BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0242.p (157 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0406 [GT] COG1762 Phosphotransferase system mannitol/fructose... 210 9e-55 NMB0736 [GT] COG1762 Phosphotransferase system mannitol/fructose... 138 4e-33 NMA0946 [GT] COG1762 Phosphotransferase system mannitol/fructose... 138 5e-33 PA4464 [GT] COG1762 Phosphotransferase system mannitol/fructose-... 113 2e-25 mll3194 [GT] COG1762 Phosphotransferase system mannitol/fructose... 96 5e-20 PM0170 [GT] COG1762 Phosphotransferase system mannitol/fructose-... 95 5e-20 AGc576 [GT] COG1762 Phosphotransferase system mannitol/fructose-... 92 3e-19 BMEI1786 [GT] COG1762 Phosphotransferase system mannitol/fructos... 92 4e-19 SMc01141 [GT] COG1762 Phosphotransferase system mannitol/fructos... 89 3e-18 VC2531 [GT] COG1762 Phosphotransferase system mannitol/fructose-... 89 4e-18 >RSc0406 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Rso Ralstonia solanacearum Length = 151 Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 98/150 (65%), Positives = 118/150 (78%) Query: 1 MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60 M LAK+L P N+ LD+ V+SKKR FEQAGL FENN G+AR+TV++NLFARE LGSTGLG Sbjct: 1 MNRLAKLLPPGNIALDVSVTSKKRVFEQAGLLFENNHGVARATVTDNLFARESLGSTGLG 60 Query: 61 HGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEI 120 GVA+PHGRIKGLK PLA FMRL+ P+PFESPDG+PV LL+FLL+P+ TQQHLEILSEI Sbjct: 61 AGVAIPHGRIKGLKQPLAAFMRLSEPVPFESPDGKPVSLLIFLLVPEQATQQHLEILSEI 120 Query: 121 AEMFSDDAFRNELTHEPDPAVVHARIVTWQ 150 A++ SD R LT P P +H + W+ Sbjct: 121 AQLLSDRDMREGLTTLPSPEAIHQLLTDWR 150 >NMB0736 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Nme Neisseria meningitidis MC58 Length = 149 Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 66/133 (49%), Positives = 93/133 (69%) Query: 1 MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60 M+ + +IL ++VLD+EV SKKR FE+AGL E S ++ + V E LFARE+LGSTGLG Sbjct: 1 MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADVFECLFAREKLGSTGLG 60 Query: 61 HGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEI 120 GVA+PHGR G+K F+R P+ F++PDG+PV L+ LL+P++ T +HLE+LS++ Sbjct: 61 QGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLIFILLVPENATGEHLEVLSKL 120 Query: 121 AEMFSDDAFRNEL 133 A FS + R L Sbjct: 121 AGKFSQKSIRESL 133 >NMA0946 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) NmA Neisseria meningitidis Z2491 Length = 149 Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 66/133 (49%), Positives = 93/133 (69%) Query: 1 MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60 M+ + +IL ++VLD+EV SKKR FE+AGL E S ++ + V E LFARE+LGSTGLG Sbjct: 1 MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADVFECLFAREKLGSTGLG 60 Query: 61 HGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEI 120 GVA+PHGR G+K F+R P+ F++PDG+PV L+ LL+P++ T +HLE+LS++ Sbjct: 61 QGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFILLVPENATGEHLEVLSKL 120 Query: 121 AEMFSDDAFRNEL 133 A FS + R L Sbjct: 121 AGKFSQKSIRESL 133 >PA4464 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Pae Pseudomonas aeruginosa Length = 154 Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 1 MTNLAKILSPENVVLDLEVSSKKRAFEQ-AGLTFENNSGIARSTVSENLFARERLGSTGL 59 M L +IL+P ++++ SKKR EQ A L T+ ENL ARE+LGSTG Sbjct: 1 MIRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARELPEFDAQTIFENLVAREKLGSTGF 60 Query: 60 GHGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSE 119 G+G+A+PH R+ G ++P++ + L AP+ F++ DG PV LL LL+P+ T++HLE+L + Sbjct: 61 GNGIAIPHCRLSGCQSPISAVLHLDAPVDFDALDGAPVDLLFVLLVPEAATEEHLELLRQ 120 Query: 120 IAEMFSDDAFRNELTHEPDPAVVHARIVTWQT 151 IA M R+ L P ++ +V Q Sbjct: 121 IAAMLDRADVRDRLRSAPTAEALYQIVVDVQN 152 >mll3194 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Mlo