BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0011.p (91 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0222 Non COG 117 4e-27 PA4581 [KT] COG4650 Sigma54-dependent transcription regulator co... 113 1e-25 STM3522 [KT] COG4650 Sigma54-dependent transcription regulator c... 107 5e-24 rtcR [KT] COG4650 Sigma54-dependent transcription regulator cont... 107 9e-24 ECs4265 [KT] COG4650 Sigma54-dependent transcription regulator c... 106 1e-23 ZrtcR [KT] COG4650 Sigma54-dependent transcription regulator con... 104 4e-23 mll3001 [T] COG2204 Response regulator containing CheY-like rece... 74 1e-13 XF2545 [T] COG2204 Response regulator containing CheY-like recei... 72 3e-13 ZygeV [KT] COG3829 Transcriptional regulator containing PAS, AAA... 70 1e-12 ECs3742 [KT] COG3829 Transcriptional regulator containing PAS, A... 70 1e-12 >RSc0222 Non COG Length = 535 Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 66/79 (83%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLRSA LLFLDEIGELGLDEQAML KAIEEKRFLP G+D EA+S QLIAGT RDL + Sbjct: 277 LLRSADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPFGSDREAQSDFQLIAGTVRDLRQ 336 Query: 61 EVAAGRFREDLFARIKLWS 79 VA GRFREDLFARI LW+ Sbjct: 337 WVAEGRFREDLFARINLWT 355 >PA4581 [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain Pae Pseudomonas aeruginosa Length = 531 Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/79 (73%), Positives = 63/79 (79%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A +LFLDEIGELG DEQAML KAIEEKRF P+G+D E ES QLIAGTHRDL Sbjct: 280 LLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRG 339 Query: 61 EVAAGRFREDLFARIKLWS 79 VA G FREDLFARI LW+ Sbjct: 340 RVAEGLFREDLFARINLWT 358 >STM3522 [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain Sty Salmonella typhimurium LT2 Length = 527 Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 54/79 (68%), Positives = 61/79 (77%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLRSA +LFLDE+GELG DEQAML KAIEEKRF P G+D + S QLIAGT RDL + Sbjct: 277 LLRSADGGMLFLDEVGELGADEQAMLLKAIEEKRFYPFGSDQQVSSDFQLIAGTVRDLRQ 336 Query: 61 EVAAGRFREDLFARIKLWS 79 VA G FREDL+ARI LW+ Sbjct: 337 RVAEGTFREDLYARINLWT 355 >rtcR [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain Eco Escherichia coli K12 Length = 532 Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 54/79 (68%), Positives = 62/79 (78%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLRSA+ +LFLDEIGELG DEQAML KAIEEK F P G+D + S QLIAGT RDL + Sbjct: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 Query: 61 EVAAGRFREDLFARIKLWS 79 VA G+FREDL+ARI LW+ Sbjct: 337 LVAEGKFREDLYARINLWT 355 >ECs4265 [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain Ecs Escherichia coli O157:H7 Length = 532 Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/79 (68%), Positives = 62/79 (78%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLRSA+ +LFLDEIGELG DEQAML KAIEEK F P G+D + S QLIAGT RDL + Sbjct: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 Query: 61 EVAAGRFREDLFARIKLWS 79 VA G+FREDL+ARI LW+ Sbjct: 337 LVADGKFREDLYARINLWT 355 >ZrtcR [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 532 Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 53/79 (67%), Positives = 61/79 (77%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLRSA+ +LFLDEIGELG DEQAML KAIEEK F P G+D + S QLIAGT RDL + Sbjct: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 Query: 61 EVAAGRFREDLFARIKLWS 79 VA G+FREDL+ARI W+ Sbjct: 337 LVADGKFREDLYARINXWT 355 >mll3001 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Mlo Mesorhizobium loti Length = 511 Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 50/80 (62%) Query: 5 AHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAREVAA 64 AH LFLDEIG+L LD Q L +A++E P+G + +LI+ THR+L ++V Sbjct: 237 AHSGTLFLDEIGDLPLDVQVKLLRAVQEGEVDPVGGRSTVKVDIRLISATHRNLLQQVKD 296 Query: 65 GRFREDLFARIKLWSPFIAS 84 G+FREDLF R+ ++ F+ Sbjct: 297 GKFREDLFYRLNVYPIFVPP 316 >XF2545 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Xfa Xylella fastidiosa 9a5c Length = 497 Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 49/77 (63%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 L +SA LFLDE+ EL L Q L +AI+EK PIGA VE ++++ TH+DL+ Sbjct: 255 LFQSAGGGTLFLDEVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSD 314 Query: 61 EVAAGRFREDLFARIKL 77 +A GRFR DL+ RI + Sbjct: 315 LIANGRFRHDLYYRINV 331 >ZygeV [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains EcZ Escherichia coli O157:H7 EDL933 Length = 592 Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 54/77 (70%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 L+++A+ LFLDEIG++ L QA L +AIE + LPIGA + ++I+ T+++LA+ Sbjct: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 Query: 61 EVAAGRFREDLFARIKL 77 +A G+FREDLF R+ + Sbjct: 420 FIAEGKFREDLFYRLNV 436 >ECs3742 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Ecs Escherichia coli O157:H7 Length = 592 Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 54/77 (70%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 L+++A+ LFLDEIG++ L QA L +AIE + LPIGA + ++I+ T+++LA+ Sbjct: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 Query: 61 EVAAGRFREDLFARIKL 77 +A G+FREDLF R+ + Sbjct: 420 FIAEGKFREDLFYRLNV 436