BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0295.p (1199 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 1060 0.0 mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 813 0.0 CC3176_1 Non COG 759 0.0 RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum 426 e-118 mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti 362 3e-99 CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides 336 2e-91 MTH1852 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, al... 117 2e-25 AF1489 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alp... 108 7e-23 PAB0718 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, al... 102 5e-21 PH1138 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alp... 95 1e-18 >RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Rso Ralstonia solanacearum Length = 762 Score = 1060 bits (2740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/720 (69%), Positives = 579/720 (80%), Gaps = 3/720 (0%) Query: 1 MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60 MNAPL R L+ VSLDDKYTLERGR++++G QALVRLPMLQ++ D+ AGLNTAGFI+ Sbjct: 1 MNAPLNDALRRALETVSLDDKYTLERGRIYISGTQALVRLPMLQQERDRIAGLNTAGFIS 60 Query: 61 GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120 GYRGSPLGA+DQ KA+K+L I F G+NEDLAATSVWG+QQVNL+ A++DGVF Sbjct: 61 GYRGSPLGALDQALWKAQKHLSGHNIVFQAGLNEDLAATSVWGSQQVNLYPSARFDGVFG 120 Query: 121 LWYGKGPGVDRCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 +WYGKGPGVDR DVFKH N AG+S HGGVLV+AGDDHA KSST AHQSEH+ KA GIPV Sbjct: 121 MWYGKGPGVDRTIDVFKHANSAGSSAHGGVLVLAGDDHACKSSTLAHQSEHVFKAAGIPV 180 Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240 LYPS+VQEYLDYGLHGWAMSRY+GLWVAMKCVTD+VES SV +DP R +I LP DF +P Sbjct: 181 LYPSNVQEYLDYGLHGWAMSRYSGLWVAMKCVTDVVESSASVDVDPHRAEIVLPEDFVMP 240 Query: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 GLNIR PD L QEAR+++YKWYA LAY RANKL+R++ DSP+AR GI+TAGK+YLD Sbjct: 241 AGGLNIRWPDPPLVQEARLLDYKWYAGLAYVRANKLDRVVLDSPQARFGIMTAGKAYLDV 300 Query: 301 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 RQAL DLG+D++ R IGIRLYKVG WPLEA G R FA+GL EILVVEEKRQILEYQLK Sbjct: 301 RQALVDLGLDDETCRRIGIRLYKVGCVWPLEAHGARAFAEGLQEILVVEEKRQILEYQLK 360 Query: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF 420 EELYN+RDDVRPRV GKFD+ G GNWLLPA YEL+PA IARAIATR+ ++ Sbjct: 361 EELYNYRDDVRPRVYGKFDERDNAGGEWSVPMGNWLLPAHYELSPALIARAIATRLEKFE 420 Query: 421 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAG 480 V ++ AR+A ++AKE L +KP +R P FCSGCPHNTST +PEGSR LAG Sbjct: 421 LPSDVRARIEARIAIIDAKEKAL---AKPRITAERKPWFCSGCPHNTSTNVPEGSRALAG 477 Query: 481 IGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASV 540 IGCHYM WMDR T F+ MGGEGV W+GQ PF+ +KHVFANLGDGTY+HSGLLA+RAS+ Sbjct: 478 IGCHYMTVWMDRSTNTFSQMGGEGVAWIGQMPFSGDKHVFANLGDGTYYHSGLLAIRASI 537 Query: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQ 600 AAKVNITYK+LYNDAVAMTGGQ DGPL I+ Q+ AE I++VTDEP+KY + Sbjct: 538 AAKVNITYKLLYNDAVAMTGGQPVDGPLSVPQIAAQVHAEGTSRIVIVTDEPEKYNAAIK 