BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0205.p (775 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3704_1 [NT] COG0643 Chemotaxis protein histidine kinase and re... 604 e-172 mll9511_1 [NT] COG0643 Chemotaxis protein histidine kinase and r... 585 e-166 Cj0284c_1 [NT] COG0643 Chemotaxis protein histidine kinase and r... 246 2e-64 CC0594 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 224 5e-58 BH2970 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 220 1e-56 PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and re... 219 2e-56 TP0363 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 216 1e-55 TM0702 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 216 1e-55 VCA1095 [NT] COG0643 Chemotaxis protein histidine kinase and rel... 210 1e-53 VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 207 6e-53 >PA3704_1 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Pae Pseudomonas aeruginosa Length = 640 Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust. Identities = 331/640 (51%), Positives = 443/640 (69%), Gaps = 7/640 (1%) Query: 3 TPD-LSQMSMLDLFRFEAESQIAQLNASLLALEQQPTAADHLEACMRAGHSLKGAARIVG 61 TPD + S+L+LFR EAE+Q LNA L+ALE+ PT AD LEACMRA HSLKGAARIVG Sbjct: 2 TPDQMRDASLLELFRLEAEAQTQVLNAGLMALERSPTQADQLEACMRAAHSLKGAARIVG 61 Query: 62 LEPAVKVAHVLEDCFVLAQQGRLLLQKKHIDVLLRGADLLARIAAPPDGDEAWADHAGSA 121 L+ V+VAHV+EDC V AQ GRLLLQ +HID LL+G DLL RI PP GD WA+ AG Sbjct: 62 LDAGVRVAHVMEDCLVEAQDGRLLLQSEHIDALLQGCDLLLRIGTPPAGDAGWAEGAGRE 121 Query: 122 EVQAFLVALPSVMSGGDAAPWPAATSAATSAPAPAAAEPVVAAAAQLPEPELAEPAPVPA 181 E+ ++ L ++ G P A AT+ P E V A + PA Sbjct: 122 EIDGLVLRLEGLVRSG--LPLARAELPATT---PGLPEAVPEAPPAASAAASDDNDEEPA 176 Query: 182 APVAGAHLTNASGARAVRVSADSLDRLLGLTGESLVESRQLKPFSASMLRMKRTQREAMQ 241 AG +R +RV+A+ LDRLL ++ +SLVE +++KP + S+ R++R Q A + Sbjct: 177 GQ-AGGEQAEERRSRVLRVTAERLDRLLDISSKSLVEFQRIKPLADSLQRLRRLQSSASR 235 Query: 242 ALDLLQQKLATTQLDEFAQTAFAELRTLMQQNQQLLGEQLSALDAFDRRSVNLSQRLYDE 301 ALD++++ + T LD AQ E R L+ + QQ+L + ++ LD F + +Q LYD Sbjct: 236 ALDVVRETVQETALDPQAQAMLGEARQLIGECQQMLVQHIADLDEFAWQGGQRAQVLYDA 295 Query: 302 ALACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRN 361 ALA RMRPFAD +G ARMVRD+G +LGK VRL + G +TQ+DRD+LEKLEAP+ HLLRN Sbjct: 296 ALASRMRPFADVLSGQARMVRDLGRSLGKQVRLLVEGESTQVDRDVLEKLEAPLTHLLRN 355 Query: 362 AVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGLS 421 AVDHGIE+ R AAGKP +G I + ARH AGML++E++DDG GID++++R V+ R + Sbjct: 356 AVDHGIEAPETRLAAGKPAEGRITIRARHHAGMLVLELSDDGGGIDLQRLRETVLNRQFA 415 Query: 422 NQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQ 481 ET +LSE ELL FL LP FS+R+ VTE+SGRGVGLD V M++Q+RG +R+ + GQ Sbjct: 416 TAETVAQLSEEELLAFLFLPGFSMREQVTEVSGRGVGLDAVQHMVRQLRGGVRMEQRQGQ 475 Query: 482 GSRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQ 541 G+ F +++PLTLSV+RSL+V+I E YAFPLA++ R L AE + LEG QHF + GR Sbjct: 476 