BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0247.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me... 139 7e-33 AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 136 3e-32 SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 133 3e-31 AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 133 3e-31 AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium ... 129 7e-30 RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia sol... 128 1e-29 SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 122 8e-28 AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 119 6e-27 SMa0246 [K] COG2186 Transcriptional regulators Sme Sinorhizobium... 119 7e-27 SMa1442 [K] COG2186 Transcriptional regulators Sme Sinorhizobium... 108 9e-24 >BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 270 Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 11/225 (4%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L + +ARQ+ + I G F GSKLP+E L+ ++GVSR VVREA+++LK +G+VE R GS Sbjct: 40 LPEEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGS 99 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 GVFV +++ K RI V +++ Q++EL AIE AA R+ EDL+ I+ AL Sbjct: 100 GVFVIDESNQKAFRIQPLVVEEAQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQIKRAL 159 Query: 130 AQIGVDVAAGGD--GVAADVAFHRALAQATRNPYFI---KTLEFLSQY-LEAATAVTRGN 183 IG++ A D G D AFH A+ AT NP+FI K LE+ +++ + A TR N Sbjct: 160 --IGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVIRQARTNTRSN 217 Query: 184 EARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 +D V++EH+AI EAI GD A AA+ H+ NA +R+ Sbjct: 218 ---LKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM 259 >AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L +A ++ I+ G +LPTE VLA+ FGVSR+V+REAIA+L++EG VE RQG Sbjct: 14 LPGRIAAEIAREINDSQLGPGDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGV 73 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 G FVT+ +RI+ + ++ PE +++LR ++E + A AA E L+ + A+ Sbjct: 74 GAFVTDPRQRLSIRIEQSTLNDPENFRDLMQLRMSLEIDAAGLAALHHKPEHLEKFDKAI 133 Query: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAA--TAVTRGNEARY 187 + + DGV AD+ FHR +AQAT N YF+ L F++Q + +A TA +R A Y Sbjct: 134 YGMRNAIEWSKDGVEADLDFHRTMAQATGNEYFLIFLGFIAQRISSAINTAFSR---AVY 190 Query: 188 EDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 + EH + +AI + + AR+A + H+ AARRL+ Sbjct: 191 GEILEITINEHVVLRDAIASRNVALARDAMRQHILGAARRLN 232 >SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 243 Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 13/229 (5%) Query: 9 ALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQG 68 + +D V ++L +I G F G++LPTE LA++FGVSR VVREA+ARL+ +G+VE R+G Sbjct: 18 SYADQVYGRILHDILNGIFQPGARLPTENELAERFGVSRPVVREALARLRVDGLVEARRG 77 Query: 69 SGVFVTEQAGIK-PLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 SG +V + P D ++S L+ ELR +E + AA AA+RR+ + L AI Sbjct: 78 SGTYVLSRPSQDLPNLADLEDISR---FLRYQELRFYVEGQAAALAAERRTEKQLAAILE 134 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLE----FLSQYLEAATAVTR-G 182 A +V G +D FH A+ + T N +F K LE L+ ++ + A+TR G Sbjct: 135 AHEAFAHEVGRGAFLPESDRRFHLAICEGTGNEFFAKALEGPEVSLTSFMNVSLALTRSG 194 Query: 183 NEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQG 231 ++AR +R+V EH IVEAIR D + AR A +TH+ NA RR++ G Sbjct: 195 SQAR----ARRVIAEHAEIVEAIRTKDAVWARVAMETHIINARRRMTDG 239 >AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 10/220 (4%) Query: 14 VARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSGVFV 73 V+ +L I G + G +LP+EA + Q+FGVSRTVVREA+A L+ +G+VEPRQG+GVFV Sbjct: 21 VSEELRSQIAKGRYKTGDRLPSEAQMTQEFGVSRTVVREAVASLRSDGLVEPRQGAGVFV 80 Query: 74 TEQAGI--KPL-RIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAALA 130 E A + +P +D VSS +++++ELR A+E + A AA RRS + I A Sbjct: 81 LEPAPVERRPFHNVDLARVSS---LIEMLELRTAVEGDAAGLAAIRRSPAQEEKIIEAFD 137 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT-RGNEARYE- 188 A G AD AFH A+A+AT NP F + L+ L + AV G E Sbjct: 138 AFRASAARGMPTAEADFAFHIAVAEATNNPRFSEFLQVLGPTVIPRRAVAENGAETVLSP 197 Query: 189 -DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR 227 D SR V EHEAI+ AI+ G+E AAR+A ++H+ ++ R Sbjct: 198 ADLSRLV-GEHEAILIAIQDGNEDAARSAMRSHLKSSQTR 236 >AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 237 Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 17/230 (7%) Query: 15 ARQLLENIDA----GAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSG 70 A+Q+++N+ A G G ++PTE L + +GVSRTVVREAIA L+ G V P QG G Sbjct: 13 AQQIIDNLSAEIRSGKLKNGDQVPTEPQLERTYGVSRTVVREAIADLRSAGYVVPIQGKG 72 Query: 71 VFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAALA 130 VFV+ + +++ +EV + L+++E R A E E AA AA RR+A+ AI AA Sbjct: 73 VFVSNASEWTGVKLTQSEVGTIAETLEMLEFRLATEGEAAAIAAYRRTAQQEAAISAAHR 132 