597 Query: 601 WAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 EGVT+ HR LDA+QRELRE PG S +IYDQTCA+EKRRRRKR DPA+RA IN+A Sbjct: 598 LPEGVTVHHRDRLDAIQRELREVPGTSVLIYDQTCATEKRRRRKRGTMADPARRAFINDA 657 Query: 661 VCEGCGDCSAQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 VCEGCGDCS +SNCLSVEPLETE G KR+INQSSCNKD+SCVNGFCPSFVT EG Q++KP Sbjct: 658 VCEGCGDCSVKSNCLSVEPLETELGTKRKINQSSCNKDFSCVNGFCPSFVTAEGAQVRKP 717 >mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Mlo Mesorhizobium loti Length = 724 Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/745 (54%), Positives = 524/745 (70%), Gaps = 23/745 (3%) Query: 11 LLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAV 70 + L DV+LDDK+ L + R+F++G QA++R+ ++QR+ D+RAGLNTAGF++GYRGSPLG + Sbjct: 1 MTLHDVALDDKFDLGKERIFLSGAQAVIRMLLMQRERDRRAGLNTAGFVSGYRGSPLGGL 60 Query: 71 DQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVD 130 D KA+K L I F PG+NE+LAAT+ WG+QQ L +DGVFS+WYGKGPGVD Sbjct: 61 DMQLWKAKKQLAGADIVFQPGLNEELAATACWGSQQTELLGEGTHDGVFSVWYGKGPGVD 120 Query: 131 RCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYL 190 R GDVF+H N+AG+S+HGGVL + GDDH A+SST AH +E + +P+L P+ VQE + Sbjct: 121 RSGDVFRHANLAGSSKHGGVLALMGDDHMAESSTNAHATEFLFVDTMVPILNPAGVQEII 180 Query: 191 DYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPD 250 DYGL+G+AMSR+ G W A+KCV D +ES SV ER+ I +P +F++PP GLNIR Sbjct: 181 DYGLYGFAMSRFAGTWAAIKCVKDNIESTASVDASLERLNIVVP-EFDMPPGGLNIRHEI 239 Query: 251 TVLGQEARMINYKWYAALAYARANKLNRIIWDSPR-ARIGIITAGKSYLDTRQALEDLGI 309 +LGQE R+ YK AA A+ AN LNRI++ R ++GIIT GKSYLD RQALED+GI Sbjct: 240 DMLGQEERLHEYKRAAASAFIHANGLNRIVYSGGRNPKLGIITLGKSYLDVRQALEDIGI 299 Query: 310 DEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDD 369 DE AA IGIRL+KVG WPL+ + + EFA+GLD I+VVEEKR ++E QL+E LY Sbjct: 300 DEAAANRIGIRLFKVGCPWPLDLQHIAEFARGLDTIVVVEEKRSLIEVQLRESLYGTAS- 358 Query: 370 VRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQV 429 +P +VGK D+ G+WL PA L+P +IA A+ RI + P E+ + Sbjct: 359 -QPVIVGKKDE-----------RGDWLFPAKGALDPNEIAIALGERIVKTIG--PSEE-I 403 Query: 430 RARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTW 489 ARV L +A L ++ R P FCSGCPHN+STK+P+GS AGIGCH+M W Sbjct: 404 SARVGKLRQFQAMLADATDI---GSRTPFFCSGCPHNSSTKVPDGSIAAAGIGCHFMALW 460 Query: 490 MDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYK 549 MDR T FT MGGEG WVGQAPF+ H+F NLGDGTY HSG LA+R +++++ NITYK Sbjct: 461 MDRNTLGFTAMGGEGAQWVGQAPFSKRGHIFQNLGDGTYNHSGTLAIRFALSSEANITYK 520 Query: 550 ILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVTIRH 609 ILYNDAVAMTGGQ +G L MI+RQ+ AE V I +VTDEPDKY + G TI H Sbjct: 521 ILYNDAVAMTGGQPHEGGLTVDMIARQVRAEGVDRIAIVTDEPDKYAGKADFPAGATIHH 580 Query: 610 RSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCGDCS 669 R +LD VQRELR+ GVS ++YDQTCA+EKRRRRKR +PDP KR INE +CEGCGDC Sbjct: 581 RDDLDLVQRELRDVKGVSILLYDQTCAAEKRRRRKRGTFPDPDKRVFINELICEGCGDCG 640 Query: 670 AQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARAQADVGP 729 