BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0027.p (206 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2118 [M] COG1596 Periplasmic protein involved in polysacchari... 92 9e-19 wza [M] COG1596 Periplasmic protein involved in polysaccharide e... 91 2e-18 Zwza [M] COG1596 Periplasmic protein involved in polysaccharide ... 91 2e-18 ECs2867 [M] COG1596 Periplasmic protein involved in polysacchari... 91 2e-18 yccZ [M] COG1596 Periplasmic protein involved in polysaccharide ... 76 4e-14 ZyccZ [M] COG1596 Periplasmic protein involved in polysaccharide... 76 4e-14 ECs1139 [M] COG1596 Periplasmic protein involved in polysacchari... 76 4e-14 PM1016 [M] COG1596 Periplasmic protein involved in polysaccharid... 75 7e-14 AGl177_1 [M] COG1596 Periplasmic protein involved in polysacchar... 67 2e-11 VC0936 [M] COG1596 Periplasmic protein involved in polysaccharid... 65 8e-11 >STM2118 [M] COG1596 Periplasmic protein involved in polysaccharide export Sty Salmonella typhimurium LT2 Length = 379 Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 23/178 (12%) Query: 41 EYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGKTP 87 +YR+GPGD LNV VW +PE L P V+PDG P + GKT Sbjct: 84 QYRVGPGDVLNVTVWDHPE--LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVSVVGKTL 141 Query: 88 KEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKP-QALPYRKEMSLLDVV 146 E+ ++I L+ YI DP V V + F S + + GQ K Q +++LD + Sbjct: 142 SEIRSDITGRLAKYIADPQVDVNIAAFR---SQKAYISGQVNKSGQQAITNVPLTVLDAI 198 Query: 147 IAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 A GG T+ A + +V+ +GK+ +I+ L LM++GD+S N + PGDIL +P + Sbjct: 199 NAAGGLTDMA--DWRNVVLTHNGKEQRIS--LQALMQNGDLSQNRLLYPGDILYVPRN 252 >wza [M] COG1596 Periplasmic protein involved in polysaccharide export Eco Escherichia coli K12 Length = 379 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N +YR+GPGD LNV VW +PE L P V+PDG P + GK Sbjct: 82 NYQYRVGPGDVLNVTVWDHPE--LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKP-QALPYRKEMSLLD 144 T E+ ++I L+ YI DP V V + F S + + GQ K Q +++LD Sbjct: 140 TLAEIRSDITGRLATYIADPQVDVNIAAFR---SQKAYISGQVNKSGQQAITNVPLTILD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T+ A + +V+ +G++ +I+ L LM++GD++ N + PGDIL +P + Sbjct: 197 AINAAGGLTDTA--DWRNVVLTHNGREERIS--LQALMQNGDLNQNRLLYPGDILYVPRN 252 >Zwza [M] COG1596 Periplasmic protein involved in polysaccharide export EcZ Escherichia coli O157:H7 EDL933 Length = 379 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N +YR+GPGD LNV VW +PE L P V+PDG P + GK Sbjct: 82 NYQYRVGPGDVLNVTVWDHPE--LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKP-QALPYRKEMSLLD 144 T E+ ++I L+ YI DP V V + F S + + GQ K Q +++LD Sbjct: 140 TLAEIRSDITGRLATYIADPQVDVNIAAFR---SQKAYISGQVNKSGQQAITNVPLTILD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T+ A + +V+ +G++ +I+ L LM++GD++ N + PGDIL +P + Sbjct: 197 AINAAGGLTDTA--DWRNVVLTHNGREERIS--LQALMQNGDLNQNRLLYPGDILYVPRN 252 >ECs2867 [M] COG1596 Periplasmic protein involved in polysaccharide export Ecs Escherichia coli O157:H7 Length = 379 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N +YR+GPGD LNV VW +PE L P V+PDG P + GK Sbjct: 82 NYQYRVGPGDVLNVTVWDHPE--LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKP-QALPYRKEMSLLD 144 T E+ ++I L+ YI DP V V + F S + + GQ K Q +++LD Sbjct: 140 TLAEIRSDITGRLATYIADPQVDVNIAAFR---SQKAYISGQVNKSGQQAITNVPLTILD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T+ A + +V+ +G++ +I+ L LM++GD++ N + PGDIL +P + Sbjct: 197 AINAAGGLTDTA--DWRNVVLTHNGREERIS--LQALMQNGDLNQNRLLYPGDILYVPRN 252 >yccZ [M] COG1596 Periplasmic protein involved in polysaccharide export Eco Escherichia coli K12 Length = 379 Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N EYRIG GD L V VW +PE L P V DG P ++ +GK Sbjct: 82 NYEYRIGIGDVLMVTVWDHPE--LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRK-EMSLLD 144 T +V EI L + I P V V V F S + V G+ +K P ++++D Sbjct: 140 