GALFHVEVPLTLSVVRSLVVEIGEEAYAFPLAHIERMCELEAEEIVQLEGRQHFWYEGRH 535 Query: 542 VGLVSAHQVLQKGQWRSRDGSVCVVVIGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIA 601 VGLVSA Q+LQ+ + +G++ VVV+ +++ YG+AV+ F+GER LVV PLDPRLGK+ Sbjct: 536 VGLVSAAQLLQRPESSRTEGAIPVVVVRDRDAVYGVAVERFVGERTLVVMPLDPRLGKVR 595 Query: 602 DVLAGALMEDGTPLLILDVADMLRTVEKLTSSGRLQTVDQ 641 DV AGAL++DG+P+LILDV D+L +V KL SSGRL+ +D+ Sbjct: 596 DVSAGALLDDGSPVLILDVEDLLHSVGKLLSSGRLERIDR 635 >mll9511_1 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Mlo Mesorhizobium loti Length = 630 Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust. Identities = 324/647 (50%), Positives = 432/647 (66%), Gaps = 20/647 (3%) Query: 1 MSTPDLSQMSMLDLFRFEAESQIAQLNASLLALEQQPTAADHLEACMRAGHSLKGAARIV 60 M+ D SQ+SML LF+ E E+Q L + LLALE+ P AAD LEACMRA HSLKGAARI+ Sbjct: 1 MTDEDFSQVSMLSLFQAELETQSQALTSGLLALERDPIAADALEACMRAAHSLKGAARII 60 Query: 61 GLEPAVKVAHVLEDCFVLAQQGRLLLQKKHIDVLLRGADLLARIAAPPDGDEAWADHAGS 120 L PAVKVA+ +EDC V AQ+G L ++++HID LL+G+DLL IA+ + + + Sbjct: 61 DLMPAVKVANAMEDCLVAAQRGHLRVRREHIDTLLQGSDLLKLIAS------GSSSESAN 114 Query: 121 AEVQAFLVALPSVMSGGDAAPWPAATSAATSAPAPAAAEPVVAAAAQLPEPELAEPAPVP 180 +EV+ FL + +A P P ++A + P A +P ++A L Sbjct: 115 SEVETFLAKFEELFLP-EAKPRPQDSAADFATPDHAQEQPATTSSATLL----------- 162 Query: 181 AAPVAGAHLTNASGARAVRVSADSLDRLLGLTGESLVESRQLKPFSASMLRMKRTQREAM 240 V AH N R VRV+ADSL+RLLGL GESL+E+R+L+PF+ +LR+KR Q + Sbjct: 163 VGTVPQAH-GNIGSDRMVRVTADSLNRLLGLAGESLIEARRLRPFADGLLRLKRLQSDLA 221 Query: 241 QALDLLQQKLATTQLDEFAQTAFAELRTLMQQNQQLLGEQLSALDAFDRRSVNLSQRLYD 300 A D L L D A AE + ++ +Q L E+L LD+ DR++ +L+ RLYD Sbjct: 222 SAFDNLHAVLPPGSNDAAVVEALAEAQRKLRLSQAFLAERLDELDSVDRKATDLANRLYD 281 Query: 301 EALACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLR 360 E LA RMRPF DG AR VRD+G TLGK VRL+IVG +T IDRDILE+L+AP+GHLLR Sbjct: 282 ETLASRMRPFEDGVRHYARTVRDLGRTLGKRVRLEIVGGSTGIDRDILEQLDAPLGHLLR 341 Query: 361 NAVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGL 420 NAVDHG+E +R A GKPE+G+IRLEARH+AG+L I V DDG GI++ +R VVAR L Sbjct: 342 NAVDHGLEPPEERLAMGKPEEGLIRLEARHNAGLLQIAVVDDGRGIELSTLRETVVARQL 401 Query: 421 SNQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAG 480 + +E+A+ LSE ELL FL LP FS++ +T++SGRGVGLD V M K+VRG ++++ G Sbjct: 402 ATRESADTLSETELLAFLFLPGFSMKAGLTDVSGRGVGLDAVQAMTKEVRGVASVSSEFG 461 Query: 481 QGSRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGR 540 G+RF +QLPLTLSV+R+LLVD+ GEPYAFPLA + +TL+L + L+G HF R Sbjct: 462 HGTRFQLQLPLTLSVLRTLLVDVDGEPYAFPLAAIAKTLKLQRTQINLLQGRPHFRLNDR 521 Query: 541 QVGLVSAHQVLQKGQWRSRDGSVCVVVI-GEQEHTYGLAVDAFLGERMLVVQPLDPRLGK 599 Q+GLV+A +VL +G+ S + VVV+ + YGL VD FLGER LV++PLDPR K Sbjct: 522 QIGLVTAREVLDRGEPGSEPDELSVVVVDAGRGDAYGLIVDRFLGERELVIRPLDPRFAK 581 Query: 600 IADVLAGALMEDGTPLLILDVADMLRTVEKLTSSGRLQTVDQDGAAP 646 I D+ A ALMEDG+P+LI DV D++R+VEKL SS + + + P Sbjct: 582 IKDISAAALMEDGSPVLIFDVDDLIRSVEKLASSSGFRALRRAAGGP 