BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0187.p         (260 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2193 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti        226   4e-59
PA0278 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa     224   2e-58
AGc4214 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa...   196   4e-50
BMEI0154 [R] COG0730 Predicted permeases Bme Brucella melitensis       59   1e-08

>mll2193 [R] COG0730 Predicted permeases Mlo Mesorhizobium loti
          Length = 249

 Score =  226 bits (576), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 20  AVFLLAGFVKGVIGLGLPTVAVGLLSLMMPPVQAAALLIVPSMVTNGWQLLTGGALRALV 79
           AVFL AGFVKGV G+GLPTVA+GLL++ MPP +AAALL++PS+VTN WQL TG A   L 
Sbjct: 12  AVFLAAGFVKGVAGMGLPTVAMGLLAVTMPPAEAAALLLIPSLVTNLWQLFTGPAFAGLC 71

Query: 80  RRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYALAGLASWTPSVSPAQEQWW 139
           RRLWT++AGI+LG +AG   +       A + LG ALVLYA+ GL   + +     E   
Sbjct: 72  RRLWTMMAGIMLGAVAGAGVLTGAHAGAASVGLGAALVLYAIFGLFKLSFTTPARHEALM 131

Query: 140 SPAVGLTTGLVTAATGVFVIPAVPYLQALGLPREQLIQALGLSFTVSTLALAVNLGQGGA 199
           SP VG+ TGLVT ATGVFVIPAVPYLQ+L L +E LIQALGLSFTVST ALA+ L + GA
Sbjct: 132 SPLVGVATGLVTGATGVFVIPAVPYLQSLRLEKEDLIQALGLSFTVSTAALAIGLFRTGA 191

Query: 200 FSGGVGW--ASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFIGLLLLGLHLASALLR 255
            +        S++ LLPAL GM IG  +R  +   TFRR FF GLL LG++LA   LR
Sbjct: 192 LASPTAQLTGSILALLPALAGMFIGQALRQAMSVETFRRVFFAGLLALGVYLALEALR 249


>PA0278 [R] COG0730 Predicted permeases Pae Pseudomonas aeruginosa
          Length = 250

 Score =  224 bits (570), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 167/235 (71%), Gaps = 2/235 (0%)

Query: 7   SIDMSATVLAASLAVFLLAGFVKGVIGLGLPTVAVGLLSLMMPPVQAAALLIVPSMVTNG 66
           S+D+ A +   +L  FLLAGFVKGV+GLGLPTV+VGLL L MPP+QAAALLIVPSMVTN 
Sbjct: 2   SVDLHALIPLIAL-TFLLAGFVKGVVGLGLPTVSVGLLGLAMPPMQAAALLIVPSMVTNL 60

Query: 67  WQLLTGGALRALVRRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYALAGLAS 126
           WQL  G     L++RL  LL G+V+GTL  G+++  D  R+A  VLGLALV YAL GLA+
Sbjct: 61  WQLACGPRFLGLMKRLAGLLLGVVVGTLLVGAWLGGDAPRQATGVLGLALVAYALLGLAA 120

Query: 127 WTPSVSPAQEQWWSPAVGLTTGLVTAATGVFVIPAVPYLQALGLPREQLIQALGLSFTVS 186
               +    E W  P VGL TG +TA TGVFVIPAVPYL ALGL R++L+QALGLSF+ S
Sbjct: 121 IPLHLPARHEPWAGPLVGLATGALTAVTGVFVIPAVPYLGALGLQRDELVQALGLSFSAS 180

Query: 187 TLALAVNLG-QGGAFSGGVGWASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFI 240
           TLALAV LG  G      +  ASL+ L+PAL GM +G  +R R+ A  FRRCFF+
Sbjct: 181 TLALAVTLGVHGDLLEPQMLGASLLTLVPALGGMLLGQWLRQRISATLFRRCFFV 235


>AGc4214 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 276

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 154/240 (64%)

Query: 10  MSATVLAASLAVFLLAGFVKGVIGLGLPTVAVGLLSLMMPPVQAAALLIVPSMVTNGWQL 69
           +  T L   LA F++AG VKGV G+GLPTVA+G+L L MPPV AA LLI+PS +TN WQL
Sbjct: 30  LDTTTLLMVLATFIVAGIVKGVTGMGLPTVAMGVLGLFMPPVAAAGLLILPSFITNIWQL 89

Query: 70  LTGGALRALVRRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYALAGLASWTP 129
           L G   RA+V+RLW ++  I++GTL G   M A  G      LGL L  YA   L +   
Sbjct: 90  LAGPDFRAIVKRLWPMMIAIIVGTLIGIRLMTAGTGIWTTSALGLCLAAYAAYSLLARPV 149

Query: 130 SVSPAQEQWWSPAVGLTTGLVTAATGVFVIPAVPYLQALGLPREQLIQALGLSFTVSTLA 189
           S+    E   SP +GL TGL+T  TG+FV+PAVPY+Q+LG  R+ L+QALGLSFTVST+A
Sbjct: 150 SIPARLESKLSPVMGLVTGLLTGGTGIFVVPAVPYIQSLGFNRDDLVQALGLSFTVSTVA 209

Query: 190 LAVNLGQGGAFSGGVGWASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFIGLLLLGLHL 249
           LA  L    AF       S + +LPAL GM +G ++R  V   TFRR F I LL+LG+ L
Sbjct: 210 LAAGLASQNAFHVEHLSLSALAVLPALAGMWLGQKIRYVVSPATFRRWFLICLLVLGVEL 269


>BMEI0154 [R] COG0730 Predicted permeases Bme Brucella melitensis
          Length = 78

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 42/65 (64%)

Query: 8  IDMSATVLAASLAVFLLAGFVKGVIGLGLPTVAVGLLSLMMPPVQAAALLIVPSMVTNGW 67
          IDM ++ +      F  AG VKGV G+GLPTVA+G+L   + P+ AA+LLIV S  TN W
Sbjct: 2  IDMPSSTIVLIFVTFCAAGVVKGVTGMGLPTVAMGVLGAFISPLAAASLLIVLSFATNLW 61

Query: 68 QLLTG 72
          QL  G
Sbjct: 62 QLWRG 66