BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0160.p (592 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1994 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 983 0.0 NMA1145 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 804 0.0 NMB0950 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 802 0.0 PA1583 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 686 0.0 XF1072 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 664 0.0 VC2089 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 652 0.0 RP128 [C] COG1053 Succinate dehydrogenase/fumarate reductase, fl... 650 0.0 RC0170 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 644 0.0 SPAC1556.02c [C] COG1053 Succinate dehydrogenase/fumarate reduct... 639 0.0 YPO1111 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 637 0.0 >RSc1994 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Rso Ralstonia solanacearum Length = 592 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/592 (79%), Positives = 528/592 (89%) Query: 1 VAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 + A+K+ + R+FD VIVGAGG+GMRASLQLAEAGL+VAVLSKVFPTRSHTVAAQGGIGA Sbjct: 1 MVAVKTGLPRRKFDVVIVGAGGAGMRASLQLAEAGLSVAVLSKVFPTRSHTVAAQGGIGA 60 Query: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120 SLGNMSEDNW++H +DT+KGSD+LGDQDAIEFMCR+AP+ VYELEHFGMPFDRN DGTIY Sbjct: 61 SLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCRQAPQVVYELEHFGMPFDRNADGTIY 120 Query: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEG 180 QRPFGGHT+N GEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIR+++G Sbjct: 121 QRPFGGHTSNYGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRDQDG 180 Query: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 DVLGV ALEMETGE+ +L AKTTLFATGGAGRI+AASTNAFINTGDG+GMAARAG+PL+D Sbjct: 181 DVLGVTALEMETGEVYILEAKTTLFATGGAGRIYAASTNAFINTGDGLGMAARAGIPLED 240 Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 MEFWQFHPTGVAGAGVLITEGVRGEGGIL N +GERFMERYAPTLKDLAPRDFVSRSMDQ Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQ 300 Query: 301 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 EIKEGRG GP+ D+VLLDL H+GA+TI KRLPSI EI KFANVDA KEPIPVVPTIHYQ Sbjct: 301 EIKEGRGCGPNGDYVLLDLTHVGAETIMKRLPSIREIGLKFANVDAIKEPIPVVPTIHYQ 360 Query: 361 MGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 MGGIPTN HGQVV PK GS EVV G YAIGEC+CVSVHGANRLGTNSLLDLVVFGR+AG Sbjct: 361 MGGIPTNYHGQVVVPKNGSPNEVVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRSAG 420 Query: 421 NHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT 480 NHIV L+++ HKP+PA A DR+L R+A L+SS+ E QDVANDIR MQ + GVFRT Sbjct: 421 NHIVAQNLKNREHKPLPADAADRALARLAKLDSSSSGEYAQDVANDIRRNMQAHAGVFRT 480 Query: 481 DALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKES 540 L+ EG +IME+ ER ++ KDKSKVFNTARVEALE+ NL+E AKAT+ SAAAR+ES Sbjct: 481 QKLMDEGVERIMEVTERAANIHLKDKSKVFNTARVEALEVANLVEVAKATMVSAAARRES 540 Query: 541 RGAHAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 RGAHAHSD+ RDD NWLKHTL++SEGNRL+YKPV M+PL+VE+ PKARTF Sbjct: 541 RGAHAHSDFPNRDDDNWLKHTLFYSEGNRLEYKPVQMKPLSVESVPPKARTF 592 >NMA1145 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit NmA Neisseria meningitidis Z2491 Length = 587 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/583 (66%), Positives = 471/583 (80%) Query: 10 TRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDN 69 R+FDAVIVG GG+G+RA+LQL+++GLN AVLSKVFPTRSHTVAAQGGI ASLGN+ ED Sbjct: 5 VRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDR 64 Query: 70 WYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTA 129 W WHM+DTVKGSD+LGDQDAIEFMCR AP+AV ELEH GMPFDR G IYQRPFGGHTA Sbjct: 65 WDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTA 124 Query: 130 NLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVVALE 189 G++ V+RACA ADRTGHA+LHTLYQ+NVRA T FFVEW A DLIR+E GDV+GV A+E Sbjct: 125 EHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAME 184 Query: 190 METGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFHPT 249 METGE+ + HAK +FATGG GRI+A+STNA++NTGDG+G+ ARAG+PL+DMEFWQFHPT Sbjct: 185 METGEVYIFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPT 244 Query: 250 GVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGVG 309 GVAGAGVLITEGVRGEGGIL+N++GERFMERYAPT+KDLA RD VSR+M EI EGRG G Sbjct: 245 GVAGAGVLITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCG 304 Query: 310 PHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPTNIH 369 +KDHVLL + HIGA+ I ++LP I EI+ +FA +D K+PIPVVPT HY MGGIPTN H Sbjct: 305 KNKDHVLLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYH 364 Query: 370 GQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGSRLQ 429 G+VV P+G + V+G+YA GECAC SVHGANRLGTNSLLDLVVFG+AAG+ ++ + Sbjct: 365 GEVVVPQGDEYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKE 424 Query: 430 DQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQEGYT 489 KP+PA A + + +RI L++ T E V + +++ ++Q + GVFRTD +L +G Sbjct: 425 QSDWKPLPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVR 484 Query: 490 KIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAHSDY 549 ++M + ER K KDKSKV+NTAR+EALELDNLIE AKAT+ SA ARKESRGAHA D+ Sbjct: 485 EVMAIAERVKRTEIKDKSKVWNTARIEALELDNLIEVAKATLVSAEARKESRGAHASDDH 544 Query: 550 EQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 +RDD NW+KHTL+ S+ N L YKPV+ +PL+VE KP R + Sbjct: 545 PERDDENWMKHTLYHSDANTLSYKPVHTKPLSVEYIKPAKRVY 587 >NMB0950 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Nme Neisseria meningitidis MC58 Length = 587 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/583 (66%), Positives = 471/583 (80%) Query: 10 TRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDN 69 R+FDAVIVG GG+G+RA+LQL+++GLN AVLSKVFPTRSHTVAAQGGI ASLGN+ ED Sbjct: 5 VRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDR 64 Query: 70 WYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTA 129 W WHM+DTVKGSD+LGDQDAIEFMCR AP+AV ELEH GMPFDR G IYQRPFGGHTA Sbjct: 65 WDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTA 124 Query: 130 NLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVVALE 189 G++ V+RACA ADRTGHA+LHTLYQ+NVRA T FFVEW A DLIR+E GDV+GV A+E Sbjct: 125 EHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAME 184 Query: 190 METGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFHPT 249 METGE+ + HAK +FATGG GRI+A+STNA++NTGDG+G+ ARAG+PL+DMEFWQFHPT Sbjct: 185 METGEVYIFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPT 244 Query: 250 GVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGVG 309 GVAGAGVLITEGVRGEGGIL+N++GERFMERYAPT+KDLA RD VSR+M EI EGRG G Sbjct: 245 GVAGAGVLITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCG 304 Query: 310 PHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPTNIH 369 +KDHVLL + HIGA+ I ++LP