628 >Cj0284c_1 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Cje Campylobacter jejuni Length = 622 Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 180/635 (28%), Positives = 301/635 (47%), Gaps = 43/635 (6%) Query: 11 MLDLFRFEAESQIAQLNASLLALEQQPTAADHLEACMRAGHSLKGAARIVGLEPAVKVAH 70 +L+ F EA + Q++ L+ LE P + L R H++KG++ + + K+ H Sbjct: 7 ILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFRVAHTVKGSSSFLNFDVLTKLTH 66 Query: 71 VLEDCFVLAQQGRLLLQKKHIDVLLRGADLLARI--AAPPDGDEAWADHAGSAEVQAFLV 128 +ED A+ G L + +DV+L D + + + +G+ D A +++ Sbjct: 67 HMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLNSIRDNGN----DTAIGMDIEPICA 122 Query: 129 ALPSVMSGGDAAPWPAATSAATSAPAPAAAEPVVAAAAQLPEPELAEPAPVPAAPVAGAH 188 L ++ G +P A S S P A + P+ E+A P P Sbjct: 123 RLTAISEG--ESPVVATDSNEKSIPQ---------AELEAPKQEIATPEPEVDVNQLSDS 171 Query: 189 LTNASGARAVRV--------------SADSLDRLLGLTGESLVESRQLK-PFSASMLR-M 232 A R ++V + ++ + T ES + K P S S M Sbjct: 172 EVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGEKKVPASGSNASSM 231 Query: 233 KRTQREAMQALDLLQQKLATTQLDEFAQTAFAELRTLMQQNQQLLGEQLSALDAFDRRSV 292 +T R ++ LD L + E L+ ++ GE+ L+ ++ Sbjct: 232 DQTIRVEVKRLDHLMNLIG-----ELVLGKNRLLKIYDDVEERYEGEKF--LEELNQVVS 284 Query: 293 NLSQRLYDEALAC---RMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQIDRDILE 349 LS + D LA RM+P A R+VRD+ LGK + L+I G T++D+ I+E Sbjct: 285 QLSIIITDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGEETELDKSIVE 344 Query: 350 KLEAPIGHLLRNAVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIE 409 ++ PI H++RN+ DHG+E A R A GKPE+G+++L+A + +++E+ DDG G+D Sbjct: 345 EIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVVEITDDGKGLDPN 404 Query: 410 QVRRAVVARGLSNQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQV 469 ++ + + L + A+++++ E + P FS VT +SGRGVG+DVV ++++ Sbjct: 405 GLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGRGVGMDVVKTNIEKL 464 Query: 470 RGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTL 529 G I I ++ G+GS F +++PLTL++I+SLLV E YA PLA V T+R+P + + T+ Sbjct: 465 NGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLASVLETVRVPIDDIYTI 524 Query: 530 EGYQHFSHGGRQVGLVSAHQVLQKGQWRSRDGSVCVVVIGEQEHTYGLAVDAFLGERMLV 589 EG + LV V Q VVVIG E G+ VD +G+ +V Sbjct: 525 EGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVAESKLGIIVDTLVGQEEIV 584 Query: 590 VQPLDPRLGKIADVLAGALMEDGTPLLILDVADML 624 ++ + L I + + DG LI+DV M+ Sbjct: 585 IKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMM 619 >CC0594 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Ccr Caulobacter vibrioides Length = 764 Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 173/637 (27%), Positives = 290/637 (45%), Gaps = 90/637 (14%) Query: 15 FRFEAESQIAQLNASLLALEQQPTAADHLEACMRAGHSLKGAARIVGLEPAVKVAHVLED 74 F EA + ++ L+ E +P L+ R H+LKGA +GL +AH E Sbjct: 8 FLVEAHEGLEVIDVELVRFEARPEDRAALDKIFRLVHTLKGACGFLGLGRLEAIAHAGET 67 Query: 