TLTQVRNEITARLDSVIESPQVDVSVAAFR---SQKAYVTGEVSKSGQQPITNIPLTIMD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T A + +V+ +G +TK V L LM+ GD+ N + PGDIL IP + Sbjct: 197 AINAAGGLT--ADADWRNVVLTQNGVKTK--VNLYALMQRGDLRQNKLLHPGDILFIPRN 252 >ZyccZ [M] COG1596 Periplasmic protein involved in polysaccharide export EcZ Escherichia coli O157:H7 EDL933 Length = 379 Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N EYRIG GD L V VW +PE L P V DG P ++ +GK Sbjct: 82 NYEYRIGIGDVLMVTVWDHPE--LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRK-EMSLLD 144 T +V EI L + I P V V V F S + V G+ +K P ++++D Sbjct: 140 TLTQVRNEITARLDSVIESPQVDVSVAAFR---SQKAYVTGEVSKSGQQPITNIPLTIMD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T A + +V+ +G +TK V L LM+ GD+ N + PGDIL IP + Sbjct: 197 AINAAGGLT--ADADWRNVVLTQNGVKTK--VNLYALMQRGDLRQNKLLHPGDILFIPRN 252 >ECs1139 [M] COG1596 Periplasmic protein involved in polysaccharide export Ecs Escherichia coli O157:H7 Length = 379 Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 23/180 (12%) Query: 39 NSEYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGK 85 N EYRIG GD L V VW +PE L P V DG P ++ +GK Sbjct: 82 NYEYRIGIGDVLMVTVWDHPE--LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGK 139 Query: 86 TPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRK-EMSLLD 144 T +V EI L + I P V V V F S + V G+ +K P ++++D Sbjct: 140 TLTQVRNEITARLDSVIESPQVDVSVAAFR---SQKAYVTGEVSKSGQQPITNIPLTIMD 196 Query: 145 VVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 + A GG T A + +V+ +G +TK V L LM+ GD+ N + PGDIL IP + Sbjct: 197 AINAAGGLT--ADADWRNVVLTQNGVKTK--VNLYALMQRGDLRQNKLLHPGDILFIPRN 252 >PM1016 [M] COG1596 Periplasmic protein involved in polysaccharide export Pmu Pasteurella multocida Length = 387 Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 23/178 (12%) Query: 41 EYRIGPGDNLNVIVWRNPEVSLVVP-------------VRPDGKFSTPLANDIEASGKTP 87 +YR+GPGD LN+ VW +PE L P V +G P I SG T Sbjct: 83 QYRVGPGDVLNITVWDHPE--LTTPAGAYRSAAESGSQVHANGTIFYPYVGSIHVSGLTV 140 Query: 88 KEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKP-QALPYRKEMSLLDVV 146 ++ ++ K L+ YI++P + V V + S + + G+ +P Q ++LLD + Sbjct: 141 SQIRNKLTKRLANYISEPQIEVSVATYQ---SKKAYITGEVNRPGQQYLTNVPLTLLDAI 197 Query: 147 IAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPES 204 GG +E A + ++ GK KI+V + L++ GD+S N + GDI+ +P + Sbjct: 198 NHAGGLSEHADWHNVTLNS--KGKDEKISV--EALIQRGDLSQNRLLVDGDIVHVPRN 251 >AGl177_1 [M] COG1596 Periplasmic protein involved in polysaccharide export Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 174 Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Query: 6 VRYASYILASTLLLAGCASRPVADTASVPAAPVNSEYRIGPGDNLNVIVWRNPEVSLVVP 65 +R+ + S+L++A +A +PAA + Y++ GD L + V+ +P ++ + P Sbjct: 1 MRFLTRSRGSSLMIASTTFLSLA-FYQIPAAADGTNYKVATGDVLTISVYGDPGLTGLFP 59 Query: 66 VRPDGKFSTPLANDIEASGKTPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSDQIRVI 125 V DG PL ++ +T E+G I++ L++++ + V V V ++ I+ V+ Sbjct: 60 VSADGTIGYPLLGNVNVVDQTVNEIGERISRDLASHVANRSVAVAVKEYAPIF-----VV 114 Query: 126 GQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKD 184 G KP +R M +L++ GG E A S I+L+ +Q + + L +D Sbjct: 115 GDVQKPGKYEFRPGMIVLELFALGGGLREPNAQRDTSGIQLIAAQQEYEDMSMQLLSQD 173 >VC0936 [M] COG1596 Periplasmic protein involved in polysaccharide export Vch Vibrio cholerae Length = 175 Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Query: 42 YRIGPGDNLNVIVWRNPEVSLVVPVRPDGKFSTPLANDIEASGKTPKEVGAEIAKA-LSA 100 YR+G GD + + V+ PE+S V +G P I GKT +EV I L Sbjct: 26 YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85 Query: 101 YITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNR 160 Y+ +P V+V + + + V GQ KP + PY +++ + GG TE R Sbjct: 86 YLINPNVSVSILEYRPFF-----VNGQVMKPGSYPYHPGLTVNKAITIAGGFTE-----R 135 Query: 161 ASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPESIF 206 AS L I+ D K + ++PGDIL + ES F Sbjct: 136 ASKTNLF------ISSSDDPEAKPTKATLLSKLQPGDILTVAESFF 175