BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0159.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1993 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 389 e-108 NMB0951 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 360 2e-99 NMA1146 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 360 2e-99 YPO1112 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 326 2e-89 ZsdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe... 325 4e-89 ECs0749 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 325 4e-89 sdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-... 325 5e-89 STM0735 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 325 5e-89 VC2088 [C] COG0479 Succinate dehydrogenase/fumarate reductase, F... 321 1e-87 PA1584 [C] COG0479 Succinate dehydrogenase/fumarate reductase, F... 321 1e-87 >RSc1993 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Rso Ralstonia solanacearum Length = 233 Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/230 (80%), Positives = 204/230 (88%), Gaps = 1/230 (0%) Query: 7 FKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGSDA 66 F++YRYDPDKD P MQ VEL ++MLLDAL ++K +D+S+A RRSCREGVCGSDA Sbjct: 5 FEVYRYDPDKDAAPRMQTYEVELDGHERMLLDALVKLKK-LDESIAFRRSCREGVCGSDA 63 Query: 67 MNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDSIP 126 MNINGKNGLAC+TN+ EL E IVL+PLPGLPV+RDLIVDMT FF QY SIKP+LIND P Sbjct: 64 MNINGKNGLACLTNMRELPEKIVLRPLPGLPVVRDLIVDMTQFFNQYHSIKPFLINDEPP 123 Query: 127 PEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRDE 186 PEKERLQSPE+REELDG+YECILCA CSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRD+ Sbjct: 124 PEKERLQSPEEREELDGLYECILCASCSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRDQ 183 Query: 187 ATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 AT RLDNLEDPYRLFRC +IMNCVDVCPKGLNP KAIGKIKELMVRR+V Sbjct: 184 ATSERLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRAV 233 >NMB0951 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Nme Neisseria meningitidis MC58 Length = 235 Score = 360 bits (924), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 168/233 (72%), Positives = 201/233 (86%), Gaps = 2/233 (0%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGS 64 + F+IYRY+PD D KPYMQ +EL+PTD LLDAL R+K+ DD+L+ RRSCREG+CGS Sbjct: 4 MSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKAQ-DDTLSFRRSCREGICGS 62 Query: 65 DAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDS 124 D MNINGKNGLAC+T+L L +P+ ++PLPGLPVIRDLIVDMT FFKQY S+KPY++ND+ Sbjct: 63 DGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIVDMTQFFKQYHSVKPYVVNDN 122 Query: 125 -IPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADS 183 I +KERLQ+ E+R+ELDG+YECILCACCST+CPSFWWNPDKFVGP+GLL AYRFIADS Sbjct: 123 PIDADKERLQTQEERKELDGLYECILCACCSTACPSFWWNPDKFVGPSGLLNAYRFIADS 182 Query: 184 RDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 RD T RLDNL DPYRLFRC +IMNCVDVCPK LNP +AIGKIKE+M++R+V Sbjct: 183 RDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLNPTRAIGKIKEIMLKRAV 235 >NMA1146 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit NmA Neisseria meningitidis Z2491 Length = 235 Score = 360 bits (924), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 168/233 (72%), Positives = 201/233 (86%), Gaps = 2/233 (0%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGS 64 + F+IYRY+PD D KPYMQ +EL+PTD LLDAL R+K+ DD+L+ RRSCREG+CGS Sbjct: 4 MSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKAQ-DDTLSFRRSCREGICGS 62 Query: 65 DAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDS 124 D MNINGKNGLAC+T+L L +P+ ++PLPGLPVIRDLIVDMT FFKQY S+KPY++ND+ Sbjct: 63 DGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIVDMTQFFKQYHSVKPYVVNDN 122 Query: 125 -IPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADS 183 I +KERLQ+ E+R+ELDG+YECILCACCST+CPSFWWNPDKFVGP+GLL AYRFIADS Sbjct: 123 PIDADKERLQTQEERKELDGLYECILCACCSTACPSFWWNPDKFVGPSGLLNAYRFIADS 182 Query: 184 RDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 RD T RLDNL DPYRLFRC +IMNCVDVCPK LNP +AIGKIKE+M++R+V Sbjct: 183 RDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLNPTRAIGKIKEIMLKRAV 235 >YPO1112 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Ype Yersinia pestis Length = 238 Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 192/237 (81%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD D+ P+MQD T++ + D MLLDAL ++K + D +L+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDNAPHMQDYTLDAEEGRDMMLLDALIQLK-EKDPTLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACITNLNEL---TEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLACIT ++ L + IV++PLPGLPV+RDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALQKGNKKIVIRPLPGLPVVRDLVVDMGQFYTQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +ND PP +E LQSPEQR +LDG+YECILCACCSTSCPSFWWNPDKFVGPAGLL AYRF Sbjct: 122 LNDGKNPPAREHLQSPEQRAKLDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLAAYRF 181 Query: 180 IADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 + DSRD T +RLD+L+D + +FRC SIMNCV VCPKGLNP KAIG IK ++++RS Sbjct: 182 LIDSRDTETASRLDDLDDAFSVFRCHSIMNCVSVCPKGLNPTKAIGHIKSMLLQRSA 238 >ZsdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit EcZ Escherichia coli O157:H7 EDL933 Length = 238 Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 156/237 (65%), Positives = 190/237 (80%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD DD P MQD