BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0122.p (265 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport... 338 5e-93 DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport... 276 4e-74 AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport... 249 6e-66 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 221 1e-57 STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 219 3e-57 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 219 5e-57 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 219 5e-57 livF [E] COG0410 ABC-type branched-chain amino acid transport sy... 219 6e-57 PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport... 219 6e-57 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 219 6e-57 >RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 247 Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 167/242 (69%), Positives = 201/242 (83%) Query: 23 VLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASG 82 ++LEV+ L RYGKV AL +L + AGQIVTVIGPNGAGKST+L A+MGALP +A+G Sbjct: 3 IILEVTDLHVRYGKVEALHGASLKVGAGQIVTVIGPNGAGKSTMLGAIMGALPISGSANG 62 Query: 83 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQ 142 +++ G +++ + VE+RVARG+ LVPEKRELF TM+VEDNL+LGAY+R R GE YLDQ Sbjct: 63 VVSYLGHNLAGLPVEKRVARGMCLVPEKRELFATMSVEDNLVLGAYRRKRAGERNYLDQM 122 Query: 143 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 202 D VY LFPRLKERR+Q AGTLSGGERQMLAVGRALMAKPQ+LMLDEPSLGLAPLI +EI Sbjct: 123 DVVYQLFPRLKERRRQEAGTLSGGERQMLAVGRALMAKPQLLMLDEPSLGLAPLIVKEIF 182 Query: 203 SIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLGV 262 IIS LRSTGVATLL+EQNARAALQVADYG+VLE G++ GPA LA + R++E+YLG+ Sbjct: 183 HIISNLRSTGVATLLIEQNARAALQVADYGYVLETGDMTLEGPARELAVNPRVIETYLGL 242 Query: 263 GR 264 + Sbjct: 243 AK 244 >DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 238 Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 147/238 (61%), Positives = 181/238 (76%), Gaps = 8/238 (3%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 LL+V L YG+V A+T LS+ AGQIV+VIG NGAGKSTLL A++GALPS G Sbjct: 8 LLQVDDLHVAYGRVEAVTGVNLSVEAGQIVSVIGANGAGKSTLLAALIGALPS----RGV 63 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 I + G DV QM +E+RVA G++LVPE+RELF +MTVEDNL LGAY + +SG D Sbjct: 64 IRYAGRDVRQMPLEDRVAAGMTLVPERRELFGSMTVEDNLQLGAYTQRAGMQSGLAD--- 120 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 V+ FPRL ERRKQ AGTLSGGE+QMLA+GRALMA+P++L+LDEPSLGLAPLI R+IL Sbjct: 121 -VFRRFPRLLERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSLGLAPLIVRDILH 179 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLG 261 I+++LR +GV LLVEQNARAAL ++DYG+VLE G + GPA LA+D +V SYLG Sbjct: 180 IVAELRDSGVTVLLVEQNARAALAISDYGYVLEGGHVKLEGPAARLADDPAVVASYLG 237 >AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 240 Score = 249 bits (635), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 134/242 (55%), Positives = 176/242 (72%), Gaps = 8/242 (3%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 LL++ + YG+ + +L++ AG IVTVIG NGAGK+TLLNA+MG +PS G Sbjct: 5 LLDIRDIHVAYGRAEVVHGISLAMAAGSIVTVIGANGAGKTTLLNAIMGVIPS----RGT 60 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 I + G V +E RVA GL LVPEKRELF +MTVEDN+ LG + R R + + ++ Sbjct: 61 ILYDGAPVPDT-IEGRVAAGLCLVPEKRELFGSMTVEDNIELGGFLRSRQERN---ETRE 116 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 V+ LFPRL+ER KQ AGTLSGGERQMLA+ RALM++P++L+LDEPSLGLAPLI EIL Sbjct: 117 EVHALFPRLRERSKQLAGTLSGGERQMLALARALMSRPRLLLLDEPSLGLAPLIVAEILR 176 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLGVG 263 I+++LR TGV+ LLVEQNARAAL++AD +++E+GE+ +GPA LA D ++ SYLG G Sbjct: 177 IVAELRRTGVSILLVEQNARAALEIADEAYLVELGEVRRSGPAAELAVDPALMASYLGPG 236 Query: 264 RH 265 H Sbjct: 237 EH 238 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 164/242 (67%), Gaps = 5/242 (2%) Query: 21 APVLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAA 80 + ++LEV +L YG + A+ L + GQIVT+IG NGAGK+T L+A+ G + A Sbjct: 2 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV---RAQ 58 Query: 81 SGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLD 140 G+I F G+D++ G++LVPE R +F +TV +NL++GAY +R + G Sbjct: 59 KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY--NRKDKEGIKR 116 Query: 141 QQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITRE 200 +++++LFPRLKER KQ GTLSGGE+QMLA+GRALM++P++LM+DEPSLGLAP++ E Sbjct: 117 DLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 176 Query: 201 ILSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYL 260 + +I ++ G LLVEQNA AL+VA YG+VLE G+IV G A L ++ + ++YL Sbjct: 177 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYL 236 Query: 261 GV 262 GV Sbjct: 237 GV 238 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 161/238 (67%), Gaps = 6/238 (2%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 +L +SA YGK+ AL D +L + G+IVT+IG NGAGK+TLL + G A+SGR Sbjct: 5 MLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRASSGR 61 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 + F G+D++ + + + +++VPE R +F+ MTVE+NL +G + R+ + ++ Sbjct: 62 VVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDR---FQERIK 118 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 +VY LFPRL ERR Q AGT+SGGE+QMLA+GRALM++P++L+LDEPSLGLAP+I ++I Sbjct: 119 WVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLG 261 I QLR G+ LVEQNA AL++AD G+VLE G +V + L + + +YLG Sbjct: 179 TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 236 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 6/246 (2%) Query: 16 VRATTAPVLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALP 75 +R V+L +SA YGK+ AL + +L + G+IVT+IG NGAGK+TLL + G Sbjct: 1 MRHKMEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--- 57 Query: 76 SGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGE 135 A SGRI F +D++ + + + +++VPE R +F+ MTVE+NL +G + R+ Sbjct: 58 DPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ- 116 Query: 136 SGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAP 195 + ++ +VY LFPRL ERR Q AGT+SGGE+QMLA+GRALM+ P++L+LDEPSLGLAP Sbjct: 117 --FQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAP 174 Query: 196 LITREILSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRI 255 +I ++I I QLR G+ LVEQNA AL++AD G+VLE G +V + L + + Sbjct: 175 IIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAV 234 Query: 256 VESYLG 261 +YLG Sbjct: 235 RSAYLG 240 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 6/246 (2%) Query: 16 VRATTAPVLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALP 75 +R V+L +SA YGK+ AL + +L + G+IVT+IG NGAGK+TLL + G Sbjct: 1 MRHKMEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--- 57 Query: 76 SGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGE 135 A SGRI F +D++ + + + +++VPE R +F+ MTVE+NL +G + R+ Sbjct: 58 DPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ- 116 Query: 136 SGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAP 195 + ++ +VY LFPRL ERR Q AGT+SGGE+QMLA+GRALM+ P++L+LDEPSLGLAP Sbjct: 117 --FQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAP 174 Query: 196 LITREILSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRI 255 +I ++I I QLR G+ LVEQNA AL++AD G+VLE G +V + L + + Sbjct: 175 IIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAV 234 Query: 256 VESYLG 261 +YLG Sbjct: 235 RSAYLG 240 >livF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 241 Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 6/246 (2%) Query: 16 VRATTAPVLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALP 75 +R V+L +SA YGK+ AL + +L + G+IVT+IG NGAGK+TLL + G Sbjct: 1 MRHKMEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--- 57 Query: 76 SGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGE 135 A SGRI F +D++ + + + +++VPE R +F+ MTVE+NL +G + R+ Sbjct: 58 DPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ- 116 Query: 136 SGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAP 195 + ++ +VY LFPRL ERR Q AGT+SGGE+QMLA+GRALM+ P++L+LDEPSLGLAP Sbjct: 117 --FQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAP 174 Query: 196 LITREILSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRI 255 +I ++I I QLR G+ LVEQNA AL++AD G+VLE G +V + L + + Sbjct: 175 IIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAV 234 Query: 256 VESYLG 261 +YLG Sbjct: 235 RSAYLG 240 >PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pya Pyrobaculum aerophilum Length = 234 Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 10/240 (4%) Query: 25 LEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGAL-PSGAAASGR 83 L ++ LS+ YGK+ L + IV+++GPNGAGK+T L ++MG + P G G+ Sbjct: 3 LRITQLSSGYGKLQVLFGLTFEVGNNSIVSLLGPNGAGKTTTLLSIMGVVKPWG----GK 58 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAY-KRHRNGESGYLDQQ 142 + G DV+ ++V GLSLVPE R LF MTVE+NLL+GAY KR R D Sbjct: 59 VELGGVDVTSAPPYKKVELGLSLVPEGRRLFPEMTVEENLLMGAYTKRAREKAR---DSL 115 Query: 143 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 202 +FVY+LFPRLKERR+Q AGT+SGGE+QMLA+ RALMA+P+VL++DEPS GLAP + ++ Sbjct: 116 EFVYSLFPRLKERRRQKAGTMSGGEQQMLAIARALMARPRVLLIDEPSAGLAPKVVADLF 175 Query: 203 SIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLGV 262 ISQLRS ++ LLVEQN AL+++DY +VLE G IV G LAE++ + +YLGV Sbjct: 176 QTISQLRSE-MSVLLVEQNVAVALEISDYAYVLENGRIVLQGTPSELAENQHVKRAYLGV 234 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 156/238 (65%), Gaps = 5/238 (2%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 +LE+ L YG + AL L+++ G++VT+IG NGAGKST L A+ + +G+ Sbjct: 32 ILEIQELDVNYGGIQALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIV---TPKNGQ 88 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 I + G ++++ E V G++ PE R + TV DNLLLGAY R E +Q Sbjct: 89 IIYSGRNITRRLPHEVVKFGIAHCPEGRRVLAKQTVLDNLLLGAYIRSNQTEIKADIKQQ 148 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 F LFPRL +R+ Q AGTLSGGE+QMLA+ RALM++PQ+L+LDEPSLGLAP I REI S Sbjct: 149 F--ELFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVREIFS 206 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLG 261 II LR+TGV LLVEQNA ALQ+AD G+VLE G I +G A L D R+ ++YLG Sbjct: 207 IIENLRATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDERVKKAYLG 264