BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0003.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene acti...   128   5e-30
SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    99   3e-21
AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    76   2e-14
mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    71   9e-13

>sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Syn
           Synechocystis
          Length = 238

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 92/137 (67%)

Query: 1   VQSGGSAYRLSASRFKEEFHRDTGTLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWL 60
           VQ  G A++LSA     EF +      ++L Y+QA LTQ++Q+A CNR H I+++L RWL
Sbjct: 97  VQVQGEAWKLSAHILLREFEQSPQLQRILLLYTQARLTQVSQSAACNRQHKIEERLARWL 156

Query: 61  LLSLDRLSGNQVTMTQELIANMLGVRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEE 120
           +   D L  +++ +TQE +ANMLGVRR GVT AA  LQ+ G+I Y RG++T+L+   L++
Sbjct: 157 MSVHDCLQVDEIPLTQEFVANMLGVRRSGVTIAANSLQQSGMITYRRGKITLLDYDALKK 216

Query: 121 LCCECYAVVRKETQRLL 137
             CECY +V+ E  RLL
Sbjct: 217 TSCECYQLVQDEYIRLL 233


>SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Sme
           Sinorhizobium meliloti
          Length = 238

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%)

Query: 1   VQSGGSAYRLSASRFKEEFHRDTGTLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWL 60
           +Q  G+AYR+  S F++   R+     +M+R  +A   Q+  TA+ N  H +D++L RWL
Sbjct: 98  MQIEGNAYRMEFSAFRKWMDRNRNFARVMIRCIEAFSIQLTYTAISNALHGVDERLARWL 157

Query: 61  LLSLDRLSGNQVTMTQELIANMLGVRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEE 120
           L+  DR+SG+++ +T E I+ ML VRR  VT +   L+  G I  +RG + + NR  LEE
Sbjct: 158 LMCHDRVSGDEIPLTHEFISLMLAVRRPSVTTSLHVLEGNGFIRSNRGNIIIRNRQALEE 217

Query: 121 LCCECYAVVRKETQRLL 137
              + Y     E +RL+
Sbjct: 218 FARDAYGKPEAEYRRLM 234


>AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 248

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%)

Query: 4   GGSAYRLSASRFKEEFHRDTGTLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLS 63
           GG  + ++    +     DT    L+L Y    L Q+    + N  + + ++L RWLL+ 
Sbjct: 100 GGRGFLITTVEIRRAMDEDTRLRELLLGYINICLLQVGHLVLANGQYGLRERLARWLLMC 159

Query: 64  LDRLSGNQVTMTQELIANMLGVRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEELCC 123
            DRL  + + +T E ++ +LGVRR G+T     L+    I   RG + ++NR  LEE+  
Sbjct: 160 HDRLDTDNLPITHEFLSTVLGVRRPGITNELHVLEGIHAIRARRGNVRIINRSILEEVAT 219

Query: 124 ECYAVVRKETQRLL 137
             Y    KE +RL+
Sbjct: 220 ITYGAPEKEYERLM 233


>mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Mlo
           Mesorhizobium loti
          Length = 243

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%)

Query: 28  LMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLGVRR 87
            +L +   L TQ   TA+ N    ++++L RWLL+  DR+ G  + MT E ++ MLGVRR
Sbjct: 128 FLLHFVNTLHTQTGCTALVNARLKLEERLARWLLMCDDRVPGESLAMTHEFLSIMLGVRR 187

Query: 88  EGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEELCCECYAVVRKETQRLL 137
            GVT A   L+ + +I   RG + + +R  L EL    Y     E  RL+
Sbjct: 188 PGVTVALQLLEGRALIRSRRGEIVIRDRAGLLELANGGYGQAEAEYARLI 237