BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0215.p (68 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum 120 9e-28 NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitid... 119 2e-27 NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitid... 118 3e-27 RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum 116 1e-26 RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum 104 6e-23 XF2352 [K] COG1278 Cold shock proteins Xfa Xylella fastidiosa 9a5c 98 4e-21 STM0943 [K] COG1278 Cold shock proteins Sty Salmonella typhimuri... 96 2e-20 YPO1366 [K] COG1278 Cold shock proteins Ype Yersinia pestis 96 3e-20 cspD [K] COG1278 Cold shock proteins Eco Escherichia coli K12 94 6e-20 ZcspD [K] COG1278 Cold shock proteins EcZ Escherichia coli O157:... 94 6e-20 >RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum Length = 67 Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 58/67 (86%), Positives = 60/67 (89%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAI GFK+LKE QRVSFE+T GPKGKQ Sbjct: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPKGKQ 60 Query: 61 ASNIVPA 67 ASNI A Sbjct: 61 ASNIQAA 67 >NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitidis Z2491 Length = 67 Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/67 (85%), Positives = 61/67 (91%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATG VKWFNDAKGFGFITPDEGGEDLFAHFSAI +GFK+LKE QRVSF+VTTGPKGKQ Sbjct: 1 MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGPKGKQ 60 Query: 61 ASNIVPA 67 A+NI A Sbjct: 61 AANIQAA 67 >NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitidis MC58 Length = 67 Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/67 (85%), Positives = 60/67 (89%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATG VKWFNDAKGFGFITPDEGGEDLFAHFSAI GFK+LKE QRVSF+VTTGPKGKQ Sbjct: 1 MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKGKQ 60 Query: 61 ASNIVPA 67 A+NI A Sbjct: 61 AANIQAA 67 >RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum Length = 67 Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/67 (82%), Positives = 61/67 (91%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MA GTVKWFNDAKGFGFI+PDEGGE+LFAHFSAIQ NGFK+LKE QRV+F+VT GPKGKQ Sbjct: 1 MANGTVKWFNDAKGFGFISPDEGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPKGKQ 60 Query: 61 ASNIVPA 67 A+NI A Sbjct: 61 ATNIQAA 67 >RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum Length = 67 Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 50/66 (75%), Positives = 55/66 (83%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 MATGTVKWFN+ KGFGFITPD GG DLFAHFS IQ +GFK+LK+ Q+VSFEV GPKG Q Sbjct: 1 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPKGLQ 60 Query: 61 ASNIVP 66 AS I P Sbjct: 61 ASGIKP 66 >XF2352 [K] COG1278 Cold shock proteins Xfa Xylella fastidiosa 9a5c Length = 67 Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 43/66 (65%), Positives = 54/66 (81%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M +GTVKWF+D KGFGFI+PD+G ++FAH+S I S GF+SL E QRV+++VT GPKG Q Sbjct: 1 MQSGTVKWFSDQKGFGFISPDDGTPEVFAHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQ 60 Query: 61 ASNIVP 66 ASNI P Sbjct: 61 ASNITP 66 >STM0943 [K] COG1278 Cold shock proteins Sty Salmonella typhimurium LT2 Length = 73 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/66 (65%), Positives = 52/66 (78%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M TGTVKWFN+AKGFGFI P+ GGED+FAH+S IQ +G+++LK Q V F+V GPKG Sbjct: 1 METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNH 60 Query: 61 ASNIVP 66 AS IVP Sbjct: 61 ASVIVP 66 >YPO1366 [K] COG1278 Cold shock proteins Ype Yersinia pestis Length = 87 Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 43/66 (65%), Positives = 53/66 (80%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M TGTVKWFN+AKGFGFI P+ GGED+FAH+S IQ +G+++LK Q V+F+V GPKG Sbjct: 1 METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQIVNFDVHEGPKGNH 60 Query: 61 ASNIVP 66 AS IVP Sbjct: 61 ASLIVP 66 >cspD [K] COG1278 Cold shock proteins Eco Escherichia coli K12 Length = 74 Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 42/67 (62%), Positives = 51/67 (76%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M GTVKWFN+AKGFGFI P+ GGED+FAH+S IQ +G+++LK Q V F+V GPKG Sbjct: 1 MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH 60 Query: 61 ASNIVPA 67 AS IVP Sbjct: 61 ASVIVPV 67 >ZcspD [K] COG1278 Cold shock proteins EcZ Escherichia coli O157:H7 EDL933 Length = 74 Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 42/67 (62%), Positives = 51/67 (76%) Query: 1 MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60 M GTVKWFN+AKGFGFI P+ GGED+FAH+S IQ +G+++LK Q V F+V GPKG Sbjct: 1 MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH 60 Query: 61 ASNIVPA 67 AS IVP Sbjct: 61 ASVIVPV 67