BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0263.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4855 [K] COG5499 Predicted transcription regulator containing...   136   1e-32
mll1856 Non COG                                                       117   9e-27
SMc00823 [K] COG5499 Predicted transcription regulator containin...    96   2e-20

>all4855 [K] COG5499 Predicted transcription regulator containing HTH domain
           Nos Nostoc sp. PCC 7120
          Length = 126

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 85/120 (70%)

Query: 1   MEIKPIKTDADYRATLAEIDTLMSARLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60
           +E +PI+ +ADYRA L EI  L  + LNTPE DRL+VL TLV+AYE KH+ I  PDP+EA
Sbjct: 2   LEPRPIRNEADYRAALDEIARLFDSELNTPESDRLEVLTTLVEAYEQKHYQIAAPDPIEA 61

Query: 61  IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKPIKL 120
           I + +E  GL+  DLEP IG    +  IL+R++ LTL +I +LHQ LGIPAE LI+P  L
Sbjct: 62  ILYYLESRGLSVNDLEPVIGSKTEISNILHRRQALTLEIIRRLHQQLGIPAEVLIQPYSL 121


>mll1856 Non COG
          Length = 133

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 8/125 (6%)

Query: 3   IKPIKTDADYRATLAEIDTLMSARLNTPE-----GDRLDVLVTLVQAYEAKHFPIDLPDP 57
           I+PIKT+ADY   +AEI        N PE     GDR DVL TL++AYE KH+PI+ PDP
Sbjct: 5   IRPIKTEADYDWAIAEITKYFE---NEPEVGSLDGDRFDVLATLIEAYEDKHYPIEAPDP 61

Query: 58  VEAIKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKP 117
           VEAI+  M+   L+ + L   IG S R  E+LNRKR LTL M++KL++   IPAE L++P
Sbjct: 62  VEAIQSHMQLFNLSRKALAEVIGSSPRATEVLNRKRALTLDMVFKLNKEWNIPAEVLVQP 121

Query: 118 IKLAT 122
             LA 
Sbjct: 122 YHLAN 126


>SMc00823 [K] COG5499 Predicted transcription regulator containing HTH domain
           Sme Sinorhizobium meliloti
          Length = 131

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)

Query: 3   IKPIKTDADYRATLAEIDTLMSA--RLNTPEGDRLDVLVTLVQAYEAKHFPIDLPDPVEA 60
           I+ I+ D D    + E+           T E DR D+L TL++AYE +H PI+ P+PVE 
Sbjct: 4   IRAIRNDDDLAWAIHEVSKYFDQPPETGTEEADRFDILSTLIEAYENEHHPIEAPEPVEL 63

Query: 61  IKFRMEQAGLTARDLEPFIGRSNRVYEILNRKRPLTLAMIWKLHQGLGIPAESLIKPIKL 120
           IK  ME  G T  DL    G  +R  EIL+++R LT+ MI +LH+  GIP + L++P  L
Sbjct: 64  IKAHMEMFGRTQADLAALFGSRSRASEILSKRRALTVDMIRRLHKEWGIPTDCLVEPYHL 123