BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0323.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0311 [K] COG1521 Putative transcriptional regulator, homolog ... 181 1e-45 NMA0357_2 [K] COG1521 Putative transcriptional regulator, homolo... 101 2e-21 NMB2075_2 [K] COG1521 Putative transcriptional regulator, homolo... 100 2e-21 TM0883 [K] COG1521 Putative transcriptional regulator, homolog o... 78 2e-14 CAC3200 [K] COG1521 Putative transcriptional regulator, homolog ... 77 5e-14 XF1795 [K] COG1521 Putative transcriptional regulator, homolog o... 73 6e-13 BS_yacB [K] COG1521 Putative transcriptional regulator, homolog ... 72 1e-12 CC1935 [K] COG1521 Putative transcriptional regulator, homolog o... 71 2e-12 BH0086 [K] COG1521 Putative transcriptional regulator, homolog o... 69 1e-11 PA4279 [K] COG1521 Putative transcriptional regulator, homolog o... 68 2e-11 >RSc0311 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Rso Ralstonia solanacearum Length = 295 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/278 (42%), Positives = 156/278 (56%), Gaps = 27/278 (9%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGR------WRQQGAVARGELQSLAQAW-----AALDR 49 +LLIDAGNTRIKWA + W+ GA +L L + W A Sbjct: 13 LLLIDAGNTRIKWAWTAADVAPPAVAPGGTPWQHAGARPHDQLAELVEDWRDCHAGAGMA 72 Query: 50 PQRICVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFA 109 P + +S VAGPALR++L + +VF G + AS AGLRNGYRDPA+LG DR+ Sbjct: 73 PPDVWISVVAGPALRDALCARIARVF-DGARLRIVASEAAAAGLRNGYRDPAQLGTDRWV 131 Query: 110 AAIGARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQI 169 A+GAR +PD LL+ T GTATT+D+V+ G F GG+ILPG M +L+ NTAQLP+I Sbjct: 132 GAVGARHAWPDTALLLVTAGTATTLDIVAPDGRFAGGLILPGLTLMMRALSRNTAQLPEI 191 Query: 170 D----------EVTPLAGIFADNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLL 219 D + +ADNT +AI GC+ AQ GAI A + +P RC+L Sbjct: 192 DIGYLAARDDAQAPADVPSWADNTQDAIALGCVTAQAGAIAQTWQALQAQYP-GPYRCVL 250 Query: 220 AGGAGLVLAPYLVLGETPLEKVDNLVLIGLHTAMNHAG 257 +GGA LAP+L + P + DNLVL+GL + H G Sbjct: 251 SGGARAALAPHLRM---PFQMHDNLVLLGLQV-LAHTG 284 >NMA0357_2 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor NmA Neisseria meningitidis Z2491 Length = 254 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 22/255 (8%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWA-ALDRPQRICVSNVA 59 LL+D GN+R+KWA + G + G+ +L L WA +D RI V Sbjct: 2 FLLLDGGNSRLKWAWVEN-----GTFATVGSAPYRDLSPLGAEWAEKVDGNVRIVGCAVC 56 Query: 60 GPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYP 119 G + +Q+ L + IEW S+ + G+RN YR P G DR+ A+G+R + Sbjct: 57 GEFKKAQVQEQLARK------IEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRR-FS 109 Query: 120 DEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQ-IDEVTPLAGI 178 +V +CGTA T+D ++ G + GG I+PGF M SLA+ TA L + + P Sbjct: 110 RNACVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYP---- 165 Query: 179 FADNTVEAIVSGCIAAQVGAIEHALAA-RERAHPHTARRCLLAGGAGLVLA---PYLVLG 234 F T A+ SG + A G++ +E+ ++ GG +A P L Sbjct: 166 FPTTTGNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLA 225 Query: 235 ETPLEKVDNLVLIGL 249 E + DNLV+ GL Sbjct: 226 ENTVRVADNLVIHGL 240 >NMB2075_2 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Nme Neisseria meningitidis MC58 Length = 254 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 119/255 (46%), Gaps = 22/255 (8%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWA-ALDRPQRICVSNVA 59 LL+D GN+R+KWA + G + G+ +L L WA D RI V Sbjct: 2 