTAKAITEYQEQR 233 Query: 242 DFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMH---AGQGAAGAAVWLSELTWRDFYFM 298 +FPAV G S LS L+FG I IRT+ +A ++A+ + + +A W EL WR+FY Sbjct: 234 NFPAVDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQH 293 Query: 299 ILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHN 358 +++ P + A++ + WE E F AW EG+TGYP+VDAAM Q+N+SG+MHN Sbjct: 294 AMYNFPELADGAYRETFKNFPWETN---EEHFQAWREGKTGYPIVDAAMRQMNESGWMHN 350 Query: 359 RLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNP 418 R RM+VASFLTKDL I+ + GE+YF + L D DL+ANNGGWQW++SSG D +P RIFNP Sbjct: 351 RCRMIVASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNP 409 Query: 419 VTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQ 478 +QS+KFDPD ++IRR++P+L + + + TP ER G Y +PIVDH + Sbjct: 410 ASQSQKFDPDAEYIRRWVPELRSMDTEYL-VTGKITPLERHAVG------YVKPIVDHQK 462 Query: 479 ARERTLARY 487 ++ RY Sbjct: 463 QQQLFKQRY 471 >SPy1505 [L] COG0415 Deoxyribodipyrimidine photolyase Spy Streptococcus pyogenes M1 GAS Length = 469 Score = 338 bits (866), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 189/488 (38%), Positives = 263/488 (53%), Gaps = 28/488 (5%) Query: 7 SLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 S++WFRRDLR+ D AL +A++ CVF F+ + L L + R + SV Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHS------RNQSSFITSVL 56 Query: 67 ELDEALRHAGGGLIVLHGSAVTQIPALAAEL-DVQAVYANTDYEPAAVERDAAVAQTLAK 125 + L+ G L +++G +T L +L D VY N D RD AQ K Sbjct: 57 AFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKK 116 Query: 126 SGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEKYLT 185 +G + +Y+D + E++ QS +P+ VFTPY W + YP E + Sbjct: 117 NGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQN-------------YPKETPIK 163 Query: 186 ALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGAARDFP 244 S P ++ + A L+ F+ D++ +Y A RDFP Sbjct: 164 VELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFP 223 Query: 245 AVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMILHHHP 304 A G S LS LR G I IRT+ A QA + G A +L EL WRDFY M+ +P Sbjct: 224 AQLGTSRLSPFLRIGAIGIRTVYHAVRQA----PNSLGQATFLKELAWRDFYNMVYVAYP 279 Query: 305 RVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRLRMVV 364 + + I+W P F W EG+TGYP+VDAAM Q+ ++G+MHNRLRM+V Sbjct: 280 DQKTQPIQKAFSQIEWVNNPD---WFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIV 336 Query: 365 ASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVTQSEK 424 ASFLTKDL DWR GE+YF + L D+D A+N GGWQWA+S+G DA PYFRIFNPVTQ ++ Sbjct: 337 ASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKR 396 Query: 425 FDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQARERTL 484 FDP G+FI+ YLPQL + K +H PW + + ++G +YP+PIVDHA+ RE+ + Sbjct: 397 FDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAI 456 Query: 485 ARYAVVKK 492 A+Y K+ Sbjct: 457 AKYEWAKE 464 >slr0854 [L] COG0415 Deoxyribodipyrimidine photolyase Syn Synechocystis Length = 488 Score = 333 bits (854), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 198/494 (40%), Positives = 273/494 (55%), Gaps = 35/494 (7%) Query: 8 LVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVAE 67 L+W RRDLR+ DH AL A ++ ++ VF D IL +AE + R+ +LL + Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKIL---QAEDMA-PARVAYLLGCLQS 75 Query: 68 LDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQTLAKSG 127 L + + G L+V V +P LA L V D EP A +RD AVAQ L + G Sbjct: 76 LQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135 Query: 128 AQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEKYLTAL 187 + + DQ++ EVLTQ+ P++V+TP+ W S+L P P K L L Sbjct: 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNW-SQLPKT------SPVPTPKDLQGL 188 Query: 