BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0241.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0405 [T] COG1493 Serine kinase of the HPr protein, regulates ...   111   3e-25
NMA0947 [T] COG1493 Serine kinase of the HPr protein, regulates ...    79   2e-15
NMB0737 [T] COG1493 Serine kinase of the HPr protein, regulates ...    79   3e-15
XF1406 [T] COG1493 Serine kinase of the HPr protein, regulates c...    69   3e-12

>RSc0405 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism Rso Ralstonia solanacearum
          Length = 324

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 4/119 (3%)

Query: 5   SALSIQQLYEENRESLQLGWFAGFPGGERLISGD----AVSASDQVGHLNLIHPGRIQVF 60
           + ++ Q ++++N   L+L W AG  G +R    D    A SA+D VGHLNLIHP RIQV 
Sbjct: 4   TGVTAQSIFDDNAADLKLSWVAGLEGADRAFDVDFAKEATSAADLVGHLNLIHPNRIQVL 63

Query: 61  GHQEIEYYDRLSNTSRAYQTAELVTGEPPAFIIAQGLSTPPDILAVCDEKNIPLFSTPL 119
           G  EI YY RLS  +R  Q  EL+  EPP  ++A G+  PPD+   C   + PLF++P+
Sbjct: 64  GKPEITYYQRLSEENRKRQMGELILLEPPFLVVADGVDPPPDLELRCTRSSTPLFTSPI 122


>NMA0947 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism NmA Neisseria meningitidis Z2491
          Length = 320

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 6   ALSIQQLYEENRESLQLGWFAGFPGGERLISGDAVS-ASDQVGHLNLIHPGRIQVFGHQE 64
           ++S+++L+++N+  LQL W AG  G +  I  +A       VGHLN IHP +IQV G  E
Sbjct: 3   SISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALVGHLNFIHPNQIQVVGLAE 62

Query: 65  IEYYDRLSNTSRAYQTAELVTGEPPAFIIAQGLSTPPDILAVCDEKNIPLFSTPL 119
            EY +RL +    YQ  +L        I+A GL   P +   C + +IPL ++ L
Sbjct: 63  SEYLNRLESGETGYQFGDLFDISMSLVIVANGLPVSPGLRDYCHKNDIPLLTSKL 117


>NMB0737 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism Nme Neisseria meningitidis MC58
          Length = 320

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 6   ALSIQQLYEENRESLQLGWFAGFPGGERLISGDAVS-ASDQVGHLNLIHPGRIQVFGHQE 64
           ++S+++L+++N+  LQL W AG  G +  I  +A       VGHLN IHP +IQV G  E
Sbjct: 3   SISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALVGHLNFIHPNQIQVVGLAE 62

Query: 65  IEYYDRLSNTSRAYQTAELVTGEPPAFIIAQGLSTPPDILAVCDEKNIPLFSTPL 119
            EY +RL +    YQ  +L        I+A GL   P +   C + +IPL ++ L
Sbjct: 63  SEYLNRLESGETGYQFGDLFDISMSLVIVANGLPVSPGLRDYCHKNDIPLLTSKL 117


>XF1406 [T] COG1493 Serine kinase of the HPr protein, regulates
           carbohydrate metabolism Xfa Xylella fastidiosa 9a5c
          Length = 316

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 2/116 (1%)

Query: 5   SALSIQQLYEENRESLQLGWFAGFPGGERLI-SGDAVSASDQV-GHLNLIHPGRIQVFGH 62
           ++++ ++L++  R+ L L W AG  G  R I SGD  +    + G+LN I+P ++Q+ G 
Sbjct: 3   TSITARELFDLQRDRLSLRWIAGQQGEHRQIDSGDTRARRPSLAGYLNTIYPNKVQILGT 62

Query: 63  QEIEYYDRLSNTSRAYQTAELVTGEPPAFIIAQGLSTPPDILAVCDEKNIPLFSTP 118
           +E+ + D L    R     +++  +P   +I++  S P D+    D   IPL+ +P
Sbjct: 63  EELTWLDSLEPNKRKETIEKIIQFQPLTLVISKNQSCPEDMRTAADNSQIPLWVSP 118