QSNC+S++P+ETEFGRKR+I+QSSCNKD+SCVNGFCPSFVTV G +++K P Sbjct: 641 VQSNCVSIQPVETEFGRKRRIDQSSCNKDFSCVNGFCPSFVTVHGAKIRKAEGLAGKTDP 700 Query: 730 ALPSLPEPV-LPGLAQPYGILVTGV 753 L +P P P A+ + ++ GV Sbjct: 701 -LDGVPTPAEFPLGAEGWAAIIDGV 724 >CC3176_1 Non COG Length = 715 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/735 (52%), Positives = 489/735 (66%), Gaps = 26/735 (3%) Query: 24 LERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKYLEA 83 LE GR F+TG+QAL+R+ + +++ D++AGLNT G+++GYRGSPLG +DQ A + +K L A Sbjct: 2 LEDGRAFITGVQALLRVLLDRKRLDRKAGLNTGGYLSGYRGSPLGGLDQQAARIKKLLTA 61 Query: 84 KQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHTNMAG 143 + F G+NEDLAAT+VWG+QQ NLF GA YDGVF +WYGK PGVDR GDVFKH N AG Sbjct: 62 HDVVFQEGLNEDLAATAVWGSQQANLFPGALYDGVFGMWYGKAPGVDRTGDVFKHANFAG 121 Query: 144 TSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYT 203 T GGVL +AGDDH KSST QSE + +PVL P+ VQE LDYGL G +MSR++ Sbjct: 122 TFPTGGVLAVAGDDHGCKSSTLPSQSEFAFQDFEMPVLSPADVQEVLDYGLLGISMSRFS 181 Query: 204 GLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLGQEARMINYK 263 GLW M + D ++SG+++ + +R QI +P +F PP GL IRQ D + +E RM +K Sbjct: 182 GLWTGMIALADTMDSGVTIDVSLDRHQIVVP-EFAFPPGGLGIRQKDQPMEKERRMRLHK 240 Query: 264 WYAALAYARANKLNRIIWDSP-----RARIGIITAGKSYLDTRQALEDLGIDEQAARDIG 318 AALA+ARAN ++R++ + +AR+GI+ G++Y D +A +G+ Q A D+G Sbjct: 241 IPAALAFARANNIDRVVLGASHVKVGKARLGIVCQGQAYKDVLEAFTAMGMTLQEAADLG 300 Query: 319 IRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKF 378 + +YKVGM WPLE G+R FA GL+ ++V+E KR ++E Q + LY+ RPRV+GK Sbjct: 301 VSIYKVGMPWPLEPLGLRAFAAGLETLMVIEHKRALIEPQARAALYDLPAQARPRVIGKT 360 Query: 379 DDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLEA 438 D+ G LL L+ A+IA AI R+ P + AYL Sbjct: 361 DE-----------KGGPLLSELGSLSVAEIALAIYDRL-------PQGPHMERAQAYLNR 402 Query: 439 KEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRETKLFT 498 A + D+ R P FCSGCPHNTSTKLPEGSR LAGIGCHYM + D T L T Sbjct: 403 VSAAGVAAVSLAADQARKPFFCSGCPHNTSTKLPEGSRALAGIGCHYMAGFNDPMTDLNT 462 Query: 499 HMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAM 558 HMGGEG+TWVG APFT EKHVF NLGDGTY HSG LA+R +VAA NITYK+LYNDAVAM Sbjct: 463 HMGGEGLTWVGAAPFTSEKHVFQNLGDGTYNHSGSLAIRGAVAAGTNITYKLLYNDAVAM 522 Query: 559 TGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELDAVQR 618 TGGQ + PA I+RQLAAE V+ ++V DE ++Y A GV I RS+L VQ Sbjct: 523 TGGQRAESGFTPAQITRQLAAEGVKKTVIVVDELERYQGVNDLAPGVEIFPRSDLMRVQE 582 Query: 619 ELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCGDCSAQSNCLSVE 678 LRE PG + ++YDQTCA+EKRRRRKR + P +R IN VCEGCGDCS +SNC+SVE Sbjct: 583 MLRETPGTTVLLYDQTCATEKRRRRKRGSMPKATQRVFINPLVCEGCGDCSVKSNCVSVE 642 Query: 679 PLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARAQADVGPALPSLPEPV 738 PL TEFGRKR+INQSSCN+DYSCV GFCPSF+T+EG + + + A + S P P Sbjct: 643 PLATEFGRKRKINQSSCNQDYSCVEGFCPSFITLEGAESAQSKKTPAAL--TAESTPLPE 700 Query: 739 LPGLAQPYGILVTGV 753 L IL TGV Sbjct: 701 FEPLTGVRKILFTGV 715 >RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum