BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0006.p         (445 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0882 [C] COG0348 Polyferredoxin Bme Brucella melitensis          484   e-136
all3558_3 [C] COG0348 Polyferredoxin Nos Nostoc sp. PCC 7120           84   5e-16
slr1529_3 [C] COG0348 Polyferredoxin Syn Synechocystis                 74   6e-13

>BMEII0882 [C] COG0348 Polyferredoxin Bme Brucella melitensis
          Length = 457

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/448 (52%), Positives = 316/448 (70%), Gaps = 5/448 (1%)

Query: 1   MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60
           +R H   IR++QW+++  YA L+++P+  P+PD  +H+WSN  L AQF FWGIWWPFVLV
Sbjct: 12  LRDHQRAIRAIQWVIIGAYAGLLIIPLMTPMPDRLSHIWSNAVLFAQFMFWGIWWPFVLV 71

Query: 61  SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120
           SMVLMG  WCGV  P  AL E AS+HG GRA PRW++W GWPFVAFA TTIYGQMVSVYQ
Sbjct: 72  SMVLMGPTWCGVSLPGSALAERASRHGYGRATPRWIKWKGWPFVAFACTTIYGQMVSVYQ 131

Query: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180
           YPK V++VLGGST+ A+ +G+LYGR+KRVWC+YLCPV+GVF +LAKLAP++Y+V+ + W 
Sbjct: 132 YPKPVIIVLGGSTLAAMAVGFLYGREKRVWCRYLCPVSGVFAVLAKLAPVYYRVDRETWN 191

Query: 181 A-SYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKT 239
                P   +  +NCAPLVP++ M+GAS CHMCGRC+G +DAI L+ R P+ EVV+    
Sbjct: 192 DWERKPGTPMPHVNCAPLVPIKTMRGASACHMCGRCAGFKDAIQLSGRSPSYEVVEVAGD 251

Query: 240 ENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLT 299
               WES L+++G++GIA GAF W  SP ++ +KQ +A WL++   +     Q PWW+LT
Sbjct: 252 APKPWESLLIIFGMMGIAAGAFQWASSPIYVDVKQWLAEWLLEHGGIAMIQPQLPWWVLT 311

Query: 300 NYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIP 359
           NYP  +D+ T LDG +++ YILA   +    V  + A+A   LG W+  RF+HLVQ LIP
Sbjct: 312 NYPDLNDMMTPLDGGLMIAYILAVACITSIAVGGLVAIANWALGGWKAARFHHLVQCLIP 371

Query: 360 LAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWVQ 419
           +AGCGVF+GLSATT++LL+AE +P+ + +D+R  LL    +WS WL W V  R+     +
Sbjct: 372 MAGCGVFLGLSATTVTLLKAEDVPLAFVSDLRILLLLGAVVWSAWLLWSVARRYTSSMAR 431

Query: 420 QCL--AMLPLMGGLALVNTAWWLMFWGW 445
           + +  AM  L  G+A  N  W L+FW W
Sbjct: 432 RLVATAMGALATGVAAFN--WVLLFWIW 457


>all3558_3 [C] COG0348 Polyferredoxin Nos Nostoc sp. PCC 7120
          Length = 459

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 32/233 (13%)

Query: 50  FWGIWWPFVLVSMVLMGRVWCGVLCP---EGALTEFASKHGRGRAIPRWVR-----WGGW 101
           FW  WWP +L+S    GRVWC V CP    G +T+  S     R + RW R     WGGW
Sbjct: 74  FWAWWWPLILLSFPFFGRVWCAV-CPFMIYGEITQKLSLWLFPRQLKRWPREQAEKWGGW 132

Query: 102 -PFVAFALTTIYGQM--VSVYQYPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVN 158
             F  F L  ++ ++  +    Y  A LL+L   T GA+I   L+  ++R WC+YLCP+ 
Sbjct: 133 FLFGLFTLIFLWEELWHLENTAYLSACLLLL--ITSGAMIFSALF--ERRFWCRYLCPIG 188

Query: 159 GVFGLLAKLAPLHYKVNEDAWRASYH--------PEH-KIIPINCAPL----VPLRNMKG 205
           G+ GL AKL+    +  +    A+ +        PE  + +  +  PL      L + + 
Sbjct: 189 GMNGLFAKLSMTELRAQQGICSATCNTYQCYKGGPEKGEGMETDGCPLYSHPAQLEDNRD 248

Query: 206 ASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTENNLWESALVLYGLLGIAI 258
              C  C +   HR ++    RPP +E+       N  +E AL+   L GI I
Sbjct: 249 CVLCMTCLKACPHR-SVEFNLRPPGIELWTTHVPRN--YEVALLFLLLGGIYI 298


>slr1529_3 [C] COG0348 Polyferredoxin Syn Synechocystis
          Length = 445

 Score = 73.9 bits (180), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 36/212 (16%)

Query: 50  FWGIWWPFVLVSMVLMGRVWCGVLCP---EGALTEFASKHGRGRAIPRWVR-----WGGW 101
           FW  WWP VL+  + +GR+WC V CP    G +T+  S     R + +W R     WGGW
Sbjct: 62  FWAWWWPLVLLGFIFVGRLWCAV-CPFMIYGEITQKLSLWLWPRKLKKWPRQAAENWGGW 120

Query: 102 PFVAFAL-----TTIYGQMVSVYQYPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCP 156
              A          ++    + Y     +LL+ GG+ V ++I       ++R WC+YLCP
Sbjct: 121 FLFALFALILLWEELWNLENTAYLSAWLLLLITGGAMVCSVIF------EQRFWCRYLCP 174

Query: 157 VNGVFGLLAKLAPLHYKVNEDAWRASYHPEH--------------KIIPINCAPLVPLRN 202
           + G+ G+ AKLA    +  +    A                    +  P+   P   L +
Sbjct: 175 IGGMNGMFAKLAITELRAQQGTCSAECTTYQCYKGGPAKGEGQATEGCPLGTHP-AQLTD 233

Query: 203 MKGASDCHMCGRCSGHRDAIALTFRPPAVEVV 234
            +    C  C +   HR ++    RPPA+ +V
Sbjct: 234 NRDCVLCMTCLKACPHR-SVEFNLRPPAIAIV 264