I EI+ +FA +D K+PIPVVPT HY MGGIPTN H Sbjct: 305 KNKDHVLLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYH 364 Query: 370 GQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGSRLQ 429 G+VV P+G + V+G+YA GECAC SVHGANRLGTNSLLDLVVFG+AAG+ ++ + Sbjct: 365 GEVVVPQGEDYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKE 424 Query: 430 DQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQEGYT 489 KP+PA A + + +RI L++ T E V + +++ ++Q + GVFRTD +L +G Sbjct: 425 QSDWKPLPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVR 484 Query: 490 KIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAHSDY 549 ++M + ER K KDKSKV+NTAR+EALELDNLIE AKAT+ SA ARKESRGAHA D+ Sbjct: 485 EVMAIAERVKRTEIKDKSKVWNTARIEALELDNLIEVAKATLVSAEARKESRGAHASDDH 544 Query: 550 EQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 +RDD NW+KHTL+ S+ N L YKPV+ +PL+VE KP R + Sbjct: 545 PERDDENWMKHTLYHSDINTLSYKPVHTKPLSVEYIKPAKRVY 587 >PA1583 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Pae Pseudomonas aeruginosa Length = 590 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/589 (56%), Positives = 431/589 (73%), Gaps = 2/589 (0%) Query: 6 SAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNM 65 ++I T FDA+IVG GG+GMRA+LQLA+ G AV++KVFPTRSHTV+AQGGI ++ + Sbjct: 2 ASIRTLSFDAIIVGGGGAGMRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASA 61 Query: 66 S-EDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPF 124 D+W WHM+DTVKGSDY+GDQDAIE+MC P+AV+ELEH G+PF R G IYQRPF Sbjct: 62 DPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPF 121 Query: 125 GGHTANLGEK-PVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVL 183 GG + + G+ R CAAADRTGHALLHTLYQ N++ T F EW A+DL++N++G V+ Sbjct: 122 GGQSKDFGKGGQAARTCAAADRTGHALLHTLYQANLKNGTSFLNEWYAVDLVKNQDGAVV 181 Query: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 G++A+ +ETGE + + +K + ATGGAGRI+A++TNA INTGDG+GMA RAG+P+QD+E Sbjct: 182 GIIAICIETGETVYIRSKAVVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM 241 Query: 244 WQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIK 303 WQFHPTG+AGAGVL+TEG RGEGG LIN++GERFMERYAP KDLA RD V+RSM +E+ Sbjct: 242 WQFHPTGIAGAGVLVTEGCRGEGGYLINAHGERFMERYAPNAKDLAGRDVVARSMVKEVL 301 Query: 304 EGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGG 363 G GVGP+KDHVLL L H+G + + RLP I E++ FA+VD PIPV+PT HY MGG Sbjct: 302 AGNGVGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVIPTCHYMMGG 361 Query: 364 IPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHI 423 + TNIHGQ + ++V+G++A+GE ACVSVHGANRLG NSLLDLVVFGRAAG H+ Sbjct: 362 VATNIHGQAITQDANGNDQIVEGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHL 421 Query: 424 VGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDAL 483 + + + L+ S +R+ + T E V + ++++ MQ Y GVFRT Sbjct: 422 EKALKEGIDARGASESDLEASFKRLNGVNERTSGEEVAPLKRELQSCMQNYFGVFRTGEY 481 Query: 484 LQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGA 543 +Q+G ++ +L ER +V DKS+ FNTAR+EALEL NL+E A+AT +A RKESRGA Sbjct: 482 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGA 541 Query: 544 HAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 HA D+E+RDD NWL HTL+F R+ + VN P TV F+PK RT+ Sbjct: 542 HAREDFEERDDENWLCHTLYFPGEKRVSKRSVNFAPKTVPAFEPKVRTY 590 >XF1072 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Xfa Xylella fastidiosa 9a5c Length = 596 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/591 (57%), Positives = 413/591 (69%), Gaps = 6/591 (1%) Query: 8 ITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 IT ++D V+VGAGG+G+RA+ LA+ GL L+KVFPTRSHTVAAQGGI A+LGNM E Sbjct: 6 ITEHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLTKVFPTRSHTVAAQGGISAALGNMGE 65 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGH 127 D+W +H +DT+KGSD+LGDQDAIE+MCREA AV ELEH+G+PF R G IYQRPFGG Sbjct: 66 DDWRYHFYDTIKGSDWLGDQDAIEYMCREAIPAVIELEHYGVPFSRTAQGKIYQRPFGGM 125 Query: 128 TANLGEKP-VQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVV 186 T GE P +R CAAADRTGHA+LHTLYQ+ + F +E+ ALDLI + EG GV+ Sbjct: 126 TTRYGEGPRAERTCAAADRTGHAMLHTLYQQALAHDARFMIEYFALDLIFDNEGVCCGVL 185 Query: 187 ALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQF 246 AL+M G + + A + ATGG GR + ++T+A TGDG G+ RAGLP+QDMEF QF Sbjct: 186 ALDMAEGSLHLFRAHGVVLATGGYGRTYFSATSAHTCTGDGGGLVMRAGLPMQDMEFVQF 245 Query: 247 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGR 306 HPTG+ GAG LITEGVRGEGGIL NSNGERFMERYAP KDLA RD VSRSM EI+EGR Sbjct: 246 HPTGIYGAGCLITEGVRGEGGILRNSNGERFMERYAPHYKDLASRDVVSRSMIIEIREGR 305 Query: 307 GVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPT 366 GVG HKDH+LLDL H+G I+++LP I E A FA VD TK+PIPV+PT+HY MGGIPT Sbjct: 306 GVGEHKDHILLDLTHLGPSMIQEKLPGIAESARIFAGVDVTKQPIPVLPTVHYNMGGIPT 365 Query: 367 NIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGS 426 N HG+VV G VV G+YA+GE ACVSVHGANRLG+NSLLDLVVFGRA N + Sbjct: 366 NYHGEVVRKIGNDPDAVVPGLYAVGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAET 425 Query: 427 RLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQE 486 +Q HK +P+ + D++L + L + GS + + ++ TMQ VFRT LQE Sbjct: 426 IKPNQPHKVLPSDSCDKALGLLDKLRHADGSTPTAVIRDRMQRTMQSDASVFRTSKTLQE 485 Query: 487 GYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAH 546 G K+ E+ V D+S V+N+ +E EL NL+ A ATI SA RKESRGAHAH Sbjct: 486 GCEKMNEIFALFDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAH 545 Query: 547 SDYEQRDDVNWLKHTLWFSEGN---RLDYKPVNMQPLT--VETFKPKARTF 592 DY RDD NWLKHTL + DY+PV+M L+ V+ PK R + Sbjct: 546 EDYPDRDDENWLKHTLVSVDEKGTCSFDYRPVHMYTLSKDVDVIPPKPRVY 596 >VC2089 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Vch Vibrio cholerae Length = 588 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/587 (57%), Positives = 420/587 (71%), Gaps = 3/587 (0%) Query: 8 ITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 I R FDAV++GAGG+GMRA+LQ++E GL A+LSKVFPTRSHTV+AQGGI +LGN + Sbjct: 3 IPVRSFDAVVIGAGGAGMRAALQISEQGLTCALLSKVFPTRSHTVSAQGGITVALGNSHK 62 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGH 127 D+W WHM+DTVKGSDY+GDQ+AIE+MC+ P++V ELE G+PF R +GTIYQRPFGG Sbjct: 63 DDWQWHMYDTVKGSDYIGDQNAIEYMCKNGPESVIELERMGLPFSRFENGTIYQRPFGGQ 122 Query: 128 TANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVVA 187 + G + R AAADRTGHALLHTLYQ+NV+ KT F EW ALDL++N++G VLG A Sbjct: 123 SKEFGGEQAARTAAAADRTGHALLHTLYQQNVKHKTTIFSEWYALDLVKNQDGAVLGCTA 182 Query: 188 LEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFH 247 + METGEI AK T+ ATGGAGRI+A++TNA INTGDG+GMA RAG+P+QDME WQFH Sbjct: 183 ICMETGEICYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMALRAGVPMQDMEMWQFH 242 Query: 248 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRG 307 PTG+AGAGVL+TEG RGEGG L+N +GERFMERYAP KDLA RD V+RSM EI+EGRG Sbjct: 243 PTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLAGRDVVARSMMIEIREGRG 302 Query: 308 V-GPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPT 366 GP H+ L L H+G D ++ RLP I E++ FA+VD KEPIPV+PT HY MGG+PT Sbjct: 303 CDGPWGPHIKLKLDHLGRDVLESRLPGICELSRTFAHVDPVKEPIPVIPTCHYMMGGVPT 362 Query: 367 NIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGS 426 + GQ + VQG++A GE A VSVHGANRLG NSLLDLVVFGRA G H+ G Sbjct: 363 QVSGQAIKQDSHGKDVEVQGLFACGEIASVSVHGANRLGGNSLLDLVVFGRATGLHL-GE 421 Query: 427 RLQDQSH-KPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQ 485 L+ Q+ +P A ++ SL R E+S G E + D++ MQ VFR + Sbjct: 422 TLRAQAEARPATASDIEASLARTMRWENSKGGEDPVVIRKDLQRCMQNNFSVFREGKAMA 481 Query: 486 EGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHA 545 EG ++ + ER K+ DKS FNT R+E LELDNL+ETA +T +A R ESRGAHA Sbjct: 482 EGLEELKVIRERLKNAHLADKSTEFNTQRIECLELDNLMETAFSTAVAANYRTESRGAHA 541 Query: 546 HSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 DY +RDD NWL H+++ E ++ + VNM P+ + F PK RT+ Sbjct: 542 RFDYPERDDENWLCHSIYNPETEQMSKREVNMTPVYRDPFPPKVRTY 588 >RP128 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Rpr Rickettsia prowazekii Length = 596 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/591 (55%), Positives = 414/591 (70%), Gaps = 7/591 (1%) Query: 8 ITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 I +FD V+VGAGG+G+R++ +A+ GLN A ++K+FPTRSHTVAAQGGI A+LGNM E Sbjct: 7 IIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGE 66 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGH 127 D+W WHM+DTVKGSD+LGDQDAIE+MC+ AP A+ ELEH+G+PF R DG IYQRPFGG Sbjct: 67 DDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTVDGKIYQRPFGGM 126 Query: 128 TANLGE-KPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVV 186 T G+ K QR CAAADRTGHA+LHTLYQ++++ K FF+E+ A+DL+ E+G+ GVV Sbjct: 127 TTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLM-EDGECRGVV 185 Query: 187 ALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQF 246 A ++ G + A + ATGG GR + ++T+A TGDG GM RAGLPLQDMEF QF Sbjct: 186 AWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQF 245 Query: 247 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGR 306 HPTG+ AG LITEG RGEGG L+N+NGERFMERYAP KDLA RD VSR+M EI+EGR Sbjct: 246 HPTGIYSAGCLITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGR 305 Query: 307 GVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPT 366 GVG HKDHV L L H+ + + +RLP I E A FA VD TK+PIPV+PT+HY MGGIPT Sbjct: 306 GVGEHKDHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHYNMGGIPT 365 Query: 367 NIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGS 426 N GQV+ G + +V G+ AIGE ACVSVHGANRLG+NSLLDLVVFGR++ Sbjct: 366 NYQGQVIIKDGKNHNSIVNGIMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAEL 425 Query: 427 RLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQE 486 HKP+ L++ + R + + G+ V D+ ++ TMQ + VFRT LL E Sbjct: 426 IKPASPHKPLQKETLEKIINRFDKVRYANGNILVADLRLKMQRTMQSHVSVFRTQKLLDE 485 Query: 487 GYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAH 546 G I E+ R K + DKS ++N+ VEALELDNL++ A T+ SAAARKESRGAHA Sbjct: 486 GVGMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAR 545 Query: 547 SDYEQRDDVNWLKHTLWFSEGN---RLDYKPVNMQPLT--VETFKPKARTF 592 DY R+D +W+KHTL + + LDYKPV + LT + P R + Sbjct: 546 EDYPDRNDRDWIKHTLSSIDDSGKVVLDYKPVTLTTLTDAISAIPPVKRVY 596 >RC0170 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Rco Rickettsia conorii Length = 596 