Length = 425 Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust. Identities = 235/438 (53%), Positives = 296/438 (67%), Gaps = 18/438 (4%) Query: 767 MAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTA 826 MAAH+EG+ +VLDM+GLAQKGG V+SHV++ E IH+TR+ G ADLVIGCD IV+A Sbjct: 1 MAAHIEGKGVTVLDMAGLAQKGGAVLSHVQIGERPDTIHATRIAMGEADLVIGCDAIVSA 60 Query: 827 SRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGR 886 S + LS++ G+T A VNS PTA F++NP+W+FP +S+E +I A G D + DA Sbjct: 61 SDEVLSKVQFGQTRAIVNSAATPTADFIKNPNWRFPGSSAEADIRAAVG-DACAFEDASA 119 Query: 887 IATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHD 946 +A L+GDAI TN +LG+AWQKGW+PL+ ALLRAIELN + V+ NK AF WGR AHD Sbjct: 120 LAVRLLGDAIYTNPLVLGFAWQKGWIPLTYDALLRAIELNGVSVDKNKTAFEWGRHLAHD 179 Query: 947 VAFVLAAAGRNGMS-AQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDFVEQVRAR 1005 VLA AG + A+VI TLD L+ RRV LT YQNAAYA ++R VE+VR Sbjct: 180 REAVLALAGAAPRAKAEVIALP--ATLDTLIARRVDLLTAYQNAAYADAFRVVVERVRTA 237 Query: 1006 ESTLGEAGRGLKLSRAVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEG----DYKL 1061 E+ + AG+ L L+ AVA L +LMAYKDEYEVARL+ DPAF K+ F+G DY+L Sbjct: 238 EAAVAGAGQPLTLTEAVARNLSRLMAYKDEYEVARLYTDPAFLDKLRAQFDGEPGRDYQL 297 Query: 1062 RFHLAPPLLAKRDDKGHLRKQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERAL 1121 F LAPPL AKRD+KGHL KQ FG M +F +LA+LR LRGTALD F TEERR ERAL Sbjct: 298 NFWLAPPLWAKRDEKGHLVKQRFGPNTMRIFKLLAKLRGLRGTALDVFGKTEERRTERAL 357 Query: 1122 ITDYRATLSRLLDRLTPENLEQVTAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQ 1181 I +YRA + L+ L+ + L +AR+PE+IRG+GHVKE +L AA + LLAQ Sbjct: 358 IGEYRALVDELVSGLSTQKLALAIDLARLPEDIRGFGHVKEANLAAARVRWGKLLAQW-- 415 Query: 1182 ATAQAQPQSPPGGGQQAA 1199 PG Q+AA Sbjct: 416 --------RDPGAAQRAA 425 >mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti Length = 435 Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 196/440 (44%), Positives = 266/440 (60%), Gaps = 10/440 (2%) Query: 754 GGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGM 813 GGTGV+T+G ++ MAAH+E + C ++DM+GLAQKGG V +HVR+A IH+ RV G Sbjct: 1 GGTGVVTVGAVLGMAAHLEDKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGK 60 Query: 814 ADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARA 873 ADLV+GCD++V+ ++ L+ + EG T N+ ++ F R+ D+ P + I A Sbjct: 61 ADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRAA 120 Query: 874 CGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFN 933 G D DA R ATAL G+++ NMFMLG+A+Q G +PLS A+ RAIELN V N Sbjct: 121 AGDDKAHFFDATRTATALFGNSLGANMFMLGFAFQHGGLPLSAEAVERAIELNGEAVAMN 180 Query: 934 KQAFAWGRAAAHDVAFV---LAAAGRNGMSAQVIEFKRTPTLDELVERRVAFLTDYQNAA 990 AF WGR AAH FV +A GR G +A V + TLDE++ RRVAFLT YQNAA Sbjct: 181 IAAFRWGRRAAHQPDFVRGLVAQPGRAGETAPVAQ-----TLDEIIARRVAFLTAYQNAA 235 Query: 991 YARSYRDFVEQVRARESTLGEAGRGLKLSRAVASYLFKLMAYKDEYEVARLHADPAFRAK 1050 Y + Y D + +RA E+ ++ A A LFKLMA KDEYEVARL+ D +F A+ Sbjct: 236 YGKRYADRLTLLRAAETRAVPGSTA--VTEAAARNLFKLMAIKDEYEVARLYTDGSFAAE 