BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0028.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3087 [TK] COG0745 Response regulators consisting of a CheY-li... 262 4e-70 ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like... 256 3e-68 ECs0722 [TK] COG0745 Response regulators consisting of a CheY-li... 256 3e-68 kdpE [TK] COG0745 Response regulators consisting of a CheY-like ... 254 8e-68 YPO2688 [TK] COG0745 Response regulators consisting of a CheY-li... 253 2e-67 STM0702 [TK] COG0745 Response regulators consisting of a CheY-li... 252 5e-67 CAC3677 [TK] COG0745 Response regulators consisting of a CheY-li... 218 1e-56 PA1637 [TK] COG0745 Response regulators consisting of a CheY-lik... 214 2e-55 SMa2325 [TK] COG0745 Response regulators consisting of a CheY-li... 211 1e-54 CC1595 [TK] COG0745 Response regulators consisting of a CheY-lik... 202 6e-52 >RSc3087 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 234 Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/225 (58%), Positives = 166/225 (73%), Gaps = 2/225 (0%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 ++ I+D+PHIR+ VR+ALE EG V EA G+ EAGTR+PD +ILDLGLPDGDG Sbjct: 11 TVLVIDDEPHIRRFVRAALEAEGCEVFEADRVARGLIEAGTRQPDAVILDLGLPDGDGMS 70 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACA 126 +I ++R W+ VP+++LSAR E +K++ALDAGADDYL KPFG+ EL+AR+R LRRHA Sbjct: 71 LIRDLRTWTEVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130 Query: 127 SSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 G S + G+V VDL R VSR+GE +HLT IEYRLL+ LL G V+THR+LL Sbjct: 131 GEDGGSIIAF--GDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLRE 188 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVA 231 WGP+H++ HYLRIYM LR KLERD A+P H+LTE+GVGYR A Sbjct: 189 VWGPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGYRFA 233 >ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 225 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 124/224 (55%), Positives = 165/224 (73%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V+EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 S+ + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRF 223 >ECs0722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 225 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 124/224 (55%), Positives = 165/224 (73%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V+EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 S+ + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRF 223 >kdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 225 Score = 254 bits (650), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 165/224 (73%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH+ Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 Query: 127 SSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 ++ + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 123 TA---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 >YPO2688 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 209 Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/210 (60%), Positives = 155/210 (73%), Gaps = 3/210 (1%) Query: 21 VRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQVISEIRNWSSVPIV 80 +R ALE EG+ V E+++ + G+ EAGTRKPDLIILDLGLPDGDG I ++R WS++PI+ Sbjct: 1 MRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNYIQDLRQWSAIPII 60 Query: 81 ILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACASSAGQSSGRYRLGE 140 +LSAR E +KV ALDAGADDYL KPFG+ ELLAR+R LRRH+ AS Q S + Sbjct: 61 VLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGAS---QESPLVNFAD 117 Query: 141 VVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAGWGPSHAEDGHYLR 200 + VDL R V+R GE LHLT IE+RLL+ LL +AG+VIT RQLL WGP++ E HYLR Sbjct: 118 ISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWGPNYVEHSHYLR 177 Query: 201 IYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 IYM LRQKLE D +P H+LTE GVGYR Sbjct: 178 IYMGHLRQKLEADPTRPKHLLTETGVGYRF 207 >STM0702 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 225 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 162/224 (72%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V+EA++ + G+ EA TRKPDLIILDLGLPDGDG Sbjct: 3 NVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGID 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACA 126 I ++R WS++P+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRHA + Sbjct: 63 FIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHAAS 122 Query: 127 SSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 A R V VDL AR + R E +HLT IE+RLL+ LL + G+V+T RQLL Sbjct: 123 PCADPI---VRFSGVTVDLAARLIHRGDEEIHLTPIEFRLLAVLLNNTGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D +P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRF 223 >CAC3677 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Cac Clostridium acetobutylicum Length = 232 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 103/225 (45%), Positives = 146/225 (64%) Query: 8 IVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQV 67 I+ +EDD IR + +AL +G+ E E + + PDLI+LDLGLPD DG +V Sbjct: 7 ILVVEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEV 66 Query: 68 ISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACAS 127 I +IR WS VPI+I+SAR E +KVEALD GADDY+ KPFG+ ELLAR+R LR Sbjct: 67 IGKIREWSKVPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNAGK 126 Query: 128 SAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAG 187 + +S +++ + VD R VS +G+ +HLT IEY+++ L + +GRV+TH ++ Sbjct: 127 AKDKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIINEI 186 Query: 188 WGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVAD 232 WG S + LR++M LR+K+E+D AQP +I TE+GVGYR+ D Sbjct: 187 WGASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRLID 231 >PA1637 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 230 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 151/232 (65%), Gaps = 3/232 (1%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + +I+ I+D+P IRK +R +L +G+ V EA + EG+ +A +PDL++LDLGLP Sbjct: 1 MTQLQNSILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG+ ++ ++R WS VP+++LS R E EKV ALD GA+DY+ KPFG+ E LAR+R L Sbjct: 61 DRDGQDILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLL 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 R+ A S S +G + VD R V+ G + LT+ EY +L+ L R GRV+T Sbjct: 121 RQAAQGESPEASVA---VGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQ 177 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVAD 232 +QLL WGP+H ED HYLR+ + LRQKL D A P ++TE GVGYR+ D Sbjct: 178 QQLLKDIWGPTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRD 229 >SMa2325 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 230 Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/225 (50%), Positives = 149/225 (66%), Gaps = 3/225 (1%) Query: 5 AGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDG 64 A I+ +D+P I++ +R AL G+ V EA + + + A T PD++ILDLGLPD DG Sbjct: 3 AERILVADDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGLPDMDG 62 Query: 65 KQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHA 124 K V++ IR WS VPI+ILSAR +ESEK+ ALD GADDY+ KPFG+ EL AR+RA L RH Sbjct: 63 KDVVANIRAWSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAAL-RHR 121 Query: 125 CASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLL 184 + GQ+ + + +D+ R V+R G AL LT EY LL L AGRV+THR LL Sbjct: 122 IQMAGGQA--QLSADGLSIDMVKRVVTRDGAALRLTPKEYDLLVMLAHHAGRVVTHRTLL 179 Query: 185 VAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYR 229 + WG +H ED HYLR+++ +LR K+ERD P + TE GVGYR Sbjct: 180 TSVWGLAHGEDLHYLRVFIGQLRGKIERDPGNPKIVRTEPGVGYR 224 >CC1595 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ccr Caulobacter vibrioides Length = 257 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 150/223 (67%), Gaps = 3/223 (1%) Query: 8 IVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQV 67 I+ I+D+P I + + AL+ G+ A S +EG+ PD ++LDLGLPD DGK V Sbjct: 33 ILVIDDEPQIHRFLGPALDAAGYEALRADSGQEGLRGIALWSPDAVVLDLGLPDMDGKDV 92 Query: 68 ISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACAS 127 + + R + PI+ILSAR +E EK+EALD GA+DY+ KPFG+ ELLAR+R LR+ A + Sbjct: 93 LEKARAFYEGPILILSARDREVEKIEALDRGANDYVEKPFGVGELLARLRVALRQSAASK 152 Query: 128 SAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAG 187 + +G G+V++DL R V++ G A+ L+ E+ LL+ L G+V+TH++LLV Sbjct: 153 ---RPTGPLTFGDVIIDLDLRLVTKAGAAVKLSPKEFELLARLALSPGKVLTHKELLVGI 209 Query: 188 WGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WG SHA+D YLR+++ +LRQKLE D+A P ILTE GVGYR+ Sbjct: 210 WGASHADDTQYLRVFVGQLRQKLEDDSAHPRLILTEPGVGYRL 252