T+E + D MLLDAL ++K + D SL+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACITNLNELTEP---IVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLACIT ++ L +P IV++PLPGLPVIRDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +N+ PP +E LQ PEQRE+LDG+YECILCACCSTSCPSFWWNPDKF+GPAGLL AYRF Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181 Query: 180 IADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 + DSRD T +RLD L D + +FRC SIMNCV VCPKGLNP +AIG IK ++++R+ Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA 238 >ECs0749 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Ecs Escherichia coli O157:H7 Length = 238 Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 156/237 (65%), Positives = 190/237 (80%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD DD P MQD T+E + D MLLDAL ++K + D SL+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACITNLNELTEP---IVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLACIT ++ L +P IV++PLPGLPVIRDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +N+ PP +E LQ PEQRE+LDG+YECILCACCSTSCPSFWWNPDKF+GPAGLL AYRF Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181 Query: 180 IADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 + DSRD T +RLD L D + +FRC SIMNCV VCPKGLNP +AIG IK ++++R+ Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA 238 >sdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Eco Escherichia coli K12 Length = 238 Score = 325 bits (833), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 156/237 (65%), Positives = 190/237 (80%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVEL-KPTDKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD DD P MQD T+E + D MLLDAL ++K + D SL+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACITNLNELTEP---IVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLACIT ++ L +P IV++PLPGLPVIRDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +N+ PP +E LQ PEQRE+LDG+YECILCACCSTSCPSFWWNPDKF+GPAGLL AYRF Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181 Query: 180 IADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 + DSRD T +RLD L D + +FRC SIMNCV VCPKGLNP +AIG IK ++++R+ Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA 238 >STM0735 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Sty Salmonella typhimurium LT2 Length = 239 Score = 325 bits (833), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 191/237 (80%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD D+ P MQD T+E + D MLLDAL ++K + D SL+ RRSCREGVCG Sbjct: 4 LEFSIYRYNPDVDNAPRMQDYTLEGEEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 62 Query: 64 SDAMNINGKNGLACITNLNELTEP---IVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLACIT ++ LT+P IV++PLPGLPVIRDL+VDM F+ QY+ IKPYL Sbjct: 63 SDGLNMNGKNGLACITPISALTQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 122 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +N+ PP +E LQ PEQRE+LDG+YECILCACCSTSCPSFWWNPDKF+GPAGLL AYRF Sbjct: 123 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 182 Query: 180 IADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 + DSRD T +RL+ + D + +FRC SIMNCV VCPKGLNP +AIG IK ++++RS Sbjct: 183 LIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRSA 239 >VC2088 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Vch Vibrio cholerae Length = 236 Score = 321 bits (822), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 151/235 (64%), Positives = 189/235 (80%), Gaps = 4/235 (1%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKP-TDKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L F +YRY+PD D+KPYM+D +E++ +D M+LDAL +K D S+A RRSCREGVCG Sbjct: 3 LNFSLYRYNPDVDNKPYMKDYILEVEEGSDMMVLDALILLKEQ-DPSIAFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACITNLNELT-EPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLI- 121 SD +N+NGKNGLACIT L+ L + IV++PLPGLPV+RDLIVDMT F+ Y +KP+LI Sbjct: 62 SDGLNMNGKNGLACITPLSALKGDKIVIRPLPGLPVVRDLIVDMTQFYDNYAKVKPFLIA 121 Query: 122 NDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 181 +D++PP +E LQSPE+R LDG+YECI+CACC+TSCPSFWWNPDKF+GPAGLL AYR++ Sbjct: 122 DDALPPSRENLQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWLI 181 Query: 182 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 DSRD AT RL NL+D + +FRC IMNCV VCPKGLNP KAIG IK +++ RSV Sbjct: 182 DSRDTATDERLSNLDDAFSVFRCHGIMNCVSVCPKGLNPTKAIGHIKSMLINRSV 236 >PA1584 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Pae Pseudomonas aeruginosa Length = 235 Score = 321 bits (822), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 149/235 (63%), Positives = 184/235 (78%), Gaps = 4/235 (1%) Query: 5 LKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGS 64 L+ +YRY+PDKD PYMQD V+ D M+LD L IK D+ + RRSCREGVCGS Sbjct: 2 LQVSVYRYNPDKDAAPYMQDFQVDTNGKDVMVLDVLALIKEQ-DEGFSYRRSCREGVCGS 60 Query: 65 DAMNINGKNGLACITNLNELT---EPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLI 121 D MNINGKNGLACIT L+ +V++PLPGLPVIRDL+VDM+ F+KQY+ +KP+L Sbjct: 61 DGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQ 120 Query: 122 NDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 181 ND+ P ERLQ+PE+RE+LDG+YECILCACCSTSCPSFWWNPDKF+GPA LLQAYRF+A Sbjct: 121 NDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLA 180 Query: 182 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236 DSRD T RL +L+DP+ +FRCR IMNCV+VCPKGLNP KAIG ++ ++++ Sbjct: 181 DSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT 235