293 Query: 1051 IAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQAFGSWMMPVFGVLARLRFLRGTALDPFA 1110 + F+ KL FHLAPP++ +R + G RK +FG WMM F +LA L+ LRGTA D F Sbjct: 294 LGKQFQSYEKLEFHLAPPIMGRRGNDGTPRKSSFGPWMMKGFRLLAALKGLRGTAFDLFG 353 Query: 1111 YTEERRQERALITDYRATLSRLLDRLTPENLEQVTAVARIPEEIRGYGHVKERHLKAAME 1170 YT ERR ER L+ Y L + + L P + A+ +P IRGYGHV++ + A Sbjct: 354 YTAERRMERQLLAQYEGDLELVANSLAPGKADAAVALVSVPALIRGYGHVRQASAEKAAG 413 Query: 1171 KQAALLAQLGQATAQAQPQS 1190 ++ LL +L Q + Q+ Sbjct: 414 ERQRLLERLSSTPTQTELQA 433 >CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides Length = 419 Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 197/431 (45%), Positives = 256/431 (59%), Gaps = 21/431 (4%) Query: 754 GGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGM 813 GGTGV T+ I+AMAAH++GRA SV+DM+GLAQKGG V SHV++ + I RV Sbjct: 1 GGTGVTTVASIMAMAAHIDGRAGSVVDMTGLAQKGGSVFSHVKIGKTEETIVGGRVPAAS 60 Query: 814 ADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARA 873 AD++I CD++V AS + LS + RT A NS PTA FV + D +F + + + A Sbjct: 61 ADVLIACDLLVAASPEGLSLYAKDRTRAFGNSDFAPTADFVTSRDVRFDSGAMARRVKGA 120 Query: 874 CGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFN 933 A R+A GDAI NM M+G+AWQ+G +PLS A+ RAI+LN + E N Sbjct: 121 T--KTFDACPAQRLAETEFGDAIYANMIMVGFAWQRGVIPLSSRAVYRAIKLNGVDAEAN 178 Query: 934 KQAFAWGRAAAHDVAFVLAAAGRNGMSAQVIEFKRTPT-----LDELVERRVAFLTDYQN 988 QAF GR AHD S ++ TPT LD L+ R+A LT YQN Sbjct: 179 LQAFELGRRVAHDP------------STLTVKEDTTPTPETMPLDALIAHRIAQLTAYQN 226 Query: 989 AAYARSYRDFVEQVRARESTLGEAGRGLKLSRAVASYLFKLMAYKDEYEVARLHADPAFR 1048 AAYA+ Y D V +VRA E+ + L L+RA A L+KLMAYKDEYEVARL+ D F Sbjct: 227 AAYAQRYADKVAKVRAAETAVSGEDGALPLTRAAAVNLYKLMAYKDEYEVARLYTDGRFA 286 Query: 1049 AKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQAFGSWMMPV-FGVLARLRFLRGTALD 1107 A++AG F+G K + LAPPLLA + G +K AFG WM+ + F ++A+++ LRGTALD Sbjct: 287 AELAGTFKGG-KAKVWLAPPLLAPKGPDGKPKKIAFGGWMLDLAFPMMAKMKGLRGTALD 345 Query: 1108 PFAYTEERRQERALITDYRATLSRLLDRLTPENLEQVTAVARIPEEIRGYGHVKERHLKA 1167 F TEERR ER LI Y L RL L E+L +A +P+ IRG+GHVKE + Sbjct: 346 IFGKTEERRMERGLIASYETGLDRLAAGLKAESLPLAVKIAEVPQAIRGFGHVKEASVVT 405 Query: 1168 AMEKQAALLAQ 1178 A +A L Q Sbjct: 406 AKAAEAKLWTQ 416 >MTH1852 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Mth Methanothermobacter thermautotrophicus Length = 618 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 140/565 (24%), Positives = 232/565 (41%), Gaps = 102/565 (18%) Query: 25 ERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAV-DQTAEKARKYLEA 83 E ++F+ G +A VR + +G+ A G S +G V A++A Y E Sbjct: 11 EGDKLFLLGNEATVRAAI-------ESGVGVASTYPGTPSSEIGNVLSGIAKRAGMYFEF 63 Query: 84 KQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHTNMAG 143 +NE +A + + A GV S + K G++ D F T G Sbjct: 64 S-------VNEKVA---------LEVAAAAAASGVRSFTFMKHVGLNVASDSFMSTAYTG 107 Query: 144 TSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYT 203 G++V+ DD + SS + H + +P+L