BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0162.p (112 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1996 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 123 8e-29 NMB0948 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 96 2e-20 NMA1143 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 96 2e-20 PA1581 [C] COG2009 Succinate dehydrogenase/fumarate reductase, c... 82 4e-16 mll4266 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 68 5e-12 BMEI0159 [C] COG2009 Succinate dehydrogenase/fumarate reductase,... 62 4e-10 YPO1109 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 61 5e-10 sdhC [C] COG2009 Succinate dehydrogenase/fumarate reductase, cyt... 61 6e-10 ZsdhC [C] COG2009 Succinate dehydrogenase/fumarate reductase, cy... 61 6e-10 ECs0746 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ... 61 6e-10 >RSc1996 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Rso Ralstonia solanacearum Length = 140 Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 61/112 (54%), Positives = 81/112 (72%) Query: 1 MPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSW 60 +P A VSI+HR SG +FL+LPF+LYL + SL SE +F S F K+V+LAL W Sbjct: 29 LPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFTALLSNGFAKVVVLALIW 88 Query: 61 AYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLVALKLFGAF 112 AYLHHFCAGIR+LI+D HIG+DK ++ KS+ +VL++S+ L V+ KLFG F Sbjct: 89 AYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSLLLTVVFGAKLFGLF 140 >NMB0948 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Nme Neisseria meningitidis MC58 Length = 125 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 69/105 (65%) Query: 1 MPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSW 60 +P+ IVSI+HRISG+ LF+MLPF+LY L +L E F+ + S VKLV++ + W Sbjct: 17 LPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLW 76 Query: 61 AYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLVA 105 AYLHH AGIR L +D H GL+ ++AR ++ V ++ L V++ Sbjct: 77 AYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLG 121 >NMA1143 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit NmA Neisseria meningitidis Z2491 Length = 125 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 69/105 (65%) Query: 1 MPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSW 60 +P+ IVSI+HRISG+ LF+MLPF+LY L +L E F+ + S VKLV++ + W Sbjct: 17 LPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLW 76 Query: 61 AYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLVA 105 AYLHH AGIR L +D H GL+ ++AR ++ V ++ L V++ Sbjct: 77 AYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLG 121 >PA1581 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Pae Pseudomonas aeruginosa Length = 128 Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 65/106 (61%) Query: 1 MPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSW 60 +P+ A SI+HRISG+ LFL + +L+ LD SL SE F+ +K + KLVI L Sbjct: 20 LPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSEEGFEQVKACLTSPLAKLVIWGLLS 79 Query: 61 AYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLVAL 106 A L+H AG+RHL+MD +G + ++ S V+ I++ L+VL + Sbjct: 80 ALLYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVLAGV 125 >mll4266 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Mlo Mesorhizobium loti Length = 139 Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 58/103 (56%) Query: 2 PLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWA 61 P+ +SI+HRI+G L+ + L ++ S+ TFD++ W +L++ +WA Sbjct: 27 PITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAFGTWLGRLILFGYTWA 86 Query: 62 YLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLV 104 +HH G+RHL+ D GL+K +A K + LV S+ L +L+ Sbjct: 87 LMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLI 129 >BMEI0159 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Bme Brucella melitensis Length = 132 Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 51/97 (52%) Query: 8 SIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWAYLHHFC 67 SI+HRI+G L+ + L S+ SE F+ + S W +L++ +WA LHH Sbjct: 28 SIVHRITGGALYFGTLLLAAWLISAATSEECFNTINALFSSWIGRLILFGYTWALLHHLA 87 Query: 68 AGIRHLIMDNHIGLDKDSARKSSATVLVISIALMVLV 104 G+RH I D ++K +A K + +V S+ +LV Sbjct: 88 GGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 124 >YPO1109 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Ype Yersinia pestis Length = 129 Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 2 PLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWA 61 P+ AI SI+HR+SG+ F+ + +L+LL S+ S+ F + +FVK + + A Sbjct: 21 PVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTA 80 Query: 62 YLHHFCAGIRHLIMD-----NHIGLDKDSARKSSATVLVISIALMVLV 104 +H C GIRHL+MD ++ + SA+ + LV+S+ VLV Sbjct: 81 LAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLV 128 >sdhC [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Eco Escherichia coli K12 Length = 129 Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 2 PLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWA 61 P+ AI SI+HR+SG+ F+ + +L+LL +SL S F+ +FVK ++ + A Sbjct: 21 PITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA 80 Query: 62 YLHHFCAGIRHLIMD-NHIGLDKDSARKSSATVLVISIALMVLVAL 106 +H GIRH++MD ++ ++ ++S+ VI++ L +L + Sbjct: 81 LAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGV 126 >ZsdhC [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit EcZ Escherichia coli O157:H7 EDL933 Length = 129 Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 2 PLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWA 61 P+ AI SI+HR+SG+ F+ + +L+LL +SL S F+ +FVK ++ + A Sbjct: 21 PITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA 80 Query: 62 YLHHFCAGIRHLIMD-NHIGLDKDSARKSSATVLVISIALMVLVAL 106 +H GIRH++MD ++ ++ ++S+ VI++ L +L + Sbjct: 81 LAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGV 126 >ECs0746 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Ecs Escherichia coli O157:H7 Length = 129 Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 2 PLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGTFDYLKGFTSGWFVKLVILALSWA 61 P+ AI SI+HR+SG+ F+ + +L+LL +SL S F+ +FVK ++ + A Sbjct: 21 PITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA 80 Query: 62 YLHHFCAGIRHLIMD-NHIGLDKDSARKSSATVLVISIALMVLVAL 106 +H GIRH++MD ++ ++ ++S+ VI++ L +L + Sbjct: 81 LAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGV 126