BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0300.p (410 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0085 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 535 e-152 cca [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase E... 447 e-125 NMB1241 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 445 e-124 Zcca [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase ... 444 e-124 ECs3939 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 444 e-124 NMA1410 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 444 e-124 STM3204 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 441 e-123 PA0584 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymeras... 440 e-123 YPO0650 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 439 e-123 VC2446 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymeras... 436 e-122 >RSc0085 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Rso Ralstonia solanacearum Length = 429 Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust. Identities = 272/406 (66%), Positives = 315/406 (77%), Gaps = 7/406 (1%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 + Y VGGA+RD LLGLPV+DRD+VVVGATPE + A GFR VGKDFPVFLHP+TQ EYAL Sbjct: 20 LDVYAVGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPVFLHPRTQAEYAL 79 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQD--EDGALV----DPYHGRA 114 ARTERKTA GYKGF+ + APDVTLEDDL RRDLTINA+AQ EDGALV DPY G+A Sbjct: 80 ARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVIDPYGGQA 139 Query: 115 DIAARVFRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPER 174 D+A+R FRHVS+AF+EDPVRILRVARFAARFA+F VAPET ALMQRM E GEVDALVPER Sbjct: 140 DLASRTFRHVSEAFVEDPVRILRVARFAARFAEFHVAPETRALMQRMAEAGEVDALVPER 199 Query: 175 VWQELSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVV 234 VWQEL+RGL+E +PSR+F VLR CGAL R+LPELD LWGVPQ +HPE+DTGVH M+VV Sbjct: 200 VWQELARGLLEARPSRLFAVLRDCGALVRLLPELDRLWGVPQRADYHPEVDTGVHTMMVV 259 Query: 235 DWAAAQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRD 294 D AAA LP+RFAAL+HDLGKGTTP ++ PRH GHEAR + E +C RL+VP +CRD Sbjct: 260 DTAAAMDTPLPVRFAALVHDLGKGTTPADILPRHVGHEARGLPMIEDICRRLRVPTDCRD 319 Query: 295 LALMTAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQP 354 LA+M AREHGN+ R+ LV+ RCDA RKP+RF L A E D RGR G EQ+ Sbjct: 320 LAIMVAREHGNIHRSDGFDATALVRLLERCDALRKPERFRQALLACEADARGRLGFEQRD 379 Query: 355 FPQAAYLEGALQAAQQIDAGAIAQAQS-QPQRIPEAIQAARTEQVA 399 +PQ L ALQAA IDAGA+A+ + P I +A+ AR E VA Sbjct: 380 YPQPVRLLRALQAAASIDAGAVAKRYADNPAHIKQAVHVARIEAVA 425 >cca [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Eco Escherichia coli K12 Length = 412 Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/406 (54%), Positives = 280/406 (68%), Gaps = 2/406 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 MK Y VGGAVRD LLGLPVKDRD VVVG+TP+++L G++ VG+DFPVFLHPQT EEYAL Sbjct: 1 MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF +AAPDVTLEDDL RRDLTINA+AQD++G ++DPY+G D+ R+ Sbjct: 61 ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFAD--FTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF EDP+R+LRVARFAAR+A F +A ET ALM+ M GE++ L PERVW+E Sbjct: 121 LRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 L + P F+VLR CGAL+ + PE+DAL+GVP P KWHPEIDTG+H ++ + AA Sbjct: 181 TESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGIHTLMTLSMAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 + +RFA L HDLGKG TPPE+WPRHHGH +L EQ+C RL+VP E RDLA + Sbjct: 241 MLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 A H + + P T+VK F DA+RKPQR + +E D RGRTG E +PQ Sbjct: 301 VAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRGRTGFESADYPQG 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQ 404 +L A + AQ + A+ +A + I E + R VA++ Q Sbjct: 361 RWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKEQ 406 >NMB1241 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Nme Neisseria meningitidis