PS QE L++ H + +S Sbjct: 108 V--RAGMVVLTADDPSMFSSQNEQDNRHYARLACLPLLEPSDPQEVLEFMNHAFELSEDY 165 Query: 204 GLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTV--LGQEARMIN 261 GL V ++ T + S M R +++ + P +G + P+ + AR+++ Sbjct: 166 GLPVLLRTTTRV--SHM-------RGVVEVGSRMREPSEGFFRKDPERFVPVPATARVMH 216 Query: 262 YKWYAALAYARA----NKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDI 317 K + R ++LNR+ + +G++ +G ++ ALE LG++ Sbjct: 217 RKLVDKMKELRIRADESELNRVFNGGSDSELGVVASGGAFNYVYDALESLGLE------- 269 Query: 318 GIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGK 377 + + K+G T+P A V EF GL +LVVEE I+E ++ + R D+ V GK Sbjct: 270 -LPVLKLGFTYPFPAGLVEEFLSGLKRVLVVEEVDPIMEREVLAVAGSARLDL--DVHGK 326 Query: 378 FDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLE 437 D T LP YE N + +AI+ G P Sbjct: 327 LDGT---------------LPEIYEYNEDILRKAISG-----LTGAP------------- 353 Query: 438 AKEATLNISSKPDPDKDRIPHFCSGCPHNT---STKLPEGSRGLAG--------IGCHYM 486 + E ++ P +R P C GCPH + + L+G IGC+ + Sbjct: 354 SVERECDVPDIP----ERPPSLCPGCPHRAVYYAVRRAADELELSGDEIIFPTDIGCYTL 409 Query: 487 -VTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVN 545 + MG T G + T ++ + + +GD T+FH+G+ + +V K Sbjct: 410 GIEPPYSAADYLLSMGSSIGTSCGFSAATTQR-IVSFIGDSTFFHAGIPPLINAVHNKQR 468 Query: 546 ITYKILYNDAVAMTGGQEFDG-PLD 569 +L N AMTGGQ G P+D Sbjct: 469 FVLVVLDNRTTAMTGGQPHPGLPVD 493 >AF1489 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Afu Archaeoglobus fulgidus Length = 623 Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 170/715 (23%), Positives = 271/715 (37%), Gaps = 119/715 (16%) Query: 12 LLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVD 71 +L+DV D E +VF+ G +A+ R + AG++ Y G+P + Sbjct: 1 MLNDVVRD----AEGEKVFLLGNEAIARGAI-------EAGIDV---FAAYPGTPSSEIA 46 Query: 72 QTAEKARKYLEAKQ-IKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVD 130 T A + L K NE +A + GA G ++ K GV+ Sbjct: 47 DTLSDACRLLRGKMDFYMEYSANEKVA---------FEVAVGASLAGKRAMATMKHVGVN 97 Query: 131 RCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYL 190 D + A GG +++ DD + SS + KA +PV+ PSSVQE Sbjct: 98 VAADPL--FSFAYVGARGGFVLVTADDPSMHSSQNEQDNRWYGKAAKLPVVEPSSVQEAK 155 Query: 191 DYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMID--PERVQIQLPADFELPPDGLNIRQ 248 DY + +S GL + ++ T L + V + PE+ ++ ++E P + Sbjct: 156 DYAKLCFDLSEKFGLPMILRSYTRLSHASGVVELGKIPEKEFSRV--EWERHP------E 207 Query: 249 PDTVLGQEARMINYKWYAALA----YARANKLNRIIWDSPRARIGIITAGKSYLDTRQAL 304 D VL AR + L Y ++++N + D +GII G SY T++AL Sbjct: 208 TDVVLPAHARKLKPILLEKLEKIERYFNSSEMNWV--DEGDGDVGIIACGLSYAYTKEAL 265 Query: 305 EDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELY 364 E+L ++ + + K+ PL + F + +++VVEE +E + Sbjct: 266 ENL--------NLNLPVLKLSSMHPLPERLIENFVSQMKKVIVVEEVDPFVELHV----- 312 Query: 365 NWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQ----IARAIATRISRYF 420 R +G + G+ +G +P YE N + IA+A+ + SR + Sbjct: 313 --------RAMGLAEVYGKMNG---------YMPMNYEYNVGRVETGIAKALGIKPSRDY 355 Query: 421 