BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0203.p (341 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 390 e-108 mll9509 [T] COG3706 Response regulator containing a CheY-like re... 374 e-103 all2874 [T] COG3706 Response regulator containing a CheY-like re... 217 4e-56 alr3599 [T] COG3706 Response regulator containing a CheY-like re... 196 6e-50 slr1760 [T] COG3706 Response regulator containing a CheY-like re... 196 6e-50 sll1673_3 [T] COG2199 FOG Syn Synechocystis 179 9e-45 sll0779_2 [T] COG2199 FOG Syn Synechocystis 166 1e-40 slr0829_3 [T] COG2199 FOG Syn Synechocystis 163 7e-40 RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum 161 2e-39 slr0687_3 [T] COG2199 FOG Syn Synechocystis 160 3e-39 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Pae Pseudomonas aeruginosa Length = 347 Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/316 (61%), Positives = 241/316 (76%), Gaps = 1/316 (0%) Query: 22 IMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDLVMPGVDG 81 +MVLLVDDQ M+GEA+RR+LA+E IDFHFC+ ++A+ VA + +PTVILQDLVMPGVDG Sbjct: 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDG 78 Query: 82 MTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVKLPDVIELVARIRYHSR 141 +TL+ YR + ++PIIVLS++++ VK AFA GANDY+VKLPD IELVARIRYHSR Sbjct: 79 LTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 Query: 142 SYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARR 201 SYI L QRD AY ALRESQQQL ++N LQRL N+DGLTG++NRR+FD+YL EWRR+ R Sbjct: 139 SYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLR 198 Query: 202 DGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMI 261 + L+LL+IDVD+FK YND +GHVAGD LRQVA A+ R +DL+AR+GGEEFAM+ Sbjct: 199 EQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMV 258 Query: 262 LPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTVSVGAATLVP-QEQQELRELIEA 320 LP T GA +A+KV VESLQ+ H+ + LTVS+G +TLVP Q R LIE Sbjct: 259 LPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEM 318 Query: 321 ADRRLYLAKQQGRNRV 336 AD+ LY AK GRN+V Sbjct: 319 ADQALYQAKNNGRNQV 334 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Mlo Mesorhizobium loti Length = 354 Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/334 (57%), Positives = 237/334 (70%), Gaps = 5/334 (1%) Query: 6 TDIPLVSPALPADEYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERT 65 T P + P L AD Y MVLL+DDQ MV EA+RRALANEP I HFCT A+TVA+ Sbjct: 22 TQEPELVPPL-ADNYSSMVLLIDDQIMVCEAVRRALANEPDISLHFCTDPLRAMTVADEV 80 Query: 66 RPTVILQDLVMPGVDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVK 125 +PTVILQDLVMPGVDG+ LVR+YR A VP+IVLSS++D K AFA GANDY+VK Sbjct: 81 KPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSKEDPATKGVAFAAGANDYLVK 140 Query: 126 LPDVIELVARIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANR 185 LPD IEL+ARIRYH+R+Y++ +QRDAAY ALRESQ+QL +N EL+RLT DGLTG+ NR Sbjct: 141 LPDRIELIARIRYHTRAYLDHVQRDAAYRALRESQRQLISANLELERLTRIDGLTGLGNR 200 Query: 186 RYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEALDSSIQR 245 RYFD+YL AEW+RA R L+LL+ID D FK YND YGH+AGD VL+Q+A + S R Sbjct: 201 RYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGHMAGDEVLKQIARVIHSGSGR 260 Query: 246 PADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTVSVGAAT 305 DL+AR+GGEEF ++L T L+ + AIA+++ V L +PH V T+SVG AT Sbjct: 261 STDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELNIPHGPDRV----TISVGVAT 316 Query: 306 LVPQEQQELRELIEAADRRLYLAKQQGRNRVVWQ 339 VP E + + + AAD L+ AK +GRNRV Sbjct: 317 TVPNENETPNDFVNAADLALFRAKSEGRNRVALH 350 >all2874 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Nos Nostoc sp. PCC 7120 Length = 330 Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/316 (38%), Positives = 181/316 (57%), Gaps = 15/316 (4%) Query: 19 EYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDLVMPG 78 E + ++L+VDD+P + +R +L E + +AL + + +P ++L D +MP Sbjct: 7 ESQCLILIVDDEPFIRAQLRLSLQCEGYRTAE-AEDGRQALAIFQELQPDIVLLDAIMPD 65 Query: 79 VDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVKLPDVIELVARIRY 138 +DG + + P+++++ +D AF GA DY+ K L R++ Sbjct: 66 LDGFECCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVK- 124 Query: 139 HSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRR 198 L+Q+ QQ+L+ +N ELQRL D LT +ANRR F++Y EW+R Sbjct: 125 ------RLIQQ-------FHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQR 171 Query: 199 ARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEF 258 RD L L+L+L DVDFFK YND YGH AGD L+ VA+A++S + RPAD+ AR+GGEEF Sbjct: 172 MARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEF 231 Query: 259 AMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELI 318 A+ILPRT DGA +A +C V LQ+ H S + +T+S G AT +P + +E+I Sbjct: 232 AVILPRTYPDGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEII 291 Query: 319 EAADRRLYLAKQQGRN 334 AADR LY AK GR+ Sbjct: 292 NAADRALYQAKMTGRD 307 >alr3599 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Nos Nostoc sp. PCC 7120 Length = 344 Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 178/343 (51%), Gaps = 40/343 (11%) Query: 23 MVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDLVMPGVDGM 82 ++L+ DD + +R A+ E + T ++ L E +P ++L D +MP +DG Sbjct: 15 VILVADDDKTIRMLLREAMEKEGYRVVEV-TDGKQCLDAYEAVKPDIVLLDAMMPVMDGF 73 Query: 83 TLVRQYRASA------VLVNV------------------PIIVLSSRDDAVVKRDAFAGG 118 T +Q A L N+ PI++++S +DA AF G Sbjct: 74 TCCKQLLQIARNNLITALANLDTDSGLGNTVISRLWERTPILMITSLNDAESVDRAFEAG 133 Query: 119 ANDYMVKLPDVIELVARIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDG 178 A DY+ K + L QR + +QL+ +N LQ L N DG Sbjct: 134 ATDYITK--------------PIHWAVLRQRLRRLLQQAQVYKQLEAANMALQHLANVDG 179 Query: 179 LTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEA 238 LTG+ANRR FD+YL +W ++G L+L+L D+D+FK YND YGH GD L++V Sbjct: 180 LTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKFYNDQYGHPTGDICLQKVGAV 239 Query: 239 LDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLT 298 L Q+ DL AR+GGEEFA+++P T GA +A + V LQ+ H+ S+VS +T Sbjct: 240 LSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQTSVRDLQIAHDKSAVSQHIT 299 Query: 299 VSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNRVV-WQD 340 +S+G AT+ P + +LI AAD+ LY AK+ GRNR+ W+D Sbjct: 300 LSMGVATITPTWESSPSDLIAAADKALYKAKESGRNRICQWED 342 >slr1760 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Syn Synechocystis Length = 315 Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 23/326 (7%) Query: 16 PADEYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDLV 75 P + +L+VDD + +R L E H T EEALT +P V+L D V Sbjct: 6 PIETAAAKILVVDDDGFMRMQLRVYLQKEGH-RVELATNGEEALTKFAEIKPEVVLLDAV 64 Query: 76 MPGVDGMT----LVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVKLPDVIE 131 MP +DG L++ Y+ + LV +++ D+A V R AF GA DY+ K + Sbjct: 65 MPVMDGFACCQALMKIYQNPSPLV---LMITGLDDEASVDR-AFEAGAIDYVTK--PIHW 118 Query: 132 LVARIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDY 191 V R R Y N LQ QL+ N L+RL D LT +ANRR + + Sbjct: 119 AVLRQRVKRLLYQNRLQ------------HQLESVNQMLERLAKVDQLTQLANRRQLELF 166 Query: 192 LGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEALDSSIQRPADLSA 251 L EW A R+ ++LL D+D+FK YND+YGH GD L+QVA+AL + RP DL+A Sbjct: 167 LDTEWSEAIREQYPFSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAA 226 Query: 252 RFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTVSVGAATLVPQEQ 311 R+GGEEF ++LP T L GA I + + + L +PH S+++ +T+S+G A+ +P+ Sbjct: 227 RYGGEEFLIVLPNTDLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLG 286 Query: 312 QELRELIEAADRRLYLAKQQGRNRVV 