75 CFVLAQQGRLLLQKKHIDVLLRGADLLARI-------AAPPDGD--------EAWADHAG 119 + GRL + + + +L D + I P+GD EA++D A Sbjct: 68 LLGRFRDGRLEVSSQAVTAVLSAIDRIKMILDGLGDLGREPEGDDTALIQALEAFSDGAA 127 Query: 120 SAEVQAFLVALPSVMSGGDAAP-----------------WPAATSAATSAPAPAAAEPVV 162 +E Q+ + A P ++ AAP + AA APAP P Sbjct: 128 PSE-QSPVAAEPEPLAADVAAPERTLRPGEVSLEELEAAFLAAEGPVFDAPAPPVETPSA 186 Query: 163 AAAAQLPEPELAEPAPVPAAPVAGAHLTNASGARAVRVSADSLDRLLGLTGESLVESRQL 222 A+ A EP+ + AP A ++ + G + +RV D L+ ++ L E Sbjct: 187 ASPAATFEPDQTDSAP-------EALVSESLGPQTIRVGVDVLEDMMTLVSE-------- 231 Query: 223 KPFSASMLRMKRTQREAMQALDLLQQKLATTQLDEFAQTAFAELRTLMQQNQQLLGEQLS 282 L + R Q L+Q N+ G Sbjct: 232 -------LVLTRNQ--------------------------------LLQLNR---GRGDE 249 Query: 283 ALDAFDRRSVNLSQRLYDEALACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQ 342 +R +++ L D + RM+P L R+VRD+ LGK + L + G T+ Sbjct: 250 TFTPPLQRLSSITGELQDSVMKTRMQPIGQAWKKLPRLVRDLSGELGKPIELVMEGEATE 309 Query: 343 IDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADD 402 +DR +LE++ P+ H++RN+ DHG+E RRAAGKPE G+I L A H G ++I + DD Sbjct: 310 LDRQVLEQIRDPLTHMVRNSADHGLEGPEARRAAGKPEAGLIHLSAYHEGGAIVIRLRDD 369 Query: 403 GAGIDIEQVRRAVVARGLSNQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVV 462 G G+D ++R + +G+ + AE ++EA++ + P FS VT +SGRGVG+DVV Sbjct: 370 GRGLDTARIREKAIEKGIVGRAEAETMTEAQVHRLIFAPGFSTAAVVTNVSGRGVGMDVV 429 Query: 463 ADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLP 522 ++Q+ G I + + GQG +++PLTL+++ +L++ +GE +A P A V +++ Sbjct: 430 RSNIEQIGGQIELQSTLGQGCVVTVKIPLTLAIVSALIIRAAGERFAVPQASVQELVKVS 489 Query: 523 AEALQTLEGYQHFSHGGRQVGLVSAHQVLQKGQWRSRDGSVCVVVIGEQEHTYGLAVDAF 582 A++ E +H + L+ + ++ R + V+++ H +G+ V+ Sbjct: 490 ADSDHRFEEIEHVRMLRLREQLIPLIDLSEELGRERRHEAKFVLIMRVGAHRFGVLVEEV 549 Query: 583 LGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILD 619 + +VV+PL L I L+ DG+ +LI+D Sbjct: 550 IDTEEIVVKPLASVLRTIPVFSGATLLGDGSVVLIID 586 >BH2970 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Bha Bacillus halodurans Length = 682 Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/404 (32%), Positives = 217/404 (53%), Gaps = 16/404 (3%) Query: 224 PFSASMLRMKRTQREAMQALDLLQQKLATTQLDE--FAQTAFAELRTLMQQNQQLLGEQL 281 P + + +T R ++ LD+L +D Q A +EL NQ L E + Sbjct: 293 PSDKKGVEVNKTVRVNIERLDVLMNLFEELVIDRGRLEQIA-SEL------NQNELNETV 345 Query: 282 SALDAFDRRSVNLSQRLYDEALACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTT 341 R +S L + L RM P RMVR + L K V L+IVG T Sbjct: 346 -------ERMSRISGDLQEIILNMRMMPVEQVFNRFPRMVRSLSKELNKKVNLEIVGAET 398 Query: 342 QIDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVAD 401 ++DR I++++ P+ HL+RN++DHGIE+ RRAAGKPE+G + L A HS + IE+ D Sbjct: 399 ELDRTIIDEIGDPLVHLIRNSIDHGIETPEVRRAAGKPEEGTVILRAFHSGNNVFIEIED 458 Query: 402 DGAGIDIEQVRRAVVARGLSNQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDV 461 DGAGID ++V + + G+ +E A +++++++ + L P FS + +T+ISGRGVGLDV