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/591 (55%), Positives = 415/591 (70%), Gaps = 7/591 (1%) Query: 8 ITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 I +FD V+VGAGG+G+R++ +A+ GLN A ++K+FPTRSHTVAAQGGI A+LGNM E Sbjct: 7 IIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGE 66 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGH 127 D+W WHM+DTVKGSD+LGDQDAIE+MC+ AP A+ ELEH+G+PF R +G IYQRPFGG Sbjct: 67 DDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGM 126 Query: 128 TANLGE-KPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVV 186 T G+ K QR CAAADRTGHA+LHTLYQ++++ K FFVE+ A+DL+ E+G+ GVV Sbjct: 127 TTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFVEYFAIDLLM-EDGECRGVV 185 Query: 187 ALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQF 246 A ++ G + A + ATGG GR + ++T+A TGDG GMA RAGLPLQDMEF QF Sbjct: 186 AWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQF 245 Query: 247 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGR 306 HPTG+ AG LITEG RGEGG L+N+NGERFMERYAP KDLA RD VSR+M EI+EGR Sbjct: 246 HPTGIYSAGCLITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGR 305 Query: 307 GVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPT 366 GVG HKDHV L L H+ + + RLP I E A FA VD TKEPIPV+PT+HY MGGIPT Sbjct: 306 GVGEHKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPT 365 Query: 367 NIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGS 426 N HGQV+ G + VV+G+ AIGE ACVSVHGANRLG+NSLLDLVVFGR++ Sbjct: 366 NYHGQVIIKDGKNHNSVVKGLMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAEL 425 Query: 427 RLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQE 486 H+ I +L++ + R + + G+ V ++ ++ TMQ + VFRT +L E Sbjct: 426 IKPASPHRSIKEESLEKIINRFDKVRHANGNILVAELRLKMQRTMQSHASVFRTQEVLDE 485 Query: 487 GYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAH 546 G I E+ K + DKS ++N+ VEALELDNL++ A T+ SAAARKESRGAHA Sbjct: 486 GAGMISEIRSGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAR 545 Query: 547 SDYEQRDDVNWLKHTL-WFSEGNR--LDYKPVNMQPLT--VETFKPKARTF 592 DY R+D +W+KHTL E + LDYKPV + LT V P R + Sbjct: 546 EDYPDRNDEDWMKHTLSSIDEAGKVVLDYKPVTLTTLTDEVTAVPPVKRVY 596 >SPAC1556.02c [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Spo Schizosaccharomyces pombe Length = 641 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/590 (53%), Positives = 404/590 (68%), Gaps = 6/590 (1%) Query: 3 AIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASL 62 ++K + +DA++VGAGG+G+RA+ LAEAG N A ++K+FPTRSHTVAAQGGI A+L Sbjct: 45 SVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAAL 104 Query: 63 GNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQR 122 GNM++D+W WH +DTVKGSD+LGDQDAI +M +EAPKAV ELEHFG+PF R +G IYQR Sbjct: 105 GNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQR 164 Query: 123 PFGGHTANLGEKPVQRACAA-ADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGD 181 FGG + G+ CAA ADRTGH++LHTLY ++++ T+FF+E+ A+DLI E G+ Sbjct: 165 AFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNTNFFIEYFAMDLIM-EGGE 223 Query: 182 VLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDM 241 GV+A+ +E G I A T+ ATGG GR + + T+A TGDG M +RAGLPLQD+ Sbjct: 224 CRGVIAMNLEDGSIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQDL 283 Query: 242 EFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQE 301 EF QFHPTG+ GAG LITEG RGEGG L+NS GERFMERYAPT KDLA RD VSR+M E