BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0036.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 178 1e-44 AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium t... 178 1e-44 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 169 5e-42 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 160 2e-39 RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 149 8e-36 PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 147 3e-35 mlr4184 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ... 146 5e-35 RSc3411 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 108 1e-23 BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodu... 103 3e-22 kdgR [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 102 7e-22 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 141/239 (58%) Query: 11 IQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 +++ D + G KG VI AF D P+LS ++V++ GL R+ ARR LLTL G A DG Sbjct: 1 MRETDFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDG 60 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K F L+PR+L LG +YL +P + P L RL+Q + ES + S+LDG EIVY+ R + Sbjct: 61 KFFMLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQM 120 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEI 190 ++++ G+RLPAY + GRVLL +++E + LE+ L T D L +E+ Sbjct: 121 RVISINLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEEL 180 Query: 191 LTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPAL 249 +R QG+ + + + E+G+R IA+ V N G V+ AL++ + +A + + R +P + Sbjct: 181 RRIRAQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEM 239 >AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 144/243 (59%) Query: 7 VDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMA 66 + + + +RD++ GL KG VI AF ++ P+LS S+ AE GL R+ RR LLTL G A Sbjct: 15 LSMAVSERDMMGGLAKGLRVIEAFSAERPRLSISDAAEIAGLDRATTRRCLLTLSELGYA 74 Query: 67 ASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTR 126 A DGK F + P++L LG L + +P+ V P L RL++++ +ST+ S+LD EIVYV R Sbjct: 75 AYDGKFFTVTPKVLRLGTGCLATMPLPKIVQPLLDRLSEEIGQSTSVSILDEAEIVYVAR 134 Query: 127 VTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAAL 186 ++++ PG+RLPAY T+ GRVLL + + LE L+ T +TD AL Sbjct: 135 AAQQRVMSIALMPGSRLPAYCTSMGRVLLAAQPAERRRDILEASRLVARTEKTITDMDAL 194 Query: 187 FQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGV 246 EI +GY + + + E+G+R IA+ +K G+ + AL+V + S EE + R + Sbjct: 195 LAEIEVTGHRGYALIDQEVEIGLRSIAVPLKTVRGQTVAALNVGLAASVASMEELVERYL 254 Query: 247 PAL 249 PAL Sbjct: 255 PAL 257 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 141/248 (56%) Query: 11 IQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 +++ D + G +G VI AF P+LS ++ A+ GL R+ RR LLTL G A DG Sbjct: 1 MRETDFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDG 60 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K F L P+ L LG +YL + +P V P+L +L ++ +S + S+LDG EIVYV R + Sbjct: 61 KFFTLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQR 120 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEI 190 ++++ PG+RLPAY + GRVLL +AE + L R L +T + TD L E+ Sbjct: 121 RVMSINLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTEL 180 Query: 191 LTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPALQ 250 +R +GY I + + E+G+ IA+ V N G+V+ AL++ ++ A E R +P L+ Sbjct: 181 RRVRDEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLR 240 Query: 251 TTANTLMM 258 T L + Sbjct: 241 ETQAALRL 248 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 146/256 (57%), Gaps = 8/256 (3%) Query: 1 MIDQSPVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTL 60 M++QSP D ++ +G VI +F +D+P + SEVA + GL+R+ ARR+L TL Sbjct: 1 MVEQSP--------DFVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTL 52 Query: 61 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE 120 G A ++ +F L PR+L LG SYL + +P P L+ L++Q+ ES++ S+LDG + Sbjct: 53 TDLGYAVNNDSRFQLTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTD 112 Query: 121 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM 180 I+YV RV +++ GTR PAY T+ GR++L + E+ L T ++ Sbjct: 113 IIYVCRVPVRRIMTVNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSL 172 Query: 181 TDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREE 240 T A++ +EI+ R +G+ + + + E G+R +A + N G V+ +++V++ A+ S E+ Sbjct: 173 TSIASIREEIIATRERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVED 232 Query: 241 AIARGVPALQTTANTL 256 +P L TA + Sbjct: 233 IRKLVLPQLLETAQAI 248 >RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 275 Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 127/215 (59%), Gaps = 2/215 (0%) Query: 17 IEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFWLM 76 ++ +G VI AF+++ P + SEVAE GLTR+ ARR LLTLV G + +G+ F L Sbjct: 28 VQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYVSFEGRLFRLT 87 Query: 77 PRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNAG 136 PR+L+LG +YL S P ++ L Q + ES + S+LDG EIVYV RV +++ Sbjct: 88 PRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYVLRVPTQKIIALN 147 Query: 137 