BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0049.p (122 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0413_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa 78 4e-15 all0929 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 78 6e-15 slr1042 [T] COG0784 FOG Syn Synechocystis 77 1e-14 alr3671_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 76 2e-14 CC2463 [T] COG0784 FOG Ccr Caulobacter vibrioides 76 2e-14 all4963_4 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 74 8e-14 XF1952_3 [T] COG0784 FOG Xfa Xylella fastidiosa 9a5c 72 3e-13 all1736 [TK] COG2197 Response regulator containing a CheY-like r... 72 4e-13 RSc0672_3 [T] COG0784 FOG Rso Ralstonia solanacearum 71 7e-13 all3764_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 70 1e-12 >PA0413_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 134 Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 9 VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68 V+VV+D R + +L G++V+ A DGV+AIA +Q P ++L D+ MPRMDG E+ Sbjct: 15 VMVVDDSVTVRKVTTRLLERNGMNVLTAKDGVDAIAQLQEHRPDILLLDIEMPRMDGFEV 74 Query: 69 ARYIKSDERFGHIPVALISANLPAAN---ARVPEISAFLLKPCSVDHLLTTVTQLL 121 A ++ DER G++P+ +I++ + A ++ +L KP LL + L+ Sbjct: 75 ATLVRHDERLGNLPIIMITSRTGEKHRERALGIGVNQYLGKPYQETELLEAIQSLV 130 >all0929 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 121 Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 8 TVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGME 67 TVL+VED R+++ ++L GL+V A+DG+EA+ ++ + P LV+ D+ MP+M+G E Sbjct: 3 TVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNGYE 62 Query: 68 LARYIKSDERFGHIPVALISAN---LPAANARVPEISAFLLKPCSVDHLLTTVTQLLR 122 + R +KSD + ++PV + S+ A++ KP L+ TV QLLR Sbjct: 63 VCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >slr1042 [T] COG0784 FOG Syn Synechocystis Length = 147 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 9 VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68 VL+VED R+++ IL G V A DGVEA+ +Q+ +P LV+ D+ MPRM+G E+ Sbjct: 30 VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89 Query: 69 ARYIKSDERFGHIPVALISAN---LPAANARVPEISAFLLKPCSVDHLLTTVTQLLR 122 R IKSD + ++PV + S+ A++ KP L+ T+ QLLR Sbjct: 90 CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146 >alr3671_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 154 Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 4 SKQKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRM 63 S+ +LVV+D PD+ L+ IL +G +V A +G+ A+A +Q+ LVL DL MP M Sbjct: 20 SQSGKILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGM 79 Query: 64 DGMELARYIKSDERF-GHIPVALISANLPAANARVPEISA--FLLKPCSVDHLLTTVTQL 120 DG E+ R ++ + + +IP+ LI+A+ A ++ A F+ KP +VD LL V L Sbjct: 80 DGYEVTRRVRGEMKLPQYIPILLITAHDAPNVAHGLDLGADDFIRKPVTVDELLARVRSL 139 Query: 121 LR 122 LR Sbjct: 140 LR 141 >CC2463 [T] COG0784 FOG Ccr Caulobacter vibrioides Length = 130 Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 7 KTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGM 66 K VL+VED+ + L ++L +G + +G+ A+++ + P L+L D+++P + G+ Sbjct: 8 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGL 67 Query: 67 ELARYIKSDERFGHIPVALISA-NLPAANARVPE--ISAFLLKPCSVDHLLTTVTQLL 121 E+ +++K D+ HIPV ++A + R+ E A++ KP SV H L T+ +LL Sbjct: 68 EVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 125 >all4963_4 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 120 Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 8 TVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGME 67 ++LVV+D+PD R + +IL G V A +G E + +Q P+L++TDL MP + G+E Sbjct: 2 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKVQELTPNLIVTDLMMPLVTGLE 61 Query: 68 LARYIKSDERFGHIPVALISANLPAANARVPEIS----AFLLKPCSVDHLLTTVTQLL 121 + R +++DE+ P+ L++A + R+ A+L KP + LL V LL Sbjct: 62 MIRMVRNDEKVKGTPIILLTAKVD-EETRIESTEHGADAYLAKPFNDRELLAEVRNLL 118 >XF1952_3 [T] COG0784 FOG Xfa Xylella fastidiosa 9a5c Length = 139 Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 1 MSGSKQKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRM 60 ++ S+ V+VV+D R + +L SV A DG+EA+ L++ + P L+L D+ M Sbjct: 9 VTQSQMPLVMVVDDSLTMRKVTSRVLERHNFSVSVARDGIEALELLEERIPDLMLLDIEM 68 Query: 61 PRMDGMELARYIKSDERFGHIPVALISANLPAAN-ARVPEISA--FLLKPCSVDHLLTTV 117 PRMDG EL +++D+RF IP+ +I++ + R EI +L KP L+ V Sbjct: 69 PRMDGYELVAAMRADDRFKSIPILMITSRSGDKHRQRAFEIGVQRYLGKPYQEFDLMKNV 128 Query: 118 TQLL 121 LL Sbjct: 129 YDLL 132 >all1736 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 231 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 9 VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68 +L+V+D P R+ + + L G SV AS+ E LMQ P LV++D+ MP++DG + Sbjct: 5 LLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQF 64 Query: 69 ARYIKSDERFGHIPVALISANLPAAN---ARVPEISAFLLKPCSVDHLLTTVTQLL 121 + ++ D RF +PV ++A ++ + A+L KP D L+ V LL Sbjct: 65 LKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120 >RSc0672_3 [T] COG0784 FOG Rso Ralstonia solanacearum Length = 136 Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 4 SKQKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRM 63 + Q V+VV+D R + +L G + A DGV+A+ +Q P +L D+ MP M Sbjct: 5 ATQPIVMVVDDSLTVRKVTQRLLTRSGYQAVLARDGVDALRQLQEVTPDAMLVDIEMPHM 64 Query: 64 DGMELARYIKSDERFGHIPVALISANLPAANARVPE---ISAFLLKPCSVDHLLTTVTQL 120 DG +L R +++DER G +P+ +I++ + R ++ +L KP + D LL + L Sbjct: 65 DGFDLTRNVRADERIGAMPIIMITSRSADKHRRYAAEIGVNVYLGKPYNEDELLRHLRNL 124 Query: 121 L 121 + Sbjct: 125 I 125 >all3764_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 140 Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 9 VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68 +L V+D D+ L+ IL +G + ASDG+ A+ ++ P L+L D+ MP MDG E+ Sbjct: 12 ILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYEV 71 Query: 69 ARYIKSDERFGHIPVALISANLPAANARVPEISA--FLLKPCSVDHLLTTVTQLLR 122 R I+++ +IP+ LI+A ++ ++ A F+ KP D LL V LLR Sbjct: 72 TRRIRNNPALSYIPILLITAFHESSVVEGLDVGADDFIRKPFDTDELLARVRSLLR 127