BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0084.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2941 [U] COG1826 Sec-independent protein secretion pathway co...   155   5e-38
NMB0600 [U] COG1826 Sec-independent protein secretion pathway co...    98   9e-21
NMA0804 [U] COG1826 Sec-independent protein secretion pathway co...    98   1e-20
VC0087 [U] COG1826 Sec-independent protein secretion pathway com...    59   4e-09
XF0563 [U] COG1826 Sec-independent protein secretion pathway com...    58   9e-09

>RSc2941 [U] COG1826 Sec-independent protein secretion pathway components
           Rso Ralstonia solanacearum
          Length = 172

 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 116/177 (65%), Gaps = 10/177 (5%)

Query: 1   MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
           MID+G++KLALIG VALVVIGPERLPKVAR AG L GRAQRYI DVK+EVSRE+EL+ELR
Sbjct: 1   MIDLGISKLALIGAVALVVIGPERLPKVARTAGALIGRAQRYIADVKAEVSREIELEELR 60

Query: 61  KMRQDVESAASEVSGSIHKSMAETEASLNDAWNG--GDDASGSDSAAAGNWTRQPDPSLL 118
           KMR + E AA  V  +IH+ ++   + +N+  N   GD AS   +  A  W  +P P+  
Sbjct: 61  KMRTEFEEAARNVEQTIHQEVSRHTSEINERLNEALGDPASRQTATQAAEW--RPAPAKS 118

Query: 119 AIKAKAFRRKKLSRTTGVPAWYKHQSGHRTRVISASARVAKYRRPVGAGKSAG--FF 173
                ++R K+L+    +P WY+ + G R    S +ARV ++R P+ A +S G  FF
Sbjct: 119 RNGRNSWRNKQLA----MPKWYRRKQGVRMWAQSGAARVKRHRPPIVAAQSRGRSFF 171


>NMB0600 [U] COG1826 Sec-independent protein secretion pathway components
          Nme Neisseria meningitidis MC58
          Length = 228

 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 67/94 (71%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M D GL +L  +G++AL+V+GPERLP+ AR AG L GR QR++  VK E   ++EL+ELR
Sbjct: 1  MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVGSVKQEFDTQIELEELR 60

Query: 61 KMRQDVESAASEVSGSIHKSMAETEASLNDAWNG 94
          K +Q+ E+AA++V  S+ ++  + E +L+D  +G
Sbjct: 61 KAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDG 94


>NMA0804 [U] COG1826 Sec-independent protein secretion pathway components
          NmA Neisseria meningitidis Z2491
          Length = 228

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 67/94 (71%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M D GL +L  +G++AL+V+GPERLP+ AR AG L GR QR++  VK E   ++EL+ELR
Sbjct: 1  MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVGSVKQEFDTQIELEELR 60

Query: 61 KMRQDVESAASEVSGSIHKSMAETEASLNDAWNG 94
          K +Q+ E+AA++V  S+ ++  + E +L+D  +G
Sbjct: 61 KAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDG 94


>VC0087 [U] COG1826 Sec-independent protein secretion pathway components
          Vch Vibrio cholerae
          Length = 133

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M DIG  +L LI +VALVV+GPERLP   R        A+   N VK E++ E+++ EL+
Sbjct: 1  MFDIGFWELVLIAIVALVVLGPERLPHAIRSVAKFVSAAKSMANSVKDELAHELKVQELQ 60

Query: 61 K-MRQDVESAASEVSGSIHKSM 81
          + +R+  +     +S  + KS+
Sbjct: 61 ENLRKAEQMGMQNLSPELQKSV 82


>XF0563 [U] COG1826 Sec-independent protein secretion pathway components
          Xfa Xylella fastidiosa 9a5c
          Length = 140

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRA 39
          M DIG ++L LI VVALVV+GPERLPK AR AG L  RA
Sbjct: 1  MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRA 39