FEPGTRLPAYTTTAGRVLL-GMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTMRR 195 G+RLPA+ T+ GRVLL G+ ED + L + P T +T+ AL I +R Sbjct: 148 LSVGSRLPAFCTSMGRVLLSGLPED-RLDIVLRESDRRPRTQRTITEVDALKDVIAGVRA 206 Query: 196 QGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVT 230 QG+ + + + E G+ ++ ++NR G +I A++++ Sbjct: 207 QGWALVDQELEEGLISLSTPIRNRAGDIIAAMNIS 241 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 136/236 (57%), Gaps = 1/236 (0%) Query: 15 DLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFW 74 + + L +G VI AF L+ ++++ R + R+A RR L TL+ G A +DG+ + Sbjct: 31 NFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMQLGYATTDGRTYS 90 Query: 75 LMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTR-VTAAQLV 133 L+P++L LG +YL S + P L RL++QL E+ + + L+GD+++Y+ R T +L+ Sbjct: 91 LLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDDVLYIARSATPQRLI 150 Query: 134 NAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTM 193 + G+RLPAY T+ GR+LL +D + AY V + T + L ++ + Sbjct: 151 SVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRTLYTPETLLPCLVEI 210 Query: 194 RRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPAL 249 RRQG+ I + + E+G+R +A+ V++ G V+ AL+V ++ SR E +R +P L Sbjct: 211 RRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRAELESRFLPLL 266 >mlr4184 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti Length = 256 Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%) Query: 13 KRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKK 72 RD + L +G V+ ++ +E+AE+ GLTR+ ARR+LLTLV TG A DG+ Sbjct: 7 SRDHVGSLERGLAVMEILARHPSGMTLTEMAEQAGLTRAGARRFLLTLVATGYATQDGRM 66 Query: 73 FWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQL 132 F L PRLL + +++L + P ++ + QL E+ + ++L G ++VYV R+ ++ Sbjct: 67 FSLSPRLLAVARTWLGGGSLWSFAAPIMRTVAAQLNEACSAAILSGQDVVYVARIPGRRI 126 Query: 133 VNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILT 192 ++ + GTRLPAY T+ GR+LL E+ +L + + T +TD L + I Sbjct: 127 LSVSLDVGTRLPAYCTSMGRMLLAGLAPEELDEFLHQATIERRTPKTITDIGLLAEAIGK 186 Query: 193 MRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPAL 249 R G+ I + + E+G+R IA+ +++R G + A++V++ A S E +PAL Sbjct: 187 ARADGFAIVDEELELGLRSIAVPIRDRAGNTVAAINVSTQSARFSVAEMEREILPAL 243 >RSc3411 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 262 Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 3/237 (1%) Query: 18 EGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGK--KFWL 75 + L KG V+ AF++ ++ +EVA G+ +S+A+R + TL H G K ++ L Sbjct: 14 QSLEKGLAVLGAFNAQRRTMTIAEVAAVAGINKSSAQRMVYTLEHLGYLRKHPKTRRYQL 73 Query: 76 MPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNA 135 P + +G +YL + + PFL LT+ E++ + D E+VYV R +AQ V Sbjct: 74 TPAAMKIGFNYLAADTLIDVANPFLAELTKVTTETSCLTEPDQREMVYVARFVSAQFVPV 133 Query: 136 GFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTMRR 195 G+R+P Y T +GR L + E +A +E + HT T+ A + + R+ Sbjct: 134 HMPIGSRIPMYCTASGRAYLSALPEPEARAIVETSERVAHTMHTRTEVADILATLREARQ 193 Query: 196 QGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIAR-GVPALQT 251 +GY I + +G +A + NGR +GA+ + + + E+ A+ G P LQ Sbjct: 194 RGYAINREELFLGDMTVAAPIVGGNGRPLGAIHLVAPTGRWTAEDMEAKLGPPLLQC 250 >BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodurans Length = 251 Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 2/226 (0%) Query: 16 LIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASD--GKKF 73 +++ + + +I+ L ++VA ++ LT+S+A + L TLV G D KK+ Sbjct: 1 MVKSVDRALTIISLVSEHKQGLGVTDVAAKLSLTKSSAYKLLATLVEHGFIEQDEETKKY 60 Query: 74 WLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLV 133 L R L L + LES + R PFL++L E + L D E+VY+ ++ + + Sbjct: 61 RLGYRYLELSATLLESIDIRRQARPFLEQLEATTNEVVHLVLYDQGEMVYIDKLEGTKTL 120 Query: 134 NAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTM 193 + G R P + T+ G+V++ + + +ER L PHT +TDK +E+ + Sbjct: 121 RTHSKIGRRAPIHCTSVGKVIMAYLPEKVQISLIERYGLPPHTERTITDKETFMKELEKI 180 Query: 194 RRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSRE 239 R +GYG + E G+ IA + + G + A+S++ S+E Sbjct: 181 RLEGYGYEMEENEPGITCIAAPIFDYQGAITAAVSISGPSIRLSKE 226 >kdgR [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 Length = 263 Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 5/251 (1%) Query: 8 DLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAA 67 DLD Q D + ++K F ++ A + ++ +E+++RV +++S R+L T+ G A Sbjct: 5 DLDKQP-DSVSSVLKVFGILQAL-GEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVA 62 Query: 68 SDGK--KFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 +G+ K+ L +L LG L++ + R+ ++ L++ +E+ + LD D IVY+ Sbjct: 63 QEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVYIH 122 Query: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAA 185 ++ + + G R P Y+T G+VLL R+ E++ LE V T +T A Sbjct: 123 KIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEA 182 Query: 186 LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARG 245 L + +R QGYG + E G+R IA+ V +R G VI LS++ S EE + Sbjct: 183 LLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFS-EERLQEY 241 Query: 246 VPALQTTANTL 256 V L T A + Sbjct: 242 VAMLHTAARKI 252