Mesorhizobium loti Length = 154 Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 82/150 (54%) Query: 3 NLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLGHG 62 +L+ ++S ++ L+ +SKK+ + SGI V + + RERLGSTG+G+G Sbjct: 2 DLSDLISVPAILPALKANSKKQLLQLLSERAAAISGIPEREVFDTILQRERLGSTGVGNG 61 Query: 63 VAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEIAE 122 +A+PHG++ G+K +F RL P+ FES D QPV L+ LL P+ HL+ LS IA Sbjct: 62 IAIPHGKLAGVKRIAGVFARLETPVDFESLDDQPVDLVFLLLAPEGAGADHLKALSRIAR 121 Query: 123 MFSDDAFRNELTHEPDPAVVHARIVTWQTS 152 + D ++ D +HA + Q S Sbjct: 122 VLRDADTVAKIRGTRDATAIHALLSDTQAS 151 >PM0170 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Pmu Pasteurella multocida Length = 172 Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 10/141 (7%) Query: 1 MTNLAKILSPENVVLDLEVSSKKRAFE------QAGLTFENNSGIARSTVSENLFARERL 54 M ++L PEN+ L SSKKR FE + EN A E L +RE++ Sbjct: 1 MIKFTELLKPENIRQGLICSSKKRLFEIITQVIADQIQLEN----AEQLCFECLLSREKM 56 Query: 55 GSTGLGHGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHL 114 G++GLG+G+A+P RI PLA+F+ L +P+ +ES D + V L++ +L+P+ + ++++ Sbjct: 57 GNSGLGNGIAMPKARIPEGNQPLAVFIHLDSPVDYESADHRDVDLILAILVPEQLCERYI 116 Query: 115 EILSEIAEMFSDDAFRNELTH 135 L EIAE FSD +L + Sbjct: 117 SALPEIAEKFSDKTLCKQLRN 137 >AGc576 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 153 Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 72/123 (58%) Query: 4 LAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLGHGV 63 LA +L + ++ L+V+SKK+ ++ +G++ V + + RE+LGSTG+GHG+ Sbjct: 3 LADLLQQDAIIPALKVNSKKQLLQELAAKAARITGVSEREVFDVILQREKLGSTGVGHGI 62 Query: 64 AVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEIAEM 123 A+PHG++ + +F RL P+ FE+ D QPV L+ LL P+ HL+ LS IA Sbjct: 63 AIPHGKLNSIHQITGVFARLETPVDFEALDDQPVDLVFLLLAPEGAGADHLKALSRIARA 122 Query: 124 FSD 126 D Sbjct: 123 LRD 125 >BMEI1786 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Bme Brucella melitensis Length = 154 Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 81/150 (54%) Query: 3 NLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLGHG 62 +L+ ++ P ++ L+ SSKK+ + +G+ V E + RERLGSTG+G+G Sbjct: 2 DLSDLIQPGAIIPALKASSKKQLLQILSEKAAELTGLPEREVFETVLQRERLGSTGVGNG 61 Query: 63 VAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEIAE 122 VA+PHG++ + +F RL P+ FE+ D QPV L+ LL P++ HL+ LS IA Sbjct: 62 VAIPHGKLASINKIAGIFARLETPVDFEALDDQPVDLVFLLLAPENAGADHLKALSRIAR 121 Query: 123 MFSDDAFRNELTHEPDPAVVHARIVTWQTS 152 + D +L D +++ + TS Sbjct: 122 LLRDPDMVAKLRGTHDAQALYSFLTAHPTS 151 >SMc01141 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Sme Sinorhizobium meliloti Length = 154 Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 72/123 (58%) Query: 4 LAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLGHGV 63 LA +L ++ + +SKK+ ++ +G+ + + + RERLGSTG+G+G+ Sbjct: 3 LAGLLHQNAIIPAMRANSKKQLLQELAAKASKLTGLPEREIFDVILQRERLGSTGVGNGI 62 Query: 64 AVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEIAEM 123 A+PHG++ L + + +F RL AP+ FE+ D QPV L+ LL P+ HL+ LS IA + Sbjct: 63 AIPHGKLSNLPSIVGIFARLDAPVDFEALDDQPVDLVFLLLAPEGAGADHLKALSRIARV 122 Query: 124 FSD 126 D Sbjct: 123 LRD 125 >VC2531 [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Vch Vibrio cholerae Length = 148 Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 79/130 (60%) Query: 4 LAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLGHGV 63 L+++LS + ++ SSKKRA E ++G + + E + +RE++GSTG+G+G+ Sbjct: 3 LSEVLSLDCTKSAVQCSSKKRALEIISEIAALHTGQNATELFECMLSREKMGSTGIGNGI 62 Query: 64 AVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEIAEM 123 A+PH R+ + +A+ ++ PI F+S D +PV LL LL+P+ ++HL+ L+ +AE Sbjct: 63 AIPHARMSDSENAVAVLLQCEEPIEFDSIDNRPVDLLFALLVPEDQCKEHLKTLACMAER 122 Query: 124 FSDDAFRNEL 133 +D +L Sbjct: 123 LNDKQILKQL 132