188 ASPPGKAGHA------LPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGSYGAA 240 +P K A +P LGF Q L + G A+ LD F+ + Y Sbjct: 189 -TPAEKEKLAPLEPLAIPQLADLGFIWD--QPLPLTPGEEAAEQRLDWFVAHGLEEYQQN 245 Query: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMH---AGQGAAGAAVWLSELTWRDFYF 297 R+FPA+ G S LS L+FG IS RTL + ++A + + A W EL WR+FY Sbjct: 246 RNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQ 305 Query: 298 MILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMH 357 L+ P + + ++ + WE+ + F AWCEGRTGYP++DAAMAQ+NQ+G+MH Sbjct: 306 HCLYSFPALAQGPYRSPFQEFPWEEN---QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMH 362 Query: 358 NRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFN 417 NR RM+VASFL KDL ++W+WGE YF + L D DLAANNGGWQW++SSG D +P RIFN Sbjct: 363 NRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFN 421 Query: 418 PVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHA 477 P TQ++KFDP+G++IR +LPQLA+ + ++ G NYP PIVDH Sbjct: 422 PHTQAQKFDPEGEYIRTWLPQLARFDTGDLLT-------GKLTPGSRRSVNYPEPIVDHN 474 Query: 478 QARERTLARYAVVK 491 Q + RY +VK Sbjct: 475 QQQREFKRRYQLVK 488 >VCA0057 [L] COG0415 Deoxyribodipyrimidine photolyase Vch Vibrio cholerae Length = 469 Score = 323 bits (829), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 197/491 (40%), Positives = 265/491 (53%), Gaps = 32/491 (6%) Query: 8 LVWFRRDLRMTDHAALYYALSQSRQVWCVFV-----FDTDILAALKAEGVTQDRRIDFLL 62 LVWFRRDLR D+ AL AL+ V +++ + LA ++A+ + RR+ L Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIW--RRLAELQ 60 Query: 63 ASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQT 122 +A L+ L + AV+Q LA L+ V AN DYE +RD Q Sbjct: 61 QELAALNVPLFYQQVADFQAAAVAVSQ---LAKTLNATQVLANRDYELDEQQRDQLAQQL 117 Query: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEK 182 L++ G ++ D+ + V T+ + F VFTP+K AW++ F P + Sbjct: 118 LSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLT--------LFQPPVIGKN 169 Query: 183 YLTALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGAAR 241 AL + P L H + F + ++ L +F +R+ Y AR Sbjct: 170 RPVALWNVPSALAE-LVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQAR 228 Query: 242 DFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMILH 301 DFPA +G S LS +L G +S R G+ + GA VWLSEL WR+FY ++ Sbjct: 229 DFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVA 288 Query: 302 HHPRVTRHAFKPEYDA-IQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360 P +++ E+ A ++W + F WCEG+TGYP+VDAAM Q+NQ+G+MHNRL Sbjct: 289 IEPNLSKSRDFVEWGARLEWWNDNEK---FQLWCEGKTGYPIVDAAMRQLNQTGWMHNRL 345 Query: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420 RM+VASFLTKDL IDWRWGERYF L D D AANNGGWQW +S+GCD QPYFRIFNPV+ Sbjct: 346 RMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVS 405 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR 480 Q EKFDP+G FIRR++P+L +S+ IH PWT V YP +VDH Q R Sbjct: 406 QGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP--------AVNSVLYPARLVDHKQER 457 Query: 481 ERTLARYAVVK 491 E TL Y K Sbjct: 458 EVTLRLYKTAK 468 >lin0597 [L] COG0415 Deoxyribodipyrimidine photolyase Lin Listeria innocua Length = 467 Score = 322 bits (826), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 183/489 (37%), Positives = 266/489 (54%), Gaps = 33/489 (6%) Query: 7 SLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 S++WFRRDLR+ D+ ALY+A + + +F + +K Q ASVA Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEED---LILLFQVNPEQFIKGSPSHQA-----FFASVA 54 Query: 67 ELDEALRHAGGGLIVLHGSAVTQIPALAAELDV-QAVYANTDYEPAAVERDAAVAQTLAK 125 + L + L ++ G + + L ++ V+ N D RD A A Sbjct: 55 HFQQEL-NKNTHLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFFAD 113 Query: 126 SGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEKYLT 185 + SY D + +EV +T+ + +FTPY W ++ + LKP + K Sbjct: 114 KEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRK--- 170 Query: 186 ALASPPGKAGHALPSHKQLGFAPSNLQEL-KIPTGMSGAQSLLDEFL-DRIGSYGAARDF 243 P++++ +Q+L +G A + L F+ + + Y ARD Sbjct: 171 ---------ESLFPNYEEQ--FRELIQDLPAFDSGEKAANTRLANFVKEDLADYDKARDV 219 Query: 244 PAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMILHHH 303 PA+ S+LS +LR G ISIRT+ QA+ + G A + EL WRDFY MI Sbjct: 220 PALDKTSHLSRYLRTGEISIRTV----WQALQKEEATEGRATFEKELCWRDFYNMIYVSF 275 Query: 304 PRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRLRMV 363 P+ + Y I+WE + F W +G+TG+PLVDAAM Q+ ++G+MHNRLRM+ Sbjct: 276 PKQKNEPIQENYRFIEWENNRE---FFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMI 332 Query: 364 VASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVTQSE 423 ASFLTKDL IDWR+GE+YF + L D+D A+N GGWQWA+S+G DA PYFRIFNP TQSE Sbjct: 333 TASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSE 392 Query: 424 KFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQARERT 483 KFDPDG FIR+Y+ +L L +K IH P + E+ + G++LG++YP PI+DH + R+ Sbjct: 393 KFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLA 452 Query: 484 LARYAVVKK 492 +ARY K+ Sbjct: 453 IARYEFSKE 461 >PA4660 [L] COG0415 Deoxyribodipyrimidine photolyase Pae Pseudomonas aeruginosa Length = 481 Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 204/489 (41%), Positives = 272/489 (55%), Gaps = 32/489 (6%) Query: 7 SLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 +L+WFR DLR TD++AL A + R +++ A E ++DF L ++ Sbjct: 7 NLIWFRCDLRTTDNSALLAA-ADGRPCLALYLLSP----AQWREHDDAPCKVDFWLRNLG 61 Query: 67 ELDEALRHAGGGLIVLHGSAVTQIPA----LAAELDVQAVYANTDYEPAAVERDAAVAQT 122 EL L L+V Q P L EL V AV+ N +Y RD AV Q Sbjct: 62 ELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQR 121 Query: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEK 182 L + G S+ DQ+ F VLT++ F VF+ ++ +L A +P P Sbjct: 122 LREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPP 181 Query: 183 YLTALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGSYGAAR 241 + ALAS P LP P++ P G AQ L +F D+ + Y R Sbjct: 182 H--ALASDP------LPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERR 233 Query: 242 DFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHA--GQGAAGAAVWLSELTWRDFYFMI 299 DFPA+ G S LS +L G +S R AA+ A G GAA W++EL WR+FY I Sbjct: 234 DFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHI 293 Query: 300 LHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHN 358 L +PRV+RH F+ E +A++W Q P A AW +GRTG P++DAAM Q+ +G+MHN Sbjct: 294 LVGYPRVSRHRPFREETEALRWRQAP---AELEAWQQGRTGIPIIDAAMRQLLATGWMHN 350 Query: 359 RLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNP 418 RLRMVVA FL+K+L IDWR GER+F RHL D DLAANNGGWQW++S+G DA PYFR+FNP Sbjct: 351 RLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNP 410 Query: 419 VTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQ 478 ++QSE+FDP G+FIR +LP+LA L K IH P G+ G +YPRP+VD Sbjct: 411 LSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVDLKA 462 Query: 479 ARERTLARY 487 +RER LA + Sbjct: 463 SRERALAAF 471 >ECs0733 [L] COG0415 Deoxyribodipyrimidine photolyase Ecs Escherichia coli O157:H7 Length = 472 Score = 310 bits (794), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 197/495 (39%), Positives = 270/495 (54%), Gaps = 35/495 (7%) Query: 8 LVWFRRDLRMTDHAALYYAL-SQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 LVWFR+DLR+ D+ AL A + S ++ +++ AA R+ + + A + Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHN----MSPRQAELINAQLN 60 Query: 67 ELDEALRHAGGGLIVLH----GSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQT 122 L AL G L+ ++V + + AE V ++ N