FLLLDGGNSRLKWAWVEN-----GTFATVGSAPYRDLSPLGAEWAEKADGNVRIVGCAVC 56 Query: 60 GPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYP 119 G + +Q+ L + IEW S+ + G+RN YR P G DR+ A+G+R + Sbjct: 57 GEFKKAQVQEQLARK------IEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRR-FS 109 Query: 120 DEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQ-IDEVTPLAGI 178 +V +CGTA T+D ++ G + GG I+PGF M SLA+ TA L + + P Sbjct: 110 RNACVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYP---- 165 Query: 179 FADNTVEAIVSGCIAAQVGAIEHALAA-RERAHPHTARRCLLAGGAGLVLA---PYLVLG 234 F T A+ SG + A G++ +E+ ++ GG +A P L Sbjct: 166 FPTTTGNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLA 225 Query: 235 ETPLEKVDNLVLIGL 249 E + DNLV+ GL Sbjct: 226 ENTVRVADNLVIYGL 240 >TM0883 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Tma Thermotoga maritima Length = 246 Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 13/203 (6%) Query: 2 LLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQR----ICVSN 57 LL+D GNT +++ D RWR V + E + + L R I V++ Sbjct: 3 LLVDVGNTHSVFSITEDGKTFR-RWRLSTGVFQTEDELFSHLHPLLGDAMREIKGIGVAS 61 Query: 58 VAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARAL 117 V P +++ Q+ F P+ W + + ++ ++P+ +G DR A + Sbjct: 62 VV-PTQNTVIERFSQKYFHISPI--WVKA--KNGCVKWNVKNPSEVGADRVANVVAFVKE 116 Query: 118 YPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLAG 177 Y +++ GTATT+D+V G +EGG ILPGF M SL TA+LP + EV P Sbjct: 117 YGKNGIII-DMGTATTVDLV-VNGSYEGGAILPGFFMMVHSLFRGTAKLPLV-EVKPADF 173 Query: 178 IFADNTVEAIVSGCIAAQVGAIE 200 + +T E I G + V A+E Sbjct: 174 VVGKDTEENIRLGVVNGSVYALE 196 >CAC3200 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Cac Clostridium acetobutylicum Length = 273 Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 14/208 (6%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQR-------I 53 +L++D GNT I + +D + WR V R + Q + + + Sbjct: 13 ILVLDVGNTNIVLGIYND-TKLTAEWRLSTDVLRSADEYGIQVMNLFQQDKLDPTLVEGV 71 Query: 54 CVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIG 113 +S+V P + SL+ ++++ F P++ + G+ Y +P +G DR A+ Sbjct: 72 IISSVV-PNIMYSLEHMIRKYFKINPLV---VGPGIKTGINIKYDNPKEVGADRIVNAVA 127 Query: 114 ARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVT 173 A +Y L++ GTATT V G + GG I PG + +L A+LP+++ + Sbjct: 128 AHEIY-KRSLIIIDFGTATTFCAVRENGDYLGGAICPGIKVSSEALFEKAAKLPRVELIK 186 Query: 174 PLAGIFADNTVEAIVSGCIAAQVGAIEH 201 P I NT+ +I SG + +G + + Sbjct: 187 PAYAI-CKNTISSIQSGIVYGYIGQVRY 213 >XF1795 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Xfa Xylella fastidiosa 9a5c Length = 242 Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 107/233 (45%), Gaps = 23/233 (9%) Query: 3 LIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQRICVSNVAGPA 62 L D GN+R K A REG + A A L R + +++VA PA Sbjct: 5 LFDLGNSRFKCA-----SLREGVIGPVTVLPYLTETMDAFALQELPRGRVAYLASVAAPA 59 Query: 63 LRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYPDEE 122 + + ++L+ F ++ A+ AG+R Y P R G DRF A +G+ Y + Sbjct: 60 ITTHVLEVLKIHFEQ---VQVAATVAACAGVRIAYAHPERFGVDRFLALLGS---YGEGN 113 Query: 123 LLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLAG----I 178 +LV GTA TID+++A G GG I M +L QLP L+G Sbjct: 114 VLVVGVGTALTIDLLAANGCHLGGRISASPTLMRQALHARAEQLP-------LSGGNYLE 166 Query: 179 FADNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPYL 231 FA++T +A+VSGC A V IE +L + + R LL GG L P+L Sbjct: 167 FAEDTEDALVSGCNGAAVALIERSLYEAHQRLDQSV-RLLLHGGGVASLLPWL 218 >BS_yacB [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Bsu