BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0142.p         (299 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3157 [QR] COG0500 SAM-dependent methyltransferases Rso Ralsto...   458   e-129
FN0778 [QR] COG0500 SAM-dependent methyltransferases Fnu Fusobac...   128   2e-29
CAC0151 [QR] COG0500 SAM-dependent methyltransferases Cac Clostr...   123   6e-28

>RSc3157 [QR] COG0500 SAM-dependent methyltransferases Rso Ralstonia
           solanacearum
          Length = 278

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/273 (81%), Positives = 241/273 (88%), Gaps = 2/273 (0%)

Query: 25  QAHEIRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPLLQEVLDQHPDVSL 84
           + HEIRP QSIELLKELHILTRDGK+NQDSRRKLKQVYHL+QFIEPLL +V      VSL
Sbjct: 4   KTHEIRPNQSIELLKELHILTRDGKMNQDSRRKLKQVYHLFQFIEPLLDDVQKAKGHVSL 63

Query: 85  VDHGAGKSYLGFILYDLFFKGLPG--APHIYGIETREELVRKSEELASRLGFGGMSFLNL 142
           VDHGAGKSYLGFILYDLFFK  PG  A HIYGIETRE LV KS ELA+RLGF GMSFLN+
Sbjct: 64  VDHGAGKSYLGFILYDLFFKEQPGDGASHIYGIETREALVAKSTELAARLGFKGMSFLNV 123

Query: 143 SVADSISSPSLPEKIDVVTALHACDTATDDAIHFALAKEARFIVLVPCCQAEVASVLNRN 202
           SVA+SI+S  LP  +DVVTALHAC+TATDDAI FAL K A++IVLVPCCQAEVA VL RN
Sbjct: 124 SVAESITSERLPPAVDVVTALHACNTATDDAIRFALEKHAQYIVLVPCCQAEVAGVLRRN 183

Query: 203 KGKSLANSLTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYKVSVTELVGWEHSMKNELII 262
           KGKSL N+LTEIWRHPLHTREFGSQVTNVLRCLQLEAHGY+VSVTELVGWEHSMKNELI+
Sbjct: 184 KGKSLGNALTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYQVSVTELVGWEHSMKNELIV 243

Query: 263 AQYRDLPRRRPAERLQEVLRTLGLEEMGQRFFA 295
           AQY+DLPRRRP ERL EVL TLGLEE+ +RFFA
Sbjct: 244 AQYKDLPRRRPTERLAEVLSTLGLEELRERFFA 276


>FN0778 [QR] COG0500 SAM-dependent methyltransferases Fnu Fusobacterium
           nucleatum
          Length = 412

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 153/289 (52%), Gaps = 23/289 (7%)

Query: 22  SAPQAHEIRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPLLQEV-----L 76
           +  + + +  G  I+ L EL +++ +GK+ + S  K KQ+    +FI+ ++ E+     +
Sbjct: 120 NKKKQYILNEGDKIDFLIELGLMSVEGKILKSSYNKFKQINKYLEFIDDVIVELKTKKLI 179

Query: 77  DQHPDVSLVDHGAGKSYLGFILYDLFFKGLPG--APHIYGIETREELVRKSEELASRLGF 134
           + H  ++++D G GKSYL F LY  + K      +  I G++ +++++    +LA +L +
Sbjct: 180 NNH--INILDFGCGKSYLTFALY-YYLKNYRKDLSFSIVGLDLKKDVIEFCNKLAQKLSY 236

Query: 135 GGMSFLNLSVADSISSPSLPEKIDVVTALHACDTATDDAIHFALAKEARFIVLVPCCQAE 194
             + FLN ++ D        +++D+V +LHAC+ ATD ++  AL+  A+ I+ VPCC  E
Sbjct: 237 ENLEFLNGNIKDY----DRAKEVDLVFSLHACNNATDYSLEKALSLNAKAILAVPCCHHE 292

Query: 195 VASVLNRNKGKSLANSLTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYKVSVTELVGWEH 254
               + +NK     ++L  I  + +   +F S  T+  R L LE  GYK  + E +  EH
Sbjct: 293 FFEKIQKNKDSKFYDTLKIIADNGIVLDKFASLATDSFRSLTLELCGYKTKMIEFIDMEH 352

Query: 255 SMKNELI--IAQYRDLPRRRPAERLQE---VLRTLG----LEEMGQRFF 294
           + KN LI  I       +    E+L+E   + + LG    LEE+ +++F
Sbjct: 353 TPKNILIKAIKSRSSNLKENLKEKLKEYNSLKKFLGIQPLLEELTKKYF 401


>CAC0151 [QR] COG0500 SAM-dependent methyltransferases Cac Clostridium
           acetobutylicum
          Length = 386

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 12/233 (5%)

Query: 29  IRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPLLQEVLDQHPDVSLVDHG 88
           I+ G + +LLK + I+T+D K+  D  RK  Q+ H  + I+  L  +  ++  ++++D G
Sbjct: 130 IKIGPANDLLKAIDIMTKDNKVKNDKIRKYNQIDHFIELIDSTLDSI-SRNKHITILDCG 188

Query: 89  AGKSYLGFILYDLFFKGLPGAPHIYGIETREELVRKSEELASRLGFGGMSFLNLSVADSI 148
            GKSYL F L     +         GI+  E +++KS+ +A  LG+  M F  + + D  
Sbjct: 189 CGKSYLTFALNYYLTEVKKVKCSFIGIDISEAVIQKSKSIAQTLGYRNMDFYAMDIHDY- 247

Query: 149 SSPSLPEKIDVVTALHACDTATDDAIHFALAKEARFIVLVPCCQAEVASVLNRNKGKSLA 208
             P    KI++V +LHACDTATD A+   +  E+  I+ VPCC  E+ S  +    K   
Sbjct: 248 -KPD--RKINMVISLHACDTATDMALALGIRLESDAIIAVPCCHKEMLSQYSYEPFK--- 301

Query: 209 NSLTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYKVSVTELVGWEHSMKNELI 261
               +I +H +    F   +T+ +R L LEA GY V+  E +    + KN LI
Sbjct: 302 ----DILKHGIFKARFADVLTDGMRSLMLEAKGYDVTPVEYISPLETPKNLLI 350