YE RD V +T Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEK 182 L + + D VI V+T + + + VFTP+KNAW+ +L E P K Sbjct: 121 LRNVVCE--GFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAP----K 174 Query: 183 YLTALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGSYGAAR 241 ++ + P PS L + + P A + L +F G Y R Sbjct: 175 VRSSGSIKPA------PS-ITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQR 227 Query: 242 DFPAVKGPSYLSVHLRFGTISIR-TLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 DFPAV+G S LS L G +S R L R + A G AG+ VWL+EL WR+FY ++ Sbjct: 228 DFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGS-VWLNELIWREFYRHLM 286 Query: 301 HHHPRVTRHA-FKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNR 359 ++P + +H F D +QW+ P A AW EG+TGYP+VDAAM Q+N +G+MHNR Sbjct: 287 TYYPSLCKHCPFIAWTDRVQWQSNP---AHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNR 343 Query: 360 LRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPV 419 LRM+ ASFL KDL IDWR GERYF L D DLAANNGGWQWA+S+G DA PYFRIFNP Sbjct: 344 LRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPT 403 Query: 420 TQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQA 479 TQ EKFD +G+FIR++LP+L + K +H PW AGV L +YP+PIV+H +A Sbjct: 404 TQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWAE----KAGVKL--DYPQPIVEHKEA 457 Query: 480 RERTLARYAVVKKAE 494 R +TLA Y +K + Sbjct: 458 RVQTLAAYEAARKGK 472 >ZphrB [L] COG0415 Deoxyribodipyrimidine photolyase EcZ Escherichia coli O157:H7 EDL933 Length = 472 Score = 310 bits (794), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 197/495 (39%), Positives = 270/495 (54%), Gaps = 35/495 (7%) Query: 8 LVWFRRDLRMTDHAALYYAL-SQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66 LVWFR+DLR+ D+ AL A + S ++ +++ AA R+ + + A + Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHN----MSPRQAELINAQLN 60 Query: 67 ELDEALRHAGGGLIVLH----GSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQT 122 L AL G L+ ++V + + AE V ++ N YE RD V +T Sbjct: 61 GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120 Query: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEK 182 L + + D VI V+T + + + VFTP+KNAW+ +L E P K Sbjct: 121 LRNVVCE--GFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAP----K 174 Query: 183 YLTALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGSYGAAR 241 ++ + P PS L + + P A + L +F G Y R Sbjct: 175 VRSSGSIKPA------PS-ITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQR 227 Query: 242 DFPAVKGPSYLSVHLRFGTISIR-TLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 DFPAV+G S LS L G +S R L R + A G AG+ VWL+EL WR+FY ++ Sbjct: 228 DFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGS-VWLNELIWREFYRHLM 286 Query: 301 HHHPRVTRHA-FKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNR 359 ++P + +H F D +QW+ P A AW EG+TGYP+VDAAM Q+N +G+MHNR Sbjct: 287 TYYPSLCKHCPFIAWTDRVQWQXNP---AHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNR 343 Query: 360 LRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPV 419 LRM+ ASFL KDL IDWR GERYF L D DLAANNGGWQWA+S+G DA PYFRIFNP Sbjct: 344 LRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPT 403 Query: 420 TQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQA 479 TQ EKFD +G+FIR++LP+L + K +H PW AGV L +YP+PIV+H +A Sbjct: 404 TQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWAE----KAGVKL--DYPQPIVEHKEA 457 Query: 480 RERTLARYAVVKKAE 494 R +TLA Y +K + Sbjct: 458 RVQTLAAYEAARKGK 472 >phrB [L] COG0415 Deoxyribodipyrimidine photolyase Eco Escherichia coli K12 Length = 472 Score = 309 bits (792), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 198/500 (39%), Positives = 272/500 (54%), Gaps = 45/500 (9%) Query: 8 