MC58 Length = 417 Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/402 (55%), Positives = 283/402 (70%), Gaps = 4/402 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 M+TY VGGAVRD LLGLPVKDRD VVVGA + +LA GF+PVGKDFPVFLHP+T EEYAL Sbjct: 1 MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERKTA GY GF+FHA DVTLE DL RRDLTINA+AQD DG ++DP+ G+ D+AA + Sbjct: 61 ARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQRDLAAGI 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPERVWQELS 180 RHVS AF EDPVRILR ARFAAR+ F +A ET LM++MVE GE DALV ERVWQE + Sbjct: 121 LRHVSPAFAEDPVRILRTARFAARY-KFEIAEETIKLMRQMVENGEADALVAERVWQEFA 179 Query: 181 RGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240 +GLME+ P +M EVLR CGAL+ +LPE++AL+GVPQ +HPEID+G+H ++ + AA Sbjct: 180 KGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTLMTLQRAADM 239 Query: 241 GFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALMTA 300 G +LP R+AAL+HDLGK TP ++ PRHHGH+ +V RL+ P C +LA + Sbjct: 240 GLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQRLRAPKHCAELAELVC 299 Query: 301 REHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQAAY 360 R H + +++ T++ + DAFR+P+RF L D +GR E P+PQ A+ Sbjct: 300 RWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQTALNVCIADTQGRLNREHTPYPQRAH 359 Query: 361 LEGALQAAQQIDAGAIA---QAQSQPQRIPEAIQAARTEQVA 399 L+AA Q D+G IA +AQ + I E I AR Q+A Sbjct: 360 WLALLEAANQADSGKIAAECRAQGKAHLIAEQIDRARLAQIA 401 >Zcca [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase EcZ Escherichia coli O157:H7 EDL933 Length = 412 Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/406 (53%), Positives = 278/406 (68%), Gaps = 2/406 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 MK Y VGGAVRD LLGLPVKDRD VVVG+TP+++L G++ VG+DFPVFLHPQT EEYAL Sbjct: 1 MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF +AAPDVTLEDDL RRDLTINA+AQD++G ++DPY+G D+ R+ Sbjct: 61 ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFAD--FTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF EDP+R+LRVARFAAR+A F +A ET LM+ M GE++ L PERVW+E Sbjct: 121 LRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 L + P F+VLR CGAL+ + PE+DAL+GVP P +WHPEIDTG+H ++ + AA Sbjct: 181 TENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGIHTLMTLSMAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 + +RF L HDLGKG TPPE+WPRHHGH +L EQ+C RL+VP E RDLA + Sbjct: 241 MLSPQVDVRFTTLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 A H + + P T+VK F DA+RKPQR + +E D RGRTG E +PQ Sbjct: 301 VAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRGRTGFESADYPQG 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQ 404 +L A + AQ + A+ +A + I E + R VA++ Q Sbjct: 361 RWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKEQ 406 >ECs3939 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Ecs Escherichia coli O157:H7 Length = 412 Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/406 (53%), Positives = 278/406 (68%), Gaps = 2/406 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 MK Y VGGAVRD LLGLPVKDRD VVVG+TP+++L G++ VG+DFPVFLHPQT EEYAL Sbjct: 1 MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF +AAPDVTLEDDL RRDLTINA+AQD++G ++DPY+G D+ R+ Sbjct: 61 ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFAD--FTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF EDP+R+LRVARFAAR+A F +A ET LM+ M GE++ L PERVW+E Sbjct: 121 LRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 L + P F+VLR CGAL+ + PE+DAL+GVP P +WHPEIDTG+H ++ + AA Sbjct: 181 TENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGIHTLMTLSMAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 + +RF L HDLGKG TPPE+WPRHHGH +L EQ+C RL+VP E RDLA + Sbjct: 241 MLSPQVDVRFTTLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 A H + + P T+VK F DA+RKPQR + +E D RGRTG E +PQ Sbjct: 301 VAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRGRTGFESADYPQG 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQ 404 +L A + AQ + A+ +A + I E + R VA++ Q Sbjct: 361 RWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKEQ 406 >NMA1410 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase NmA Neisseria meningitidis Z2491 Length = 417 Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/402 (55%), Positives = 283/402 (70%), Gaps = 4/402 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 M+TY VGGAVRD LLGLPVKDRD VVVGA + +LA GF+PVGKDFPVFLHP+T EEYAL Sbjct: 1 MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERKTA GY GF+FHA DVTLE DL RRDLTINA+AQD DG ++DP+ G+ D+AA + Sbjct: 61 ARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQRDLAAGI 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPERVWQELS 180 RHVS AF EDPVRILR ARFAAR+ F +A ET LM++MVE GE DALV ERVWQE + Sbjct: 121 LRHVSPAFAEDPVRILRTARFAARY-KFEIAEETIKLMRQMVENGEADALVAERVWQEFA 179 Query: 181 RGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240 +GLME+ P +M EVLR CGAL+ +LPE++AL+GVPQ +HPEID+G+H ++ + AA Sbjct: 180 KGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTLMTLQRAADM 239 Query: 241 GFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALMTA 300 G +LP R+AAL+HDLGK TP ++ PRHHGH+ +V RL+ P C +LA + Sbjct: 240 GLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVRKVNQRLRAPKHCAELAELVC 299 Query: 301 REHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQAAY 360 R H + +++ T++ + DAFR+P+RF L D +GR E P+PQ A+ Sbjct: 300 RWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQTALNVCIADTQGRLNREHTPYPQRAH 359 Query: 361 LEGALQAAQQIDAGAIA---QAQSQPQRIPEAIQAARTEQVA 399 L+AA Q D+G IA ++Q + I E I AR Q+A Sbjct: 360 WLALLEAANQADSGKIAAECRSQGKAHLIAEQIDRARLAQIA 401 >STM3204 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Sty Salmonella typhimurium LT2 Length = 413 Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/403 (54%), Positives = 276/403 (68%), Gaps = 2/403 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 MK Y VGGAVRD LLGLPVKD+D VVVGATP+++L G++ VG+DFPVFLHPQT EEYAL Sbjct: 1 MKIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF +AAPDVTLE DL RRDLTINA+A+D+ G ++DPYHGR D+ AR+ Sbjct: 61 ARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDAGQIIDPYHGRRDLEARL 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFA--DFTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF EDP+R+LRVARFAAR+A F +A ET ALM+ M GE++ L PERVW+E Sbjct: 121 LRHVSPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTPERVWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 L + P F+VLR CGAL+ + PE+DAL+GVP P KWHPEIDTGVH ++ + AA Sbjct: 181 TENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGVHTLMTLSMAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 L +RFA L HDLGKG TP +WPRHHGH +L EQ+C RL+VP + RDLA + Sbjct: 241 MLSPQLDVRFATLCHDLGKGLTPKNLWPRHHGHGPAGVKLVEQLCQRLRVPNDLRDLAKL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 A H + ++P T+VK F DA+RKPQR + +E D RGRTG E +PQ Sbjct: 301 VAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGRTGFEASDYPQG 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAF 401 +L A Q AQ + + +A + I E + R VA + Sbjct: 361 RWLREAWQVAQAVPTKEVVEAGFKGIEIREELTKRRIAAVANW 403 >PA0584 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Pae Pseudomonas aeruginosa Length = 410 Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/408 (54%), Positives = 288/408 (70%), Gaps = 2/408 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 M+ Y VGGAVRD LLG PV D D VVVGA+ +++LA G+RPVG DFPVFLHPQ+ EEYAL Sbjct: 1 MQIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF FHA+P+VTLE+DL RRDLTINA+A+DE G ++DPY G+AD+ AR+ Sbjct: 61 ARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLEARL 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFAD--FTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF EDP+R+LRVARFAAR+A F VA ET ALM+++ E GE+ AL PER W+E Sbjct: 121 LRHVSPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQALTPERSWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 +SR LME P +VL CGAL ++PE++AL+GVPQP HPEIDTGVHV+ V+ A Sbjct: 181 ISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGVHVLSVLQQCA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 L +R+A L+HDLGKG T WPRH HEAR L + V R +VP EC++LA + Sbjct: 241 RHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRFRVPRECQELARL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 H + RA E+RP+TL++ D +R+PQRF + + A+E D RGR GLEQ+ +PQA Sbjct: 301 VGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRLGLEQRDYPQA 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQHG 406 AYL GA QAA+ + + + + + EA++ AR + A+ + G Sbjct: 361 AYLLGAAQAARAVSVKPLVEKGLKGAELGEALKRARLAALKAYKEERG 408 >YPO0650 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Ype Yersinia pestis Length = 412 Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/403 (55%), Positives = 277/403 (68%), Gaps = 2/403 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 M Y VGGAVRD LL LPV ++D VVVGATPEQLL LG++ VGKDFPVFLHP + EEYAL Sbjct: 1 MNIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHPVSHEEYAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERK+ GY GF +AAPDVTLEDDL RRDLT+NAIA+ DG +DPYHG+ D+ RV Sbjct: 61 ARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENRV 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARFA--DFTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVSDAF EDP+R+LRVARFAARFA FT+APET +LM M + GE+ AL PERVW+E Sbjct: 121 LRHVSDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPERVWKE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 + L Q P F+VLR CGAL + PE++ L+GVP PEKWHPEIDTG+H ++ + AA Sbjct: 181 TEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIHTLMTLAIAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 + IRFAAL HDLGKG TP E WP HHGH +L EQ+C RL++P RDLA + Sbjct: 241 QLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPAGVKLVEQLCQRLRIPNPVRDLAKL 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 A H + ++RP+TL+K F+ D +RKP+R M+ +E D RGRTG E P+PQ Sbjct: 301 VAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPERLEQMIMTSEADARGRTGFENNPYPQG 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAF 401 YL A Q A + + + Q I + +Q R + +A + Sbjct: 361 DYLRAAFQIANGVSIQEVVASGLQGLAIRDELQRRRQQALAEW 403 >VC2446 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Vch Vibrio cholerae Length = 403 Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/403 (54%), Positives = 272/403 (67%), Gaps = 2/403 (0%) Query: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPQTQEEYAL 60 M+ Y VGGAVRD LL LPV DRD VVVG++P+ +LA GF+ VGKDFPVFLHP ++EE+AL Sbjct: 1 MQIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHAL 60 Query: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGALVDPYHGRADIAARV 120 ARTERKT+ GY GFA H APDVTLE+DL RRDLTINA+AQD G L+DPY G+ D+AA+V Sbjct: 61 ARTERKTSVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQRDLAAKV 120 Query: 121 FRHVSDAFIEDPVRILRVARFAARF--ADFTVAPETNALMQRMVEQGEVDALVPERVWQE 178 RHVS AF+EDP+R+LRVARFAA+ FTVA ET LM ++ + GE+ L ERVWQE Sbjct: 121 LRHVSPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLTAERVWQE 180 Query: 179 LSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAA 238 + L P +VLR CGAL +LPE+D L+GVPQPEKWHPEIDTG+H ++V AA Sbjct: 181 WHKSLSAHHPEMFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGIHTLMVAKQAA 240 Query: 239 AQGFALPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALM 298 +L +RFAA +HDLGKG TPP WPRH H + E +C R++VP E RDLAL Sbjct: 241 QLSDSLLVRFAAQVHDLGKGVTPPSEWPRHKLHCHTGLNIIESLCERIRVPNEFRDLALA 300 Query: 299 TAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQA 358 +H N+ RA E++P T +K D +RKP+R +L E DHRGR GLE +P+PQ Sbjct: 301 VCAQHSNIHRADELKPTTKLKVLGLLDVWRKPERLEQVLLCCEADHRGRLGLESEPYPQR 360 Query: 359 AYLEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAF 401 A QAA + A+ Q + I E + R + A Sbjct: 361 EIFLRAYQAALGVAVQAVIADGFQGKHIKEELDKRRVSAIEAL 403