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPE------G 474 G E Q +++K P R P C GCPH+ S G Sbjct: 356 EGIVAESQ---------------KLAAKAPP---RPPVLCPGCPHSASFYAIRRVVDELG 397 Query: 475 SRGL-AGIGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGL 533 L + IGC+ + E T G V + A +GD T+ H+G+ Sbjct: 398 DAALPSDIGCYTLGINKPLEGVDITICMGASVGVSNGLAHVLNNKIIATIGDSTFIHAGI 457 Query: 534 LAVRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPD 593 + +V + IL N MTG Q G A + VR +V Sbjct: 458 PPLINAVYNHADFVLVILDNSTTGMTGHQPHPG---TGFRGCGEAGKAVRIEDIVRG--- 511 Query: 594 KYPVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAK 653 G ++ E V + ++ V R GV+ +I Q CA R R+R Sbjct: 512 ---CGVEFVEVVNPYNVRKMVDVLRRALNHDGVAVVIARQPCAILWSRARRREG------ 562 Query: 654 RAVINEAVCEGCGDCSAQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPS 708 ++ V E C C N + L + G K I+QS C C CP+ Sbjct: 563 -KIVTYKVTEDCTLCMECVNTFACPALIFD-GEKVSIDQSLCVGCAVCAK-ICPN 614 >PAB0718 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Pab Pyrococcus abyssi Length = 613 Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 150/665 (22%), Positives = 253/665 (38%), Gaps = 99/665 (14%) Query: 58 FITGYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDG 117 F TGY G+P V +T + + + A+ + P NE +A G Y G Sbjct: 22 FATGYPGTPSTEVIETIARLKPEVFAE---WAP--NEKVALEEA---------AGVSYAG 67 Query: 118 VFSLWYGKGPGVDRCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACG 177 + SL K G++ D ++A + GG++++ DD +S + K Sbjct: 68 LRSLVTMKCVGLNVAADPL--MSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYYGKIAI 125 Query: 178 IPVLYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADF 237 +PVL P QE D + + +S + V + T + + V + E V++ F Sbjct: 126 LPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG-EFVELNRKPVF 184 Query: 238 ELPPDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRII--WDSPRARIGIITAGK 295 + + ++ G R +KW + N + W ++GII G Sbjct: 185 K---KDIERYVRASMEGNRRR---HKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGA 238 Query: 296 SYLDTRQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQIL 355 Y ++ L +G D ++ K+ PL + V +F + +++++V+EE L Sbjct: 239 PYNYVKEILPSIGED--------FKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFL 290 Query: 356 EYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATR 415 E ++K + + + + + GK R G LLP EL P + AI Sbjct: 291 EEEIK--VVAYEEGLSVPIYGK-----------RTG----LLPLEGELTPRLVKNAILKF 333 Query: 416 ISRYFAGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTK-LPEG 474 + + + Q+V LEA++ R P C GCPH S + L + Sbjct: 334 LGKEAEEVSIPQEV------LEAEKLA----------PKRPPGMCPGCPHRGSYRALLDA 377 Query: 475 SRGLA----------GIGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLG 524 R L IGC+ + E + G ++ K + A +G Sbjct: 378 LRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISLANGQSVVMNKKIVATIG 437 Query: 525 DGTYFHSGLLAVRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRP 584 D T+FH+G+ + +V +++ IL N AMTG Q G +E R Sbjct: 438 DSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPG---------TGGSETGRK 488 Query: 585 IIVVTDEPDKYPVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRK 644 + E +G ++ + V +E + G + +I + C RR + Sbjct: 489 FREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVIIAKRECVIPVIRRGE 548 Query: 645 RNAYPDPAKRAVINEAVCEGCGDCSAQSNC--LSVEPLETEFGRKRQINQSSCNKDYSCV 702 P +I E C GC C S C L +P ET RK +I++ C C Sbjct: 549 TREPP------IIIEEKCTGCKACILLSGCQALIYDP-ET---RKVKIDELICTGCGIC- 597 Query: 703 NGFCP 707 N CP Sbjct: 598 NQLCP 602 >PH1138 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Pho Pyrococcus horikoshii Length = 618 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 150/671 (22%), Positives = 247/671 (36%), Gaps = 111/671 (16%) Query: 58 FITGYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDG 117 F TGY G+P V +T + + + A+ + P NE +A GA Y G Sbjct: 27 FATGYPGTPSTEVIETIARLKPEVFAE---WAP--NEKVALEEA---------AGASYAG 72 Query: 118 VFSLWYGKGPGVDRCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACG 177 + SL K G++ D ++A + GG++V+ DD +S + K Sbjct: 73 IRSLVTMKCVGLNVAADPL--MSLAYSGVEGGLVVLVADDPGPHTSQTEQDDRYYGKISL 130 Query: 178 IPVLYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMI----DPERVQIQL 233 +PVL P QE D + + +S + + + T + + V + D R+ + Sbjct: 131 LPVLEPYDPQEAHDLIKYAYELSEKYKVPIIFRTTTRVNHTTADVEVGEFKDLNRIP-KF 189 Query: 234 PADFELPPDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRI--IWDSPRARIGII 291 D E +R E +KW + N + W +IGII Sbjct: 190 KKDIER-----YVRA-----SMEGNRKRHKWLNETLKKIEEEFNNLDYNWIEGDGKIGII 239 Query: 292 TAGKSYLDTRQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEK 351 G Y ++ L + D ++ K+ PL + V F + +++ LV+EE Sbjct: 240 VEGAPYNYVKEVLPSIEGD--------FKILKLSTPHPLPRKIVINFLKSVEKALVIEEG 291 Query: 352 RQILEYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARA 411 LE ++K + + + +R + GK R G+ LP EL P + A Sbjct: 292 APFLEEEIK--VVAYEEGLRVPIYGK-----------RTGY----LPLEGELTPRLVKNA 334 Query: 412 IATRISRYFAGHPVEQQVRARVAYLEAKEATL--NISSKPDPDKDRIPHFCSGCPHNTST 469 I + + E +E +L + R P C GCPH S Sbjct: 335 ILKLLGK------------------EGEEVSLPKEVEEAERLAPKRPPVMCPGCPHRGSY 376 Query: 470 K-LPEGSRGLA----------GIGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKH 518 + L + R L IGC+ + E + G ++ K Sbjct: 377 RALLDALRELGYGKFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISLANGQSVVMGKK 436 Query: 519 VFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLA 578 + A +GD T+FH+G+ + +V +++ IL N AMTG Q G Sbjct: 437 IVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPG---------TGG 487 Query: 579 AENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASE 638 +E R + E +G ++ + V +E + G + +I + C Sbjct: 488 SETGRKFREIDIEALVKGIGVKYVKTVDPYDLKATKEAIKEAMKVKGPAVIIARRECVIP 547 Query: 639 KRRRRKRNAYPDPAKRAVINEAVCEGCGDCSAQSNC--LSVEPLETEFGRKRQINQSSCN 696 RR + P ++ E C GC C S C L +P ET RK +I++ C Sbjct: 548 VIRRGETREPP------IVIEDKCTGCKACILLSGCPALIYDP-ET---RKVRIDELICT 597 Query: 697 KDYSCVNGFCP 707 C N CP Sbjct: 598 GCGIC-NQLCP 607