Sbjct: 459 DGAGIDRDKVLQKALTNGVVTEEDAAKMNDSQVFQLLFAPGFSTAEKITDISGRGVGLDV 518 Query: 462 VADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRL 521 V + + G + +T++ G+GS F +QLPLTLS+I +LV+++ E YA PL+ + T + Sbjct: 519 VQSTFESIGGVVSVTSKLGKGSLFSIQLPLTLSIIDVMLVEVADEKYAIPLSSIVETAIV 578 Query: 522 PAEALQTLEGYQHFSHGGRQVGLVSAHQVLQKGQWRSRDGSVCVVVIGEQEHTYGLAVDA 581 + + + G+ V LV + + R D +V++ + E GL VD+ Sbjct: 579 NKNEVYSAHNQKVIDFRGKVVPLVFLSDIFAVPEKREADELYSLVIVHKGEKVAGLVVDS 638 Query: 582 FLGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILDVADMLR 625 +G+ +V++ L L + + ++ +G LI+D +++ Sbjct: 639 LIGQHDIVLKSLGDYLTDVFAISGATILGNGQVALIVDTNALIK 682 >PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Pae Pseudomonas aeruginosa Length = 1468 Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/337 (39%), Positives = 198/337 (58%), Gaps = 17/337 (5%) Query: 303 LACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTT-QIDRDILEKLEAPIGHLLRN 361 + RM PF L R+VR V LGK V +VGN ++DR +LE++ AP+ H+LRN Sbjct: 1118 MRTRMVPFDRLVPRLRRIVRQVAGELGKQVEF-VVGNADGEMDRTVLERIVAPLEHMLRN 1176 Query: 362 AVDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGLS 421 AVDHGIES RRAAGKPE G IRL G +L+ ++DDGAGI ++ VRR + RGL Sbjct: 1177 AVDHGIESGETRRAAGKPEHGTIRLNIGREGGDILLTLSDDGAGIRLDAVRRKAIERGLM 1236 Query: 422 NQETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQ 481 + ++ LS+ E+L+F+L FS + VT+ISGRGVGLDV +KQ+ G++ I T+ GQ Sbjct: 1237 SADS--DLSDHEVLQFVLESGFSTAEKVTQISGRGVGLDVANSEVKQLGGSVSIQTEPGQ 1294 Query: 482 GSRFLMQLPLTLSVIRSLLVDISGEP-YAFPLAYVNRTLRLPAEALQTLEGYQ------- 533 G+RF ++LP T+SV R+L+V +SGE YA PL + +R+ L+ L + Sbjct: 1295 GTRFNVRLPFTVSVNRALMV-LSGEDLYAVPLNTIEGIVRVSPYELEALYDQRGEAGLDT 1353 Query: 534 -HFSHGGRQVGLVSAHQVLQKGQWRSRDGS---VCVVVIGEQEHTYGLAVDAFLGERMLV 589 F + G+ L ++L GQ G + V+++ EH + VD+ G R +V Sbjct: 1354 PSFEYAGQSYELKYLGELLNNGQEPKLVGQSLPLPVILVRSSEHAVAVQVDSLAGSREIV 1413 Query: 590 VQPLDPRLGKIADVLAGALMEDGTPLLILDVADMLRT 626 V+ L P+ +A + L+ DG ++ILD+ +R+ Sbjct: 1414 VKSLGPQFAGVAGISGATLLGDGRVVVILDLLATIRS 1450 >TP0363 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Tpa Treponema pallidum Length = 812 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 145/502 (28%), Positives = 254/502 (50%), Gaps = 33/502 (6%) Query: 148 AATSAPAPAAAEPVVAAAAQLPE--PELAEPAPVPAAPVAGAHLTNASGARAV-RVSADS 204 A T + + V + ++P P+ VP+A + ++ G+ +V RV A Sbjct: 300 AGTGGVSEGSGAAVRSGGERVPNSLPKQVAGCAVPSAKDSSKATSSGYGSGSVLRVDAKR 359 Query: 205 LDRLLGLTGESLVESRQLKP-----------FSASMLRMKRTQREAMQALDLLQQKLATT 253 +D LL L E+++ L F + K R+ + +K+ Sbjct: 360 IDYLLNLVSETVIIKASLNQSALEFGEVYTLFQNANGAYKERLRKFFDRVPAYLEKVKNG 419 Query: 254 Q-LDEFAQTAFAE---LRTLMQQNQQLLGEQLSALDAFDRRSVNLSQRLYDEALACRMRP 309 Q D + AE + + + L + ++ + + +S L + + RM P Sbjct: 420 QDADAVRKGMIAEAVGVFDIFSSFENGLKQSVTKFRSSAQNLGRISGELQEGVMKIRMVP 479 Query: 310 FADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNAVDHGIES 369 + + R+VRD+ L K VRL I G T++D+ ++E L PI H +RN++DHGIE+ Sbjct: 480 ISQIFSRYPRVVRDLSRDLRKEVRLVIEGEETELDKSVVEDLLDPIMHCVRNSLDHGIEA 539 Query: 370 SAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGLSNQETAERL 429 R +GKP QG + L A + M++IEVADDG GID+E V+ V RG+ + + L Sbjct: 540 PEVRARSGKPAQGTLLLRASNEGNMIVIEVADDGRGIDVEAVKTKAVERGVLH--PGKNL 597 Query: 430 SEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQL 489 +E E + + P FS +V+ +SGRGVGLDVV ++++ GT+ + ++ +G+RF+++L Sbjct: 598 TEVEAFQLIFAPGFSTSRSVSNVSGRGVGLDVVKTHIERLNGTVSVFSEVQKGTRFVIKL 657 Query: 490 PLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQ 549 PLTL++I+ LL+ + E Y+ P+A V + R+ +E + ++ Y+ F+ + L+ + Sbjct: 658 PLTLAIIQGLLIRVGQEVYSIPIASVIESHRIKSEEINRIDNYEVFNVRNEVISLLRLDR 717 Query: 550 VLQ-------KGQWRSRDGSVCVVVIGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIAD 602 + GQ+ VV++G E GL VDA +GE +V++PL + Sbjct: 718 LFGISCDDEVTGQYH------YVVIVGAAEKKVGLMVDALIGEEDVVIKPLRDQFTSSPG 771 Query: 603 VLAGALMEDGTPLLILDVADML 624 + +++ DG+ LI+DV +L Sbjct: 772 IAGASILGDGSVSLIIDVGQLL 793 >TM0702 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Tma Thermotoga maritima Length = 671 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 205/357 (57%), Gaps = 10/357 (2%) Query: 266 LRTLMQQNQQLLGEQLSALDAFDRRSVNLSQRLYDEALACRMRPFADGTAGLARMVRDVG 325 L TL + N + L E LS L ++ L + + RM P + RMVRD+ Sbjct: 321 LETLKKYNIKELDESLSHLS-------RITLDLQNVVMKIRMVPISFVFNRFPRMVRDLA 373 Query: 326 NTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAAGKPEQGVIR 385 + K V + G T++DR +E++ P+ HLLRNA+DHGIE +R A GKP G + Sbjct: 374 KKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 433 Query: 386 LEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGLSNQETAERLSEAELLEFLLLPSFSL 445 L ARH ++IEV DDG GID E++ R + +GL ++ A LS+ E+L FL +P FS Sbjct: 434 LSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFST 493 Query: 446 RDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDISG 505 ++ V+E+SGRGVG+DVV ++++ + G+I I ++ +G++ ++LPLTL++I++LLV ++ Sbjct: 494 KEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNN 553 Query: 506 EPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQVLQKGQWRSRDGSVCV 565 YA P+A ++ L + E +Q ++ G + + +VLQ + V Sbjct: 554 LVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAV 613 Query: 566 VV-IGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILDVA 621 +V +G ++ YG+ VD LG+ +V++ L ++ + A++ DG+ LI++V+ Sbjct: 614 IVRVGNRK--YGIVVDDLLGQDDIVIKSLGKVFSEVKEFSGAAILGDGSIALIINVS 668 >VCA1095 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Vch Vibrio cholerae Length = 720 Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/505 (30%), Positives = 243/505 (48%), Gaps = 73/505 (14%) Query: 144 AATSAATSAPAPAAAEPVVAAAAQLP--EPELAEPAPVPAAPVAGAHLTNA-----SGAR 196 AA +A + EPV A LP EP +A APV A P A TN S Sbjct: 266 AAPAATLQSNPQTQVEPV--AIVDLPAVEPPVATVAPVIANPKESA--TNKPAKTDSSVS 