BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0005.p         (219 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2832 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom...   198   6e-51
VC1226 [QR] COG0500 SAM-dependent methyltransferases Vch Vibrio ...   143   3e-34

>PA2832 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas
           aeruginosa
          Length = 218

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 135/217 (62%)

Query: 1   MEAEFWLERWRDGRTHFHQSRVTPLLQKYWLSLALPAGSTVLVPLCGKSLDMLWLAEQGH 60
           M+A+FW  RW + +  FH   + P L ++   L L AG  +LVPLCGK+LD+ WLA QG 
Sbjct: 1   MQADFWHARWANNQIGFHLDEINPYLMRHLSRLRLQAGEQILVPLCGKTLDLAWLAAQGL 60

Query: 61  RVLGVELSELAITQFFSEHQLVPLVHESAQGRHYAAGNIELICGDIFALEEATLAACAGA 120
            VLGVELSE A++ FF EH L P + +    R Y    I L+ GD FAL+   LA C   
Sbjct: 61  EVLGVELSEKAVSDFFEEHDLHPEIDQLDGFRRYRVAGITLLQGDFFALQAEHLAQCRAF 120

Query: 121 YDRAALIALPPAMRARYVTEVYGRLPAQARSLLITLEYDQQKMDGPPFSVSEEEVLRLYA 180
           YDRAALIALPP MR RY   +   LP ++  LL+T++Y Q +M GPPF+V +EEV   YA
Sbjct: 121 YDRAALIALPPEMRERYAGHLQAVLPTRSLGLLVTIDYPQAEMAGPPFAVPDEEVRGYYA 180

Query: 181 PHSEAQAIDRRDILDKEPKFLERGLSALETVVYRLQR 217
                + ++R D+L    KFLERG+S L+  VY L+R
Sbjct: 181 GGWRIEELERGDVLGVNWKFLERGVSWLDEAVYLLER 217


>VC1226 [QR] COG0500 SAM-dependent methyltransferases Vch Vibrio cholerae
          Length = 218

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 101/179 (56%), Gaps = 4/179 (2%)

Query: 2   EAEFWLERWRDGRTHFHQSRVTPLLQKYWLSLALPAGSTVLVPLCGKSLDMLWLAEQGHR 61
           + EFW  +W   +  FH   V PLL ++W  LA      VLVPLCGKS D++WLA Q   
Sbjct: 3   DPEFWHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDS 62

Query: 62  VLGVELSELAITQFFSEHQLVPLVHE-SAQGRHYAAGNIELICGDIFALEEATLAACAGA 120
           V GVELS++A+  FF+EH   P V   +AQ   Y    + L  GD F    A + +    
Sbjct: 63  VQGVELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT---APVESVDLV 119

Query: 121 YDRAALIALPPAMRARYVTEVYGRLPAQARSLLITLEYDQQKMDGPPFSVSEEEVLRLY 179
           YDRAAL+ALP  MRA Y   V   L    R LL++++Y Q ++ GPPFSV E E+  L+
Sbjct: 120 YDRAALVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAEIRTLF 178