337 + +L+ AAD+ LY AK QGRNR+V Sbjct: 287 SDWGKLVGAADQYLYEAKAQGRNRLV 312 >sll1673_3 [T] COG2199 FOG Syn Synechocystis Length = 176 Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 119/175 (68%) Query: 163 LQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDN 222 LQ +N +LQ L N DGLT IANRR FD+YL EW+R R+ L+L+L+D+D+FK YND Sbjct: 1 LQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDL 60 Query: 223 YGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVE 282 YGH GD L++VA L +R DL AR+GGEEF ++LP T A A+A+ + + Sbjct: 61 YGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIA 120 Query: 283 SLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNRVV 337 +L +PHEGSSVS ++T+S+G ++++P + + +I AD+ LY AK QGRNR + Sbjct: 121 ALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAI 175 >sll0779_2 [T] COG2199 FOG Syn Synechocystis Length = 184 Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 112/166 (67%) Query: 169 ELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAG 228 EL+RLT DGLTG+ NRR+FD L EW+ A R+ L L+++D+D+FKLYND GH AG Sbjct: 1 ELERLTQIDGLTGVYNRRFFDQALEREWQIAFRETESLTLVMLDIDYFKLYNDTLGHQAG 60 Query: 229 DAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPH 288 D LR VA L S+ R +DL AR+GGEEFA+ILPRT L GA +AQ++ L+++ + H Sbjct: 61 DHCLRIVAAILQESVHRTSDLVARYGGEEFALILPRTDLSGAVIVAQRIKTLMDAKAISH 120 Query: 289 EGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRN 334 S ++ ++TVS+G VP+ L ++ AD LY AK++GRN Sbjct: 121 PTSEIANYVTVSIGIHCAVPRPGLSLASWVKCADDALYQAKKRGRN 166 >slr0829_3 [T] COG2199 FOG Syn Synechocystis Length = 188 Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 1/179 (0%) Query: 163 LQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDN 222 L++ N +L +L + DGLT IANRR F+ + EWRR R + ++L++ D+D FK YND Sbjct: 1 LERFNKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDR 60 Query: 223 YGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVE 282 YGH GD L +VA+A + RPADL ARFGGEEFA++LP T GA +A+K+ + Sbjct: 61 YGHPEGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAIS 120 Query: 283 SLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNR-VVWQD 340 L + HE S +S +T+S+G T P ++ R LI+ AD LY AK++GRN+ VVW + Sbjct: 121 QLAIAHEASPISGQITISLGIGTQFPSKELISRTLIKQADMALYEAKRRGRNQYVVWTE 179 >RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 177 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/167 (49%), Positives = 112/167 (67%), Gaps = 3/167 (1%) Query: 173 LTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVL 232 L TD LTG+ANRR D+ L AEWRRA R+ L++L+IDVD FK YND+YGH GDA L Sbjct: 11 LAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYGHPDGDAAL 70 Query: 233 RQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSS 292 + VA + ++++RP DL+AR+GGEEF ++LP + LD A+ +A+ + + L +PH S Sbjct: 71 QAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVLNIPH-ARS 129 Query: 293 VSAWLTVSVGAATLVPQEQQELR--ELIEAADRRLYLAKQQGRNRVV 337 S LTVS+GAA+ P E R L +AAD +LY AK GRNR + Sbjct: 130 ASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 176 >slr0687_3 [T] COG2199 FOG Syn Synechocystis Length = 176 Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 110/166 (66%) Query: 169 ELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAG 228 ++ L N DGLTGIANRRY D +L +W++ + L+L+L D+DFFK YND YGH+ G Sbjct: 4 QVHYLANMDGLTGIANRRYLDHFLEQQWQKLAKHHQYLSLILCDIDFFKQYNDTYGHLEG 63 Query: 229 DAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPH 288 D L++VA L ++R DL+AR+GGEEFA++LP+T G + + + + Q+PH Sbjct: 64 DECLKKVANLLKKVMRRGTDLTARYGGEEFALVLPQTNKQGCQNVVIHLQSVFKQAQIPH 123 Query: 289 EGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRN 334 S + +LT+S+G+AT+VP ++LI+ AD+ L+ AK+ GRN Sbjct: 124 RSSIIQPYLTLSIGSATMVPLPNVPPKQLIDWADQALFKAKKAGRN 169