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGN-----EA 185 ++ + AG V AD FH A+A AT N ++ LE L Q+ + ++ RG E Sbjct: 133 KMARAIDAGETTVDADYEFHSAIAIATNNRFY---LEALRQF--GSRSIPRGQFPTLPET 187 Query: 186 RYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR---LSQGQ 232 ++ R+V+ EHEAI+ AI D AAR A + HM + RR LS+ Q Sbjct: 188 GNANYLRKVQAEHEAILRAIVEQDPEAARKAMREHMLASQRRYRLLSEAQ 237 >RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia solanacearum Length = 255 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Q+L++ V + + I +G+ G KLPTE+ L GVSRTVVREAI+RL+ + ++E R Sbjct: 15 QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGMLGVSRTVVREAISRLQAKALIETRH 74 Query: 68 GSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 G G FV E +++ S+ + +L ++ELR A+E E A AA+R + EDL + Sbjct: 75 GIGSFVLEPRAETAIQLGA--ASTLQDILAMLELRVALETECAGLAAQRATPEDLTGLRN 132 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYL--EAATAVTRGNEA 185 AL D A+G D A+D+ FH A+A ATRN +F+ L+ L + L + A T+ Sbjct: 133 ALDAFEQDQASGSDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVGYL 192 Query: 186 RYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 + V EH +I EAI D AAR A + H+ N+ RL Sbjct: 193 NTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERL 235 >SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 249 Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 2/214 (0%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 LS+ VA + E + G G KLPTE+ +++ FGVSRTVVREAIA L +G+VEPRQG+ Sbjct: 11 LSERVANAIREQVLKGEIQPGQKLPTESRMSEFFGVSRTVVREAIATLAADGLVEPRQGA 70 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 GVFV + + I + L ++E+R +E E A AA RR++ I+ A Sbjct: 71 GVFVMDHPTLAFGSISLDVGNKISHALNVIEVRMGLEIESAGLAALRRNSAQEAQIQEAF 130 Query: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLS-QYLEAATAVTRGNEARYE 188 + + G +D AFHRA+A AT NPY+++ L+ L + + A G E+ Sbjct: 131 FEFDRLLERGEATGKSDFAFHRAIAAATNNPYYVEVLDALGLRAIPCDVASPWGTESVLS 190 Query: 189 -DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHM 221 ++ ++ EH AI++AI D AAR A + H+ Sbjct: 191 REYQESLQREHLAILKAISESDPEAARAAMRAHL 224 >AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 242 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 11/225 (4%) Query: 9 ALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQG 68 +L+ ++ L ++ G F G +LP+E+ L +++ VSRTVVREAIA L+ +G+VE R+G Sbjct: 11 SLAAKISSALRRDLAEGVFRPGDRLPSESELTREYSVSRTVVREAIAILRADGLVEARKG 70 Query: 69 SGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAA 128 +GVF E K + + V +V++++ELR E E A AA RRSA ++AI A Sbjct: 71 AGVFAIEAKPAKEVPFNDLAVGRISSVIELLELRTVFEVESAGLAASRRSAVQVEAIVDA 130 Query: 129 LAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGN----- 183 ++G + AG AD FH A+AQAT+N F + L+ + + + RG Sbjct: 131 HRRVGDCLGAGLPTRDADFEFHLAIAQATQNRRFPEFLQLIRSGI-----IPRGELQGAA 185 Query: 184 -EARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR 227 +R +D++ ++EEH IV+AI GD AAR H+ + R Sbjct: 186 PGSRPKDYNLHLQEEHAKIVDAIIEGDADAARQYMAAHLRGSLER 230 >SMa0246 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 233 Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 7 AQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPR 66 ++ L +A ++ I G G KLPTE +LA FGVSR+VVREAIA+L++EG+VE R Sbjct: 9 SEHLPARIAAKIGREITEGRIAPGEKLPTEHLLATTFGVSRSVVREAIAQLRNEGLVETR 68 Query: 67 QGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIE 126 QG G F TE + LRI+ ++++ + + +LR +E E A AA + +DL I+ Sbjct: 69 QGVGAFATEIERRQSLRIEQGDLANRGSFRDLFQLRIPLEVEAARLAAIHHTPQDLGKID 128 Query: 127 AALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEAR 186 AL Q+ G+ AD+AFHRA+A AT N YF+ + F+++ + + A Sbjct: 129 EALQQMTGAEKWTEQGIVADLAFHRAIAAATHNEYFLLFIGFIAERI-SLAINAARAAAI 187 Query: 187 YEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 E+ EH +I + A D + A A + H+ AA RL Sbjct: 188 LEEIVEVTIAEHVSIRNGVSARDPVQAEEAMRHHLNGAAARL 229 >SMa1442 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 254 Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 109/222 (49%), Gaps = 3/222 (1%) Query: 9 ALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQG 68 +LS VA + I+AG + G KLPTE L +FG SRTVVREAIA L+ +G+VE RQG Sbjct: 16 SLSSQVADAIKAQIEAGYYAPGDKLPTEPALIDKFGFSRTVVREAIAALRADGLVESRQG 75 Query: 69 SGVFVTEQAGIKP-LRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 SGVFV P L++ E +++ +ELR IE E A AA R S I+A Sbjct: 76 SGVFVIGPRQSDPGLKLFTGETDKISDIIEELELRIGIEVEAAGLAAARSSPAQEAEIQA 135 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYL--EAATAVTRGNEA 185 + + VA G AD FH A+A AT N F LE + + + G Sbjct: 136 QVERFAQLVAEGKPTDEADFQFHMAIATATNNTRFRTFLEHVGRRMIPRVKFRTVMGGVD 195 Query: 186 RYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR 227 + + EH I EAI A D AR A + H+ +R Sbjct: 196 PLPNRDEPILLEHREIAEAILARDPDRAREAMRRHLVTGIKR 237