BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0042.p (153 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia sol... 172 2e-43 PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae... 144 1e-34 BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subt... 143 1e-34 BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella me... 140 7e-34 CC0915 Non COG 132 2e-31 SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu... 130 8e-31 AGpA85 [K] COG1846 Transcriptional regulators Atu Agrobacterium ... 130 1e-30 SMa2020 [K] COG1846 Transcriptional regulators Sme Sinorhizobium... 129 2e-30 SMc00098 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu... 129 3e-30 AGl46 [K] COG1846 Transcriptional regulators Atu Agrobacterium t... 128 6e-30 >RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum Length = 153 Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/150 (58%), Positives = 113/150 (75%), Gaps = 5/150 (3%) Query: 6 DKRK-AAPL----LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLT 60 D RK A+P LD QLCFALYST + ++K+YR LL+ LG+TY QYLV++VLWE+D LT Sbjct: 2 DTRKTASPYPNLALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALT 61 Query: 61 VSEIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPR 120 VSEIGERL LDS TLTP+LKR+EA GL+ R+R+ +DERQV++SLTAEG L+ +A ++P Sbjct: 62 VSEIGERLFLDSPTLTPMLKRLEAAGLIGRQRSDADERQVIVSLTAEGQRLKHRAKDVPG 121 Query: 121 EVLRATESTAAELAAIKEELMQLRARLHKN 150 V A E AEL A++ +L +R RL KN Sbjct: 122 CVAAAMECVPAELEALRTQLTGMRTRLFKN 151 >PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 151 Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/135 (51%), Positives = 98/135 (72%) Query: 14 LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSA 73 LD QLCFALYSTSL M+K+Y+ LL+ LG+TY QY+ ++VLWE+D LTV EI R++ D Sbjct: 14 LDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARMLTDPG 73 Query: 74 TLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAEL 133 +LTPLLKR+E +GL+TR R++ DER V++ LT +G L+ +A +P +L +T +L Sbjct: 74 SLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIPACILESTGLDLPQL 133 Query: 134 AAIKEELMQLRARLH 148 A+K+EL+ LR L Sbjct: 134 VALKDELLALRGNLQ 148 >BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subtilis Length = 147 Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 102/151 (67%), Gaps = 4/151 (2%) Query: 1 MVSKTDKRKAAPLLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLT 60 M +K D K L+ QLCF LY++S M+K Y+ LL L ITY QYL L++LWE + LT Sbjct: 1 MENKFDHMK----LENQLCFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLT 56 Query: 61 VSEIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPR 120 V ++GE+L LDS TLTP+LKRME QGL+TR+R+ DER V+ISLT +G L+EKAV++P Sbjct: 57 VKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPG 116 Query: 121 EVLRATESTAAELAAIKEELMQLRARLHKNT 151 +L ++ + +L +K L L LH+ Sbjct: 117 TILGLSKQSGEDLKQLKSALYTLLETLHQKN 147 >BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella melitensis Length = 157 Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 69/130 (53%), Positives = 94/130 (72%) Query: 18 LCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSATLTP 77 LCFA+YST+ ++S+ Y+ +L L +TY Q+LV++VLWE+D TVSEIG RL LDS TLTP Sbjct: 22 LCFAVYSTANALSRAYQPILAPLDLTYPQFLVMLVLWERDDCTVSEIGARLNLDSGTLTP 81 Query: 78 LLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAELAAIK 137 LLKR+EA G +TR R DERQV I+LT EG LRE+A +P +++ AT +EL ++ Sbjct: 82 LLKRLEAAGRITRRRDPRDERQVRITLTDEGRKLREQAESVPEQIMCATGQPVSELQDLR 141 Query: 138 EELMQLRARL 147 LM++R L Sbjct: 142 NRLMKIRNHL 151 >CC0915 Non COG Length = 148 Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/127 (51%), Positives = 89/127 (70%) Query: 14 LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSA 73 LD QLCFALY + M++LYR LL LG+TY QYL ++VLWE TV +GE L LDS+ Sbjct: 17 LDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEASPRTVGALGEALDLDSS 76 Query: 74 TLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAEL 133 TLTPLLKR+EA GLVTR+R DER+V+++LT +G LR++AV +P +V A + + Sbjct: 77 TLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVTIPEKVFCALDMPLEAM 136 Query: 134 AAIKEEL 140 +++ L Sbjct: 137 GVLRDRL 143 >SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 138 Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 66/134 (49%), Positives = 92/134 (68%) Query: 14 LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSA 73 LD LCFA+YS + + +++Y+ LL +L +TY QYLV++ LWE+D TV +GE+L L+S+ Sbjct: 3 LDNFLCFAIYSANHAFTRVYKPLLDELDLTYPQYLVMVALWEKDDQTVGSLGEKLFLESS 62 Query: 74 TLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAEL 133 TLTP+LKR+EA G + R R +DERQV + LT G LREKA +P + AT AE+ Sbjct: 63 TLTPMLKRLEAMGYILRTRDKADERQVRVRLTETGRALREKASRVPIGIADATGMEPAEV 122 Query: 134 AAIKEELMQLRARL 147 A +K E+ LRA L Sbjct: 123 ARLKREIAALRASL 136 >AGpA85 [K] COG1846 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 185 Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 90/134 (67%) Query: 14 LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSA 73 + LCF+LYS + ++LYR LL +G+TY QYLV++ LW +D TV E+G+ L LDS+ Sbjct: 50 VSGMLCFSLYSAGHAFTQLYRPLLHKVGLTYPQYLVMVTLWHRDGQTVRELGKTLFLDSS 109 Query: 74 TLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAEL 133 TLTPLLKR+EA GL+TR R SDER+V+I LT +G LR A ++ R + A A L Sbjct: 110 TLTPLLKRLEAAGLITRTRNRSDEREVLIHLTEKGGALRAHAADIMRCIEEAVGVDAEAL 169 Query: 134 AAIKEELMQLRARL 147 AIK+ L +R ++ Sbjct: 170 RAIKQSLDTIRDKI 183 >SMa2020 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 155 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/148 (44%), Positives = 95/148 (64%) Query: 5 TDKRKAAPLLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEI 64 T P L QLC+A+Y+ +++ + Y+ LL +LG+TY+QYLVL VLW +D+ TV I Sbjct: 2 TKPHNDPPPLHDQLCYAIYTAGIAIQRAYKPLLDELGLTYAQYLVLNVLWSEDEQTVGAI 61 Query: 65 GERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLR 124 L L+S+TLTPLLKR+E GL+ R R S+ERQVVI+LT +G L+ +A L +L Sbjct: 62 ANTLALESSTLTPLLKRLETSGLLRRTRNLSNERQVVIALTEKGRALQHRAGCLSDTLLA 121 Query: 125 ATESTAAELAAIKEELMQLRARLHKNTG 152 A+ T ELAA+ ++ LR ++ G Sbjct: 122 ASTQTPPELAALNRDVRYLRNAIYSQIG 149 >SMc00098 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 158 Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/134 (47%), Positives = 92/134 (68%) Query: 14 LDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDSA 73 L QLCFA+YS + + ++ Y+ LL G+TY QYLVL+ LW+QD++TV IGE L LDS Sbjct: 18 LGRQLCFAVYSAAHAFNRAYKPLLDRFGLTYPQYLVLLTLWQQDRMTVKRIGEELGLDSG 77 Query: 74 TLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAEL 133 TL+PLLKR+EA G V R R A+DERQV++SLT G L+ +A + R++ A+ + E+ Sbjct: 78 TLSPLLKRLEAAGYVRRVRDAADERQVIVSLTDGGRELKAEAFGILRDIGSASGCSLEEV 137 Query: 134 AAIKEELMQLRARL 147 +++ L +L RL Sbjct: 138 GELRDALHRLTQRL 151 >AGl46 [K] COG1846 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 150 Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 4/147 (2%) Query: 5 TDKRKAAPLLDAQ----LCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLT 60 TDKR AP A LCF+LYS S + ++LYR LL L +TY QYLV++ LW +D T Sbjct: 2 TDKRIDAPDTRADVTGLLCFSLYSASHAFTQLYRSLLDKLSLTYPQYLVMLTLWHRDGQT 61 Query: 61 VSEIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPR 120 V E+G+ L LDS+TLTPLLKR++A GL+TR R DER+V+I LT +GD LR A ++ R Sbjct: 62 VKELGKTLFLDSSTLTPLLKRLDAAGLITRSRNPRDEREVLIHLTQKGDDLRTSASDVGR 121 Query: 121 EVLRATESTAAELAAIKEELMQLRARL 147 + A A + ++K L +R ++ Sbjct: 122 CIEEAVGLDAETVQSVKASLDAIRDKI 148