LVWFRRDLRMTDHAALYYAL-SQSRQVWCVFVFDTDILAALKAEGVTQD---RRIDFLLA 63 LVWFR+DLR+ D+ AL A + S +V +++ A + T + R+ + + A Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYI-------ATPRQWATHNMSPRQAELINA 57 Query: 64 SVAELDEALRHAGGGLIVLHG----SAVTQIPALAAELDVQAVYANTDYEPAAVERDAAV 119 + L AL G L+ ++V + + AE V ++ N YE RD V Sbjct: 58 QLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEV 117 Query: 120 AQTLAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYP 179 + L + + D VI V+T + + + VFTP+KNAW+ +L E Sbjct: 118 ERALRNVVCE--GFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPE------- 168 Query: 180 VEKYLTALASPPGKA-GHALPSHK-QLGFAPSNLQELKIPTGMSGAQSLLDEFLDR-IGS 236 +A+P ++ G PS L + + P A + L +F G Sbjct: 169 ------CVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGE 222 Query: 237 YGAARDFPAVKGPSYLSVHLRFGTISIR-TLARAAMQAMHAGQGAAGAAVWLSELTWRDF 295 Y RDFPAV+G S LS L G +S R L R + A G AG+ VWL+EL WR+F Sbjct: 223 YEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGS-VWLNELIWREF 281 Query: 296 YFMILHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSG 354 Y ++ +HP + +H F D +QW+ P A AW EG+TGYP+VDAAM Q+N +G Sbjct: 282 YRHLITYHPSLCKHRPFIAWTDRVQWQSNP---AHLQAWQEGKTGYPIVDAAMRQLNSTG 338 Query: 355 YMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFR 414 +MHNRLRM+ ASFL KDL IDWR GERYF L D DLAANNGGWQWA+S+G DA PYFR Sbjct: 339 WMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFR 398 Query: 415 IFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIV 474 IFNP TQ EKFD +G+FIR++LP+L + K +H PW AGV L +YP+PIV Sbjct: 399 IFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIV 452 Query: 475 DHAQARERTLARYAVVKKAE 494 +H +AR +TLA Y +K + Sbjct: 453 EHKEARVQTLAAYEAARKGK 472 >AGc2249 [L] COG0415 Deoxyribodipyrimidine photolyase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 479 Score = 303 bits (775), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 189/489 (38%), Positives = 259/489 (52%), Gaps = 24/489 (4%) Query: 8 LVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVAE 67 +VWFR+DLR++D+ AL A+ V V++ + K+ G + +L S+A Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIRE-------KSAGPLGGAQEWWLHHSLAA 61 Query: 68 LDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQTLAKSG 127 L +L AGG L++ G A + L +E V N Y+P + D A+ Q L G Sbjct: 62 LSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDDG 121 Query: 128 AQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPVEKYLTAL 187 + S+ Q++ E + T+S P+ V+TP+ A L +D P K LTA Sbjct: 122 LTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRA----LEGSDEPH--APADPPKSLTAP 175 Query: 188 ASPPGKAGHALPSHKQLGFAP---SNLQELKIPTGMSGAQSLLDEFLD-RIGSYGAARDF 243 P L + K L P + ++ P G +GA LD+F+D + Y RDF Sbjct: 176 KVWP--KSEKLSNWKLLPTKPDWAKDFSDIWTP-GETGALDKLDDFIDGALKGYEEGRDF 232 Query: 244 PAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMILHHH 303 PA S LS HL G IS + A + + + + + E+ WR+F + +L H Sbjct: 233 PAKPATSLLSPHLAAGEISPAAVWHAT-KGLSRHIASNDISRFRKEIVWREFCYHLLFHF 291 Query: 304 PRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRLRMV 363 P + + +DA W E F AW G TGYP+VDA M Q+ Q G MHNR+RM+ Sbjct: 292 PELGEKNWNDSFDAFSWRDD---EKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMI 348 Query: 364 VASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVTQSE 423 VASFL K L IDWR GE++F L D D A+N WQW + SG DA P+FRIFNP+ Q E Sbjct: 349 VASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGE 408 Query: 424 KFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQARERT 483 KFD DG ++RR++P+L KL K IH P+ A D AGV LG+ YP PIVDH +ARER Sbjct: 409 KFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERA 468 Query: 484 LARYAVVKK 492 LA YA VKK Sbjct: 469 LAAYAAVKK 477