BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0120.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport... 320 2e-87 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 262 5e-70 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 236 5e-62 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 235 6e-62 STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 229 4e-60 DR2118 [E] COG0410 ABC-type branched-chain amino acid transport ... 226 2e-59 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 226 4e-59 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 226 4e-59 livF [E] COG0410 ABC-type branched-chain amino acid transport sy... 225 5e-59 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 225 8e-59 >RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 241 Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 190/223 (85%), Gaps = 4/223 (1%) Query: 18 AVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV-KAQ---RGRVLLHGQDLLQMSPH 73 AVKGI +LN GEIT+LVGANGAGKST+LLA+SGL+ K+Q RG++L G D+ Q S H Sbjct: 19 AVKGIDFALNAGEITSLVGANGAGKSTTLLALSGLIPKSQGEVRGQILFEGADVTQWSAH 78 Query: 74 RIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGL 133 + VE G+VQVAEGRATLTT+TV ENL LGAYTRKD+ +A DLE V+ LFP LK R G+ Sbjct: 79 KRVERGIVQVAEGRATLTTMTVRENLELGAYTRKDRSQIASDLERVFHLFPRLKERIDGM 138 Query: 134 AGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVE 193 AGNLSGGEQQMLAIGRALMA+P+VLLLDEPSMGLAP+I+QEIFRI++ IN G+T+ LVE Sbjct: 139 AGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQEIFRILRTINAEGLTIFLVE 198 Query: 194 QNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QNVRQAL+IAQRGYVLETG+IVL DSG LLGNP+V+EAYLGG Sbjct: 199 QNVRQALKIAQRGYVLETGQIVLADSGQRLLGNPRVLEAYLGG 241 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 125/219 (57%), Positives = 165/219 (75%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 A+KGI L + G+I L+GANGAGK+T+L AI+GLV+AQ+G+++ +GQD+ H I Sbjct: 19 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 78 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 G+ V EGR LTV ENL +GAY RKDK+G+ RDLEW++SLFP LK R L G Sbjct: 79 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 138 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 LSGGEQQMLAIGRALM++PK+L++DEPS+GLAP+++ E+F ++Q+IN+ G T+LLVEQN Sbjct: 139 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 198 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 AL++A GYVLETG+IVLE + LL N V +AYLG Sbjct: 199 LGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 237 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 160/220 (72%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +AV+ +S +NEGE+ +L+GANGAGK+T L +SGLV+ G++ GQ++ +M +IV Sbjct: 17 QAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEFLGQEIQKMPAQKIV 76 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 SG+ QV EGR LTV ENL +GA+ +K+++ +L+ V+S FP L+ R A Sbjct: 77 ASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSRFPRLEERKNQDAAT 136 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 LSGGEQQMLA+GRALM+ PK+LLLDEPSMGLAP+ IQEIF I+Q+I K G TVLL+EQN Sbjct: 137 LSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNA 196 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 +AL I+ RGYVLETG+IVL +G L + +V +AYLGG Sbjct: 197 NKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLGG 236 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 113/223 (50%), Positives = 161/223 (72%), Gaps = 1/223 (0%) Query: 15 DXEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHR 74 + +A+KGISL +NEGE+ +++GANGAGK+T+L ISGL+ + G ++ G++LL+ H Sbjct: 15 NIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSIIFEGKNLLKEKAHN 74 Query: 75 IVESGVVQVAEGRATLTTLTVEENLALGAYTRKDK-DGVARDLEWVYSLFPVLKNRAAGL 133 I + G+ QV EGR + L V++NL LG +T KD + D Y +FP + R L Sbjct: 75 ICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAEKKEEDRANFYKVFPRMSERKNQL 134 Query: 134 AGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVE 193 AG LSGGEQQMLA+GRALM++PK+L+LDEPSMGL+PL ++EIF +++++ + G T+LLVE Sbjct: 135 AGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEVIKQLKEKGTTILLVE 194 Query: 194 QNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QN + AL I+ R YV+ETG+IVLE +LL N +V +AYLGG Sbjct: 195 QNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLGG 237 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 153/220 (69%), Gaps = 1/220 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +A+ +SL +N+GEI L+GANGAGK+T L + G +A GRV+ G+D+ +I+ Sbjct: 19 QALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRVVFDGKDITDWQTAKIM 78 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 V V EGR + +TVEENLA+G + ++D ++WVY LFP L R AG Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFF-AERDRFQERIKWVYELFPRLHERRIQRAGT 137 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 +SGGEQQMLAIGRALM++P++LLLDEPS+GLAP+IIQ+IF ++++ + GMT+ LVEQN Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QAL++A RGYVLE G +VL D+G LL N V AYLGG Sbjct: 198 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 237 >DR2118 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 236 Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 157/220 (71%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +AV+G+SL + EGE+ L+GANGAGK+T+L A+S +V+ G + G+D+ ++ P V Sbjct: 17 QAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIRFGGRDITRIPPDEAV 76 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 + G+ Q EGR L ++++NL LGAY R D+ G+ DL+ +Y FP L R LAG Sbjct: 77 KIGIAQSPEGRQVLARQSIQDNLELGAYVRSDRAGIQADLQRMYDRFPRLGERRTQLAGT 136 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 LSGGEQQMLAI RALM++PK+LLLDEPS+GLAPLI++EIF I++E+N+ GMT+LLVEQN Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPLIVREIFTIIRELNEQGMTILLVEQNA 196 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 + A+ + R YVLE G++ + L+ + +V+ AYLGG Sbjct: 197 KLAMNASHRTYVLEAGQLTFSGVSSELVNDERVLHAYLGG 236 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 151/220 (68%), Gaps = 1/220 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +A+ +SL +N+GEI L+GANGAGK+T L + G +A GR++ +D+ +I+ Sbjct: 23 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIM 82 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 V V EGR + +TVEENLA+G + ++D ++WVY LFP L R AG Sbjct: 83 REAVAIVPEGRRVFSRMTVEENLAMGGFF-AERDQFQERIKWVYELFPRLHERRVQRAGT 141 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 +SGGEQQMLAIGRALM+ P++LLLDEPS+GLAP+IIQ+IF ++++ + GMT+ LVEQN Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QAL++A RGYVLE G +VL D+G LL N V AYLGG Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 151/220 (68%), Gaps = 1/220 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +A+ +SL +N+GEI L+GANGAGK+T L + G +A GR++ +D+ +I+ Sbjct: 23 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIM 82 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 V V EGR + +TVEENLA+G + ++D ++WVY LFP L R AG Sbjct: 83 REAVAIVPEGRRVFSRMTVEENLAMGGFF-AERDQFQERIKWVYELFPRLHERRVQRAGT 141 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 +SGGEQQMLAIGRALM+ P++LLLDEPS+GLAP+IIQ+IF ++++ + GMT+ LVEQN Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QAL++A RGYVLE G +VL D+G LL N V AYLGG Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241 >livF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 241 Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 151/220 (68%), Gaps = 1/220 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +A+ +SL +N+GEI L+GANGAGK+T L + G +A GR++ +D+ +I+ Sbjct: 23 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIM 82 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 V V EGR + +TVEENLA+G + ++D ++WVY LFP L R AG Sbjct: 83 REAVAIVPEGRRVFSRMTVEENLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGT 141 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 +SGGEQQMLAIGRALM+ P++LLLDEPS+GLAP+IIQ+IF ++++ + GMT+ LVEQN Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 QAL++A RGYVLE G +VL D+G LL N V AYLGG Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 241 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 110/219 (50%), Positives = 157/219 (71%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 +A+K I+L++ +GE+ L+GANGAGKST+L AIS +V + G+++ G+++ + PH +V Sbjct: 46 QALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIVTPKNGQIIYSGRNITRRLPHEVV 105 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 + G+ EGR L TV +NL LGAY R ++ + D++ + LFP L R LAG Sbjct: 106 KFGIAHCPEGRRVLAKQTVLDNLLLGAYIRSNQTEIKADIKQQFELFPRLAQRQNQLAGT 165 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 LSGGEQQMLAI RALM++P++LLLDEPS+GLAP I++EIF I++ + TG+T+LLVEQN Sbjct: 166 LSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVREIFSIIENLRATGVTILLVEQNA 225 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 AL+IA RGYVLE G I L + +NL+ + +V +AYLG Sbjct: 226 NLALQIADRGYVLEAGSITLSGAASNLINDERVKKAYLG 264