BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0004.p (232 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0489 [TK] COG0745 Response regulators consisting of a CheY-li... 315 5e-86 RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 286 2e-77 PA4885 [TK] COG0745 Response regulators consisting of a CheY-lik... 279 4e-75 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 275 7e-74 ylcA [TK] COG0745 Response regulators consisting of a CheY-like ... 271 9e-73 ZylcA [TK] COG0745 Response regulators consisting of a CheY-like... 271 9e-73 ECs0609 [TK] COG0745 Response regulators consisting of a CheY-li... 271 9e-73 YPO2001 [TK] COG0745 Response regulators consisting of a CheY-li... 264 1e-70 PA1437 [TK] COG0745 Response regulators consisting of a CheY-lik... 254 1e-67 PA2523 [TK] COG0745 Response regulators consisting of a CheY-lik... 247 2e-65 >RSp0489 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 315 bits (807), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 152/220 (69%), Positives = 188/220 (85%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDEPK+GDYL +GLTESGFV D ++G DGL+ A DY LI+LDVMLPGM+GW Sbjct: 1 MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 ++RELRR TPVLFLTARDE+ DR+KGLELGADDYLVKPFA+ EL+ARV T+LRRGP Sbjct: 61 QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120 Query: 121 REVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RE +++E D+ +D ++R+VTRAG+RIDLTAKE+ALLH+L RR GEVLSR I+SQVWD+ Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFE 220 NFDS+TNVVDVA+RRLRAK+D+ FE KL+HT+ GMGYV + Sbjct: 181 NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 178/222 (80%), Gaps = 2/222 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL++GLTE+GFVVD + GVDGLH A DY L++LDVMLP ++GW Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 +++ LR PVLFLTARD V DRVKGLELGADDYLVKPFA+ ELLARVRTLLRRG Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 SR-EVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + +D I+ D+VLD+ RR+ +R+GQRI LT+KEFALL +L RR GEVL R IASQVW Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFE 220 DMNFDSDTNV+DVA+RRLRAK+D+ F KL+ TV GMGYV E Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222 >PA4885 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 182/222 (81%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL++ED+ K+G+YL++GL ESG+ VDW Q G DGL+ A Y L++LDVMLPG++GW Sbjct: 1 MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 I+ LR+ HD PVLFLTARD+++DR++GLELGADDYLVKPF++TELL R+RTLLRRG Sbjct: 61 QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120 Query: 121 REVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RE + ++ D+ LDVLRRKV+R GQ I LT KEFALLH+L+RR GEVLSR IAS+VWDM Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVR 222 NFDSDTNVVDVA++RLRAK+D F KL+HTV G+GYV E R Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEER 222 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 275 bits (702), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 144/225 (64%), Positives = 176/225 (78%), Gaps = 2/225 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDEP+ G YLR+GL E+GF VD G +G A DY L+ILDVMLPG +GW Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 ILR +R T PVLFLTARD VEDRV+GLE GADDYLVKPFA+ ELLARVRTLLRRG Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 SR-EVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + + ++ D+ LD+LRR+V R G+RIDLTAKEFALL +L+RR GEVL + IASQVW Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVRE 223 DMNFDSDTNV++VA+RRLRAK+D+ + ++L+HTV GMGYV E R+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEERD 225 >ylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 227 Score = 271 bits (693), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 138/227 (60%), Positives = 173/227 (76%), Gaps = 2/227 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL +GLTE+GFVVD G++G H A T DY LIILD+MLP +NGW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 DILRELRRTHD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 DI+R LR + P+L LTA +E RVKGLELGADDYLVKPFA+ ELLARVRTLLRRG Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 SREVDL-IEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + ++ + D+++D++ RKVTR+G RI LT+KEF LL +R GEVL R IASQVW Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVREGR 225 DMNFDSDTN +DVAV+RLR K+D FE KL+ TV G+GY+ EV +G+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 >ZylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 227 Score = 271 bits (693), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 138/227 (60%), Positives = 173/227 (76%), Gaps = 2/227 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL +GLTE+GFVVD G++G H A T DY LIILD+MLP +NGW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 DILRELRRTHD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 DI+R LR + P+L LTA +E RVKGLELGADDYLVKPFA+ ELLARVRTLLRRG Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 SREVDL-IEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + ++ + D+++D++ RKVTR+G RI LT+KEF LL +R GEVL R IASQVW Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVREGR 225 DMNFDSDTN +DVAV+RLR K+D FE KL+ TV G+GY+ EV +G+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 >ECs0609 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 227 Score = 271 bits (693), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 138/227 (60%), Positives = 173/227 (76%), Gaps = 2/227 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL +GLTE+GFVVD G++G H A T DY LIILD+MLP +NGW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 DILRELRRTHD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 DI+R LR + P+L LTA +E RVKGLELGADDYLVKPFA+ ELLARVRTLLRRG Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 SREVDL-IEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + ++ + D+++D++ RKVTR+G RI LT+KEF LL +R GEVL R IASQVW Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVREGR 225 DMNFDSDTN +DVAV+RLR K+D FE KL+ TV G+GY+ EV +G+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 >YPO2001 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 230 Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/230 (58%), Positives = 171/230 (74%), Gaps = 2/230 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +LLVEDE K+ Y+ R L+E GF VD TG+DGL+ A DY I+LDVMLPGM+G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 +L LR + TPVL L+AR V++RVKGL GADDYL KPF+ EL+AR++ LLRR PS Sbjct: 61 SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120 Query: 121 REVDL--IEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 VD+ + +D+ LD+L R+VTRAG+R++LTAKEFALL +L R GE+LS+ IA QVW Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVREGREVR 228 DMNFDSD NVV+VA++RLRAK+D + KLLHTV GMGYV E R R+ + Sbjct: 181 DMNFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLETRPDRQTK 230 >PA1437 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/223 (56%), Positives = 166/223 (74%), Gaps = 1/223 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+ DYL RGL+E GF VD G+DG H A +Y +I+LDVMLPG++G+ Sbjct: 1 MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 +LR LR TPV+ LTAR+ VEDRV+GL GADDYL+KPF++ EL+AR++ L RRG + Sbjct: 61 GVLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGN 120 Query: 121 REV-DLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 E + D+ +D+L RKV R R++LTAKE+ALL +L +R GE+LS+ IA VWD Sbjct: 121 HESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWD 180 Query: 180 MNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVR 222 +NFD+DTNVV+VA++RLRAKLD FE KLLHT+ GMGYV E R Sbjct: 181 INFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLENR 223 >PA2523 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 224 Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 123/223 (55%), Positives = 166/223 (74%), Gaps = 1/223 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL++EDE K+ DYL +GLTESG++VD G+DGLH A Y+L+ILDV LPG++GW Sbjct: 1 MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 D+LR LR V+ LT + D+V+GL+LGADD++VKPF + ELLARVR+LLRR Sbjct: 61 DLLRRLRERSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQ 120 Query: 121 REV-DLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 + D++ D+ LD R + R RI+LT KEFALLH+L+RR G+V++R QI S +WD Sbjct: 121 APMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLIWD 180 Query: 180 MNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVFEVR 222 MNFD+D+NVV+VA+ RLRAK+D+GF+ KL+HT+ G+GYV E R Sbjct: 181 MNFDNDSNVVEVAICRLRAKIDDGFDLKLIHTIRGVGYVLEAR 223