BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0096.p (120 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase an... 167 4e-42 YPO0160 [PR] COG2146 Ferredoxin subunits of nitrite reductase an... 89 2e-18 nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and r... 89 2e-18 ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and ... 89 2e-18 ECs4217 [PR] COG2146 Ferredoxin subunits of nitrite reductase an... 89 2e-18 Rv0253 [PR] COG2146 Ferredoxin subunits of nitrite reductase and... 87 7e-18 STM3475 [PR] COG2146 Ferredoxin subunits of nitrite reductase an... 85 3e-17 >RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Rso Ralstonia solanacearum Length = 113 Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 81/114 (71%), Positives = 91/114 (79%), Gaps = 4/114 (3%) Query: 5 QQIKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAA 64 Q HWT +C L +IVPNTGV ALVG Q+AVFHV G+ RV+A+GNYDPN DAA Sbjct: 1 MQANHWTAICALDDIVPNTGVCALVGGAQIAVFHV----AGDAPRRVYAIGNYDPNADAA 56 Query: 65 VLSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 VLSRGLVGNLGERIVVASPIYK HFDL TGECLE PANS+PA+ A++ DGKVWI Sbjct: 57 VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGKVWI 110 >YPO0160 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Ype Yersinia pestis Length = 108 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 6/114 (5%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAVL 66 + W P+C L +I+P +GV L+ QQVAVF R + Q VFA+ N DP A+VL Sbjct: 1 MSQWIPLCPLNDILPGSGVCGLIKQQQVAVF----RPYADEQ--VFAISNIDPFAQASVL 54 Query: 67 SRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWIGA 120 SRGL+ + VASP+ K HF L G CLE+ S+ + R+ DG V + A Sbjct: 55 SRGLIAEHQGELWVASPLKKQHFRLRDGFCLEDEDRSVTHYDVRVRDGMVQVNA 108 >nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Eco Escherichia coli K12 Length = 108 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 6/112 (5%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAVL 66 + W +C + +I+P TGV AL+GD+QVA+F Q VFA+ N DP +++VL Sbjct: 1 MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54 Query: 67 SRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 SRGL+ + VASP+ K F L+ G C+E+ S+ + AR+ DG V + Sbjct: 55 SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQL 106 >ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases EcZ Escherichia coli O157:H7 EDL933 Length = 108 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 6/112 (5%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAVL 66 + W +C + +I+P TGV AL+GD+QVA+F Q VFA+ N DP +++VL Sbjct: 1 MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54 Query: 67 SRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 SRGL+ + VASP+ K F L+ G C+E+ S+ + AR+ DG V + Sbjct: 55 SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQL 106 >ECs4217 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Ecs Escherichia coli O157:H7 Length = 108 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 6/112 (5%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAVL 66 + W +C + +I+P TGV AL+GD+QVA+F Q VFA+ N DP +++VL Sbjct: 1 MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54 Query: 67 SRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 SRGL+ + VASP+ K F L+ G C+E+ S+ + AR+ DG V + Sbjct: 55 SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQL 106 >Rv0253 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Mtu Mycobacterium tuberculosis H37Rv Length = 118 Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 9/114 (7%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGD-QQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAV 65 I+ WT C ++P GV L+ D QVA+F + D S V AVGN DP AAV Sbjct: 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGS-------VHAVGNVDPFSGAAV 59 Query: 66 LSRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIA-DGKVWI 118 +SRG+VG+ G R +V SPI K F L G CL++P S+P +PAR+ +G++ + Sbjct: 60 MSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 >STM3475 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Sty Salmonella typhimurium LT2 Length = 108 Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 6/112 (5%) Query: 7 IKHWTPVCDLGEIVPNTGVAALVGDQQVAVFHVIDRSQGEPQPRVFAVGNYDPNCDAAVL 66 + W +C + +I+P TGV AL G +QVA+F Q VFA+ N DP +A+VL Sbjct: 1 MSQWQNICKIDDILPGTGVCALSGGEQVAIFRPYHSDQ------VFAISNIDPFFEASVL 54 Query: 67 SRGLVGNLGERIVVASPIYKHHFDLTTGECLEEPANSIPAWPARIADGKVWI 118 SRGL+ + VASP+ K F L+ G C+E+ S+ + AR+ DG V + Sbjct: 55 SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYDARVKDGVVQL 106