321 Query: 197 AVRVSADSLDRLLGLTGESLVESRQLKPFSASMLRMKRTQREAMQALDLLQQKLATTQLD 256 ++RV + +D L+ L GE ++ L +M LD L+ LA Sbjct: 322 SIRVDIEKVDNLINLVGELVITQSMLTELGNDF---------SMDKLDKLKAGLA----- 367 Query: 257 EFAQTAFAELRTLMQQNQQLLGEQLSALDAFDRRSVNLSQRLYDEALACRMRPFADGTAG 316 QLL S+ L + L RM P + + Sbjct: 368 ------------------QLLQN---------------SKDLQENVLNIRMLPMSFAFSR 394 Query: 317 LARMVRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAA 376 R+VRD+ LGK V L I G T++D+ +LE++ P+ HL+RN +DHG+E R A Sbjct: 395 FPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAK 454 Query: 377 GKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARG-LSNQETAERLSEAELL 435 GKPE GVI L+A H G +++E++DDGAGID +++ R V +G L Q L++ +++ Sbjct: 455 GKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQII 514 Query: 436 EFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSV 495 + P FS + V++ISGRGVG+DVV ++++ G I + ++ G+GSRF + LPLTL++ Sbjct: 515 NLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAI 574 Query: 496 IRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQV----L 551 + LV ++ + Y PL + E++Q + GG ++ + + L Sbjct: 575 LDGQLVKVADQVYVIPLLTI-------VESIQINTASVKHAAGGIELYRLREENIPILRL 627 Query: 552 QKGQWRSRDGSV---CVVVIGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIADVLAGAL 608 Q R GS+ + + H GL VD L ++ +V++ L+ K+A + + Sbjct: 628 QDELAMGRSGSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATI 687 Query: 609 MEDGTPLLILDVADMLRTVEKLTSS 633 + DG+ LILD+ ++ K +SS Sbjct: 688 LGDGSVSLILDIPGLIAHFMKRSSS 712 >VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Vch Vibrio cholerae Length = 785 Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 182/327 (55%), Gaps = 6/327 (1%) Query: 303 LACRMRPFADGTAGLARMVRDVGNTLGKSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNA 362 + RM+P R+VRD+ +L K + L++ G T +D++++E L P+ HL+RN+ Sbjct: 453 MKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNS 512 Query: 363 VDHGIESSAQRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDIEQVRRAVVARGLSN 422 VDHGIE +R GK G + L A + + + DDGAG+D +++R V RG+ + Sbjct: 513 VDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMD 572 Query: 423 QETAERLSEAELLEFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRITTQAGQG 482 ++ A RL+ E + +P FS ++ +T+ISGRGVG+DVV + + G+I I + G+G Sbjct: 573 EDAANRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKG 632 Query: 483 SRFLMQLPLTLSVIRSLLVDISGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQV 542 ++ +++PLTL+++ +L+V ++G P+A PLA VN L ++G + + Sbjct: 633 TKITIKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSI 692 Query: 543 GLVSAHQVL--QKG--QWRSRDGSVCVVVIGEQEHTYGLAVDAFLGERMLVVQPLDPRLG 598 L L +KG Q R G V +V IG Q GL VD +G+ +V++PLD L Sbjct: 693 PLFYLQNWLAPKKGKVQLRQGHGHVVIVQIGSQR--VGLVVDTLIGQEEVVIKPLDKLLQ 750 Query: 599 KIADVLAGALMEDGTPLLILDVADMLR 625 + + DG LILDV D+L+ Sbjct: 751 GTPGMSGATITSDGHIALILDVPDLLK 777