BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0208.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3707 [NT] COG0835 Chemotaxis signal transduction protein Pae P...   124   8e-29
mll9516 [NT] COG0835 Chemotaxis signal transduction protein Mlo ...   103   1e-22
VCA1093 [NT] COG0835 Chemotaxis signal transduction protein Vch ...    59   4e-09

>PA3707 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas
           aeruginosa
          Length = 171

 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 5   TDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQR 64
           T  LFLLF +  DRYAL   EV  VLPL   K++P AP WVAG+  + G  VPV+DL   
Sbjct: 13  TSKLFLLFRMEGDRYALDAREVVEVLPLLRLKRIPEAPEWVAGVFSHRGVLVPVLDLCAM 72

Query: 65  TLGRPAAQRVSTRLVLVHDRSPAG-EPALLGLILEQATDTLRCAEQQFVRATVAHDETPY 123
             GR A  R STR+VLV  R+    EP  LGLILEQATDTLRC    F    + +    Y
Sbjct: 73  AFGRAALARTSTRIVLVEYRARQDREPVWLGLILEQATDTLRCEPSAFRDYGLDNGGARY 132

Query: 124 LGPVMPYQGGLLQRVQVSALLDAATRAVLY 153
           LGPV     GL+Q V+V ALL    RA+L+
Sbjct: 133 LGPVYEGPRGLVQWVRVEALLPDEVRALLF 162


>mll9516 [NT] COG0835 Chemotaxis signal transduction protein Mlo
           Mesorhizobium loti
          Length = 157

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 83/145 (57%)

Query: 8   LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67
           LFL FS+G DRY + V ++  VLP    K LPGAP  V GL+ Y G  +P+ID++   LG
Sbjct: 4   LFLAFSMGPDRYLIDVHQIEEVLPYIDVKVLPGAPTGVLGLVSYNGIPIPLIDVTLLALG 63

Query: 68  RPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGPV 127
           RP+ + +STR+V+    +  GE  LLGLI E+ TDTL     +F    +     PYLGPV
Sbjct: 64  RPSERLLSTRIVVTRYPAHDGEQRLLGLIAERVTDTLERDPAEFAPFGLEPGTPPYLGPV 123

Query: 128 MPYQGGLLQRVQVSALLDAATRAVL 152
                 ++Q V+V ALL    R  L
Sbjct: 124 ASDGSEIIQWVKVEALLSEEIRTAL 148


>VCA1093 [NT] COG0835 Chemotaxis signal transduction protein Vch Vibrio
           cholerae
          Length = 153

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 9   FLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLGR 68
           FL F L  + Y +P+ EV  V   +P + LP AP +V GLL   G ++P++DL +R    
Sbjct: 6   FLSFVLDDEEYGIPILEVREVRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKRRLGLV 65

Query: 69  PAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRA----TVAHDETPYL 124
           P     +T +V+++    A     LGLI++   +    +EQ+   A    TV  ++  Y+
Sbjct: 66  PVEINATTVVVVIN----AANQQPLGLIVDAVAEVYALSEQEIKHAPSISTVIGNQ--YV 119

Query: 125 GPVMPYQGGLLQRVQVSALLD 145
             +   +   L  + + AL D
Sbjct: 120 KGIAAVKSKHLVLIDIDALFD 140