Bacillus subtilis Length = 233 Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGE------LQSL-AQAWAALDRPQRI 53 +L+ID GNT V D + E WR + + + E L+SL + ++ I Sbjct: 2 LLVIDVGNTNTVLGVYHD-GKLEYHWRIETSRHKTEDEFGMILRSLFDHSGLMFEQIDGI 60 Query: 54 CVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIG 113 +S+V P + +L+++ + F P I + GL Y +P +G DR A+ Sbjct: 61 IISSVV-PPIMFALERMCTKYFHIEPQI---VGPGMKTGLNIKYDNPKEVGADRIVNAVA 116 Query: 114 ARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVT 173 A LY + L+V GTATT + + GG I PG +L A+LP+I E+T Sbjct: 117 AIHLYGNP-LIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRI-EIT 174 Query: 174 PLAGIFADNTVEAIVSGCIAAQVGAIE 200 I NTV A+ SG + VG +E Sbjct: 175 RPDNIIGKNTVSAMQSGILFGYVGQVE 201 >CC1935 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Ccr Caulobacter vibrioides Length = 261 Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 24/227 (10%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVAR---------GELQSL-AQAWAALDRP 50 +L I+ GNT +A+ D +WR R +L S+ + A+D Sbjct: 3 LLAIEQGNTNTMFAI-HDGASWVAQWRSATESTRTADEYVVWLSQLLSMQGLGFRAIDA- 60 Query: 51 QRICVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAA 110 + +S+V P +L+ L ++ F P++ + L G+ P+ G DR Sbjct: 61 --VIISSVV-PQSIFNLRNLSRRYFNVEPLVIGENAKL---GIDVRIEKPSEAGADRLVN 114 Query: 111 AIGARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQID 170 AIGA +YP L+V GTATT D+V+A G FEGG+I PG +L A+LP+I Sbjct: 115 AIGAAMVYPGP-LVVIDSGTATTFDIVAADGAFEGGIIAPGINLSMQALHEAAAKLPRIA 173 Query: 171 EVTPLAG-IFADNTVEAIVSGCIAAQVGAIEHALAAR---ERAHPHT 213 P I +TV A+ SG + IE L AR ER P T Sbjct: 174 IQRPAGNRIVGTDTVSAMQSGVFWGYISLIE-GLVARIKAERGEPMT 219 >BH0086 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Bha Bacillus halodurans Length = 254 Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 15/229 (6%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRP-------QRI 53 +L+ID GNT V D WR + + E + + D I Sbjct: 2 ILVIDVGNTNTVLGVYQDETLVH-HWRLATSRQKTEDEYAMTVRSLFDHAGLQFQDIDGI 60 Query: 54 CVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIG 113 +S+V P + SL+Q+ ++ F P+I + GL Y +P +G DR A+ Sbjct: 61 VISSVV-PPMMFSLEQMCKKYFHVTPMI---IGPGIKTGLNIKYDNPKEVGADRIVNAVA 116 Query: 114 ARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVT 173 A LY +V GTATT +++ + + GG+I PG +L ++LP+I+ Sbjct: 117 AIELY-GYPAIVVDFGTATTYCLINEKKQYAGGVIAPGIMISTEALYHRASKLPRIEIAK 175 Query: 174 PLAGIFADNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGG 222 P + NT++++ SG V ++ + R +A + + + GG Sbjct: 176 P-KQVVGTNTIDSMQSGIFYGYVSQVD-GVVKRMKAQAESEPKVIATGG 222 >PA4279 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Pae Pseudomonas aeruginosa Length = 248 Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 95/198 (47%), Gaps = 16/198 (8%) Query: 1 MLLIDAGNTRIKWAVPSDHPQREGRWRQ-QGAVARGELQSLAQAWAALDRPQRIC-VSNV 58 +L +D GN+ IKW V EG R G +A + + Q + P R C + +V Sbjct: 2 ILELDCGNSLIKWRVI------EGAARSVAGGLAESDDALVEQLTSQQALPVRACRLVSV 55 Query: 59 AGPALRESLQQLLQQVFGSGPVIEWFASTLER-AGLRNGYRDPARLGCDRFAAAIGARAL 117 L L+Q+F PV AS+ ++ AG+RNGY D RLG DR+ A + A L Sbjct: 56 RSEQETSQLVARLEQLF---PVSALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAAHHL 112 Query: 118 YPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVT--PL 175 + LV GTA T D+V+A GV GG I PG M + L +T ++ D L Sbjct: 113 -AKKACLVIDLGTAVTSDLVAADGVHLGGYICPGMTLMRSQLRTHTRRIRYDDAEARRAL 171 Query: 176 AGIF-ADNTVEAIVSGCI 192 A + T EA+ GC+ Sbjct: 172 ASLQPGQATAEAVERGCL 189