Sbjct: 284 EFVQFHPTGIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVE 343 Query: 302 IKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQM 361 I+EGRGVGP KDH L L H+ A+ +K+RLP I E A FA VD TKEPIPV+PT+HY M Sbjct: 344 IREGRGVGPEKDHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNM 403 Query: 362 GGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGN 421 GGIPT G+V+ ++V G+YA GE ACVSVHG NRLG NSLLD+VVFGRA Sbjct: 404 GGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHGGNRLGANSLLDIVVFGRACAL 463 Query: 422 HIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTD 481 HI + + HKP+ A A SL+ + + +S G + ++ D++ TMQ+ VFR + Sbjct: 464 HIKDTLEPNTPHKPLAADAGLDSLKFLDQIRTSQGPKHTSEIRLDMQKTMQRDVSVFRME 523 Query: 482 ALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESR 541 LQEG I +D K + +D+ ++NT VEALEL NL+ A T +A RKESR Sbjct: 524 ETLQEGVKNIARVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALNRKESR 583 Query: 542 GAHAHSDYEQRDDVNWLKHTLWFSEGN----RLDYKPVNMQPLTVETFKP 587 GAHA DY +RDD NW+KHTL + L Y+ V + KP Sbjct: 584 GAHAREDYPERDDKNWIKHTLTWQHKTGDPVTLKYRAVTRTTMDENEVKP 633 >YPO1111 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Ype Yersinia pestis Length = 588 Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/586 (55%), Positives = 417/586 (71%), Gaps = 1/586 (0%) Query: 8 ITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 + R FDAV+VGAGG+GMRA+LQ+++ GL+ A++SKVFPTRSHTV+AQGGI +LGN E Sbjct: 3 LPIREFDAVVVGAGGAGMRAALQISQMGLSCALISKVFPTRSHTVSAQGGITVALGNTHE 62 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGH 127 DNW WHM+DTVKGSDY+GDQDAIE+MC+ P+AV ELEH G+PF R DG+IYQRPFGG Sbjct: 63 DNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAVLELEHMGLPFSRLEDGSIYQRPFGGQ 122 Query: 128 TANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVVA 187 + N G R AAADRTGHALLHTLYQ+N++ T F EW ALDL++N++G +G A Sbjct: 123 SLNFGGGQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAFVGCTA 182 Query: 188 LEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFH 247 + +ETGE++ A+ T+ ATGGAGRI+ ++TNA INTGDG+GMA RAG+P+QDME WQFH Sbjct: 183 INIETGEVVYFKARATILATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFH 242 Query: 248 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRG 307 PTG+AGAGVL+TEG RGEGG L+N +GERFMERYAP KDLA RD V+RS+ EI+EGRG Sbjct: 243 PTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRG 302 Query: 308 V-GPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPT 366 GP H L L H+G D ++ RLP ILE++ FA+VD KEPIPV+PT HY MGGIPT Sbjct: 303 CDGPWGPHAKLKLDHLGKDVLESRLPGILELSRTFAHVDPIKEPIPVIPTCHYMMGGIPT 362 Query: 367 NIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGS 426 + GQ + V+ G++A+GE ACVSVHGANRLG NSLLDLVVFGRAAG H+ S Sbjct: 363 KVTGQAITVNEKGEDVVIPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGMHLQES 422 Query: 427 RLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRTDALLQE 486 ++ + + ++ SL R+ ++ E ++ ++A MQ VFR + + Sbjct: 423 LMEQGASRDASESDIEASLARMNRWNNTRSGEDPVEIRKALQACMQNNFSVFREGDAMAK 482 Query: 487 GYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAH 546 G ++ + ER ++ D S FNT R+E LELDNL+ETA +T SA R ESRGAH+ Sbjct: 483 GLEELKTIRERLQNARLDDTSSEFNTQRIECLELDNLMETAFSTAVSANFRTESRGAHSR 542 Query: 547 SDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 D+ RDDVNWL H+L+ + + VNMQP E F PK R++ Sbjct: 543 FDFPDRDDVNWLCHSLYLPGTESMTRREVNMQPKLREAFPPKVRSY 588