BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0032.p (534 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa 139 2e-32 SMc01370 [T] COG3706 Response regulator containing a CheY-like r... 136 1e-31 BH2234 [T] COG3706 Response regulator containing a CheY-like rec... 134 4e-31 aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus 132 3e-30 PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa 129 1e-29 CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides 129 2e-29 aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 124 4e-28 XF0986_2 [T] COG2199 FOG Xfa Xylella fastidiosa 9a5c 123 1e-27 PA0169 [T] COG2199 FOG Pae Pseudomonas aeruginosa 122 3e-27 RP237 [T] COG3706 Response regulator containing a CheY-like rece... 121 4e-27 >PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 307 Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 101/158 (63%) Query: 367 DQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATGDEVLVHMV 426 D LTG+ NR MD++L RE+ A R PL V +LD+D FKR+ND +GHA GDE L + Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209 Query: 427 QVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTKRIFMHESQRLLITF 486 + I++ LR +D++ RFGGEEFLVL+ T Q A + R+++ + + + H + L ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRHAGEPLKLSI 269 Query: 487 SAGVAVYHPGESQADLLKRADVALYKAKNAGKNRIVFA 524 S G A PGE DLL+R D ALY+AK G+NR+ A Sbjct: 270 SLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRCA 307 >SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Sme Sinorhizobium meliloti Length = 455 Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 109/184 (59%), Gaps = 6/184 (3%) Query: 344 EKAEERIQTLEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDL 403 + +R++ QQ + EL D LTG NRR ++ L I A R PL + + D+ Sbjct: 273 KHCNDRLRASVQQTI---ELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDI 329 Query: 404 DDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQII 463 D FKR+NDTHGH GD+VL +R T+R D+ RFGGEEF+V+MP+T P+ A + Sbjct: 330 DRFKRVNDTHGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVA 389 Query: 464 TRVQRELTKRIF--MHESQRLLITFSAGVAVYHP-GESQADLLKRADVALYKAKNAGKNR 520 R++ + R F + L +T S G+A P G++ LLKRAD+ALY+AKN G+NR Sbjct: 390 ERLRLAVESRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNR 449 Query: 521 IVFA 524 +V A Sbjct: 450 VVAA 453 >BH2234 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Bha Bacillus halodurans Length = 314 Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 119/197 (60%), Gaps = 5/197 (2%) Query: 326 QEEATRSRDAMEDARQEVEKAEERIQTLEQQLLQMGELVREDQLTGSLNRRGMDESLDRE 385 ++E++R R Q V+ EE+ + L+ ++ ++ L R D LT +NRR M E + E Sbjct: 119 KQESSRKR-----LEQHVKVLEEQNEKLKGKIQKVDRLSRVDFLTNLMNRRDMQEKIRAE 173 Query: 386 ITNALRRDTPLCVALLDLDDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGE 445 I ++R +A++D+D FK INDT+GH GD VL H V ++ ++R D ++R+GGE Sbjct: 174 INRSIRHGRSFTLAIVDIDFFKNINDTYGHDCGDHVLKHFVSTLKNSVRSSDYVSRWGGE 233 Query: 446 EFLVLMPETAPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGVAVYHPGESQADLLKR 505 EFL+L PET ++ + ++++++ + +++ + IT + G++ Y P +L+K Sbjct: 234 EFLLLFPETKLEEGKRACEKIRQKINESPVIYKGMSISITATFGISEYRPSVRIEELIKA 293 Query: 506 ADVALYKAKNAGKNRIV 522 AD ALYK K GKN++V Sbjct: 294 ADDALYKGKKTGKNQVV 310 >aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 168 Score = 132 bits (331), Expect = 3e-30, Method: Composition-based stats. Identities = 67/162 (41%), Positives = 107/162 (66%), Gaps = 2/162 (1%) Query: 364 VREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATGDEVLV 423 ++ D LTG LNRR + L + +L +TP +A++D+D+FK+INDT+GH GD+VL Sbjct: 7 LKVDPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDKVLK 66 Query: 424 HMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTKRIFMHESQRLL 483 + ++I++ LR+ D + R+GGEEFL+LMP T +DAV+I+ ++++E+ + + + Sbjct: 67 EVAKIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPICWQGKEIR 126 Query: 484 ITFSAGVA--VYHPGESQADLLKRADVALYKAKNAGKNRIVF 523 +T S GV VY+ +S + +K AD LY AK GKNR+VF Sbjct: 127 VTISVGVCSDVYNGLKSPEEYIKCADEKLYLAKRTGKNRVVF 168 >PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 671 Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 132/255 (51%), Gaps = 30/255 (11%) Query: 270 VKNMMLTFVDRLSAMVSTTDNYQRTIRGFSQQISQAGNIADLNSVLSEIMTETQKAQEEA 329 + ++ L RL+ ++++ D +QR QA + +++ L +M +++A Sbjct: 447 LNSLKLAVDSRLNGLLASMDEHQR---------EQAEHEQEVSGRLQALMERVNSMEQDA 497 Query: 330 TRSRDAMEDARQEVEKAEERIQTLEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNA 389 +ED RQ+ D LTG NR + E L++E+ Sbjct: 498 KAFHSHLEDQRQKA---------------------LTDPLTGLPNRAALSERLEQEVARR 536 Query: 390 LRRDTPLCVALLDLDDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLV 449 R L +A+LD+D FKRIND GH GD+VL + +R+ LR+ D IARFGGEEF+V Sbjct: 537 HRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVV 596 Query: 450 LMPETAPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGVAVYHPGESQADLLKRADVA 509 L+P T+ + Q++ R++ + F + + L IT SAG+ + E+ + +RAD A Sbjct: 597 LLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQA 656 Query: 510 LYKAKNAGKNRIVFA 524 LY+AK AG++R+ A Sbjct: 657 LYRAKRAGRDRLEVA 671 >CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides Length = 353 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 17/255 (6%) Query: 281 LSAMVSTTDNYQRTIRGFSQQISQAG-------NIADLNSVLSEIMTETQKAQEEATRSR 333 L A+ N Q++ F Q+++ A ++A + +V+ I T++ +E Sbjct: 97 LEAVSKAIQNAQKSNAAFGQELAGASKSLDTHTDVASIKAVVGSIAEATRRVHKENQSLE 156 Query: 334 DAMEDARQEVEKAEERIQTLEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNALRRD 393 + D+ EVE+ L + L Q+ D LT NR+ D+ LDR A Sbjct: 157 ARLADSTAEVER-------LREHLEQVRRDATTDGLTNLANRKAFDDELDRACAEAEEGG 209 Query: 394 TPLCVALLDLDDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPE 453 T +C+A+LD+D FK NDT GH TGD+V+ ++ VI AR+GGEEF ++ P Sbjct: 210 TTICLAVLDIDHFKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPR 269 Query: 454 TAPQDAVQIITRVQRELTKRIFMHESQR---LLITFSAGVAVYHPGESQADLLKRADVAL 510 A + ++ E++ R+ S IT S+G A PGES +++RAD AL Sbjct: 270 EAASVVATTLEEIRVEVSSRMLKRRSTNEDLGAITVSSGFAERKPGESGHSVMERADAAL 329 Query: 511 YKAKNAGKNRIVFAD 525 Y +K G+NR+ A+ Sbjct: 330 YASKRGGRNRVTAAE 344 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 8/211 (3%) Query: 319 MTETQKAQEEATRSRDAMEDARQEVEKAEERIQTLEQQLLQMGE-------LVREDQLTG 371 ++T +E A RS+D + + + I+TL++ L++ + + D LTG Sbjct: 32 FSKTDLLRENAMRSKDKDSEIYELKVAVIKMIETLKKILIETSKEKTLYERMALTDPLTG 91 Query: 372 SLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATGDEVLVHMVQVIRE 431 NRR E ++E+ A R + ++D+D+FK+INDT+GH GD VL + ++++ Sbjct: 92 LYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDLVLKKISEILKR 151 Query: 432 TLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTKR-IFMHESQRLLITFSAGV 490 +R D++ARFGGEEF+V++ T AV+ +++R + + I + ++L +T S GV Sbjct: 152 NVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNGEKLRVTVSIGV 211 Query: 491 AVYHPGESQADLLKRADVALYKAKNAGKNRI 521 + Y ES +L+K AD ALY+AK GKNR+ Sbjct: 212 STYRGHESLEELIKEADQALYEAKRKGKNRV 242 >XF0986_2 [T] COG2199 FOG Xfa Xylella fastidiosa 9a5c Length = 222 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 94/155 (60%) Query: 367 DQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATGDEVLVHMV 426 D LTG+L R ++ L+R+I +A + TPL VA +D+D FKRIND +GHA GD L +V Sbjct: 64 DGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQVV 123 Query: 427 QVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTKRIFMHESQRLLITF 486 Q +R LR D + R GG+E + ++P A ++ ++ ++ + F E RL T Sbjct: 124 QRVRGWLRASDALGRHGGDELIAILPGADLAAARRVAEGIRIAVSSQPFQFECTRLRCTL 183 Query: 487 SAGVAVYHPGESQADLLKRADVALYKAKNAGKNRI 521 S GVA + P ES LL+RAD LY +K AG++R+ Sbjct: 184 SLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 218 >PA0169 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 235 Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 341 QEVEKAEERIQTLEQQL-LQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVA 399 ++V + +R Q + + L L + E D LTG NRR + E L E + R +A Sbjct: 36 EKVARISDRYQQMMRDLNLALKEASIRDPLTGLPNRRMLLERLREENERSQRHGQSYVLA 95 Query: 400 LLDLDDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDA 459 +LD+D FK++NDT GH +GD VLV + + + LR+ D+ R+GGEEFL+L+P+T QDA Sbjct: 96 MLDVDFFKQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFLLLLPQTRLQDA 155 Query: 460 VQIITRVQRELTKRIFMHESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKN 519 ++ RV+ + ++ L +T S GV + GE+ + + RAD AL AK +G++ Sbjct: 156 GPVLERVRDSVRTLAVRVGTEALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRD 215 Query: 520 RIVFAD-PPAP 529 + VFA PP P Sbjct: 216 KCVFAALPPLP 226 >RP237 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Rpr Rickettsia prowazekii Length = 450 Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 2/172 (1%) Query: 353 LEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDT 412 L L Q L +D LTG NRR D L + I A + + L + + D+D+FK +NDT Sbjct: 277 LRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDT 336 Query: 413 HGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTK 472 +GH GD+VL + ++++ TLR D+IARFGGEEF +L+ + A++ RV+ ++ Sbjct: 337 YGHQAGDKVLTTVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEY 396 Query: 473 RIFMHESQR--LLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKNRIV 522 F E Q L T S GV Y ES +KRAD A+Y+AK GKN++V Sbjct: 397 MDFYIEGQIEPLKKTISIGVTEYKKEESIESFIKRADKAMYEAKTTGKNKVV 448