BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0069.p (501 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum 157 7e-38 RSp1524_1 Non COG 147 6e-35 sll1673_3 [T] COG2199 FOG Syn Synechocystis 146 1e-34 mll9509 [T] COG3706 Response regulator containing a CheY-like re... 145 2e-34 RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum 142 2e-33 RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum 140 7e-33 alr3599 [T] COG3706 Response regulator containing a CheY-like re... 131 4e-30 RSp0400_1 Non COG 131 4e-30 aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 130 1e-29 slr1047_3 [T] COG2199 FOG Syn Synechocystis 126 1e-28 >RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 206 Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 117/182 (64%), Gaps = 6/182 (3%) Query: 311 RELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRS--QRSPTVGFSTLFIDVD 368 ++L KR+AA ++ +LA TD LTGL NRR+LD L W+R+ +R P S L IDVD Sbjct: 2 KQLEKRLAAGRRHAELAITDALTGLPNRRALDAFLDKEWKRALRERWP---VSVLMIDVD 58 Query: 369 HFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMA 428 FK YND YGH GDT L+AVA ++AH R DLA RYGGEEF ++L TD +GA+ +A Sbjct: 59 AFKPYNDHYGHLGGDTALKAVARCIQAHASRSGDLAARYGGEEFCIVLPHTDLEGAIAVA 118 Query: 429 QQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRA-RHQRMEDVLNAADHAPYIAKREGRN 487 + + +A+ + IPH+ P G++SVSIG AT A R E + AAD Y AK +GRN Sbjct: 119 EHIRQAVLALHIPHAQGPAGILSVSIGAATDTPALSGDRAETLTQAADTQLYRAKTQGRN 178 Query: 488 RV 489 R Sbjct: 179 RT 180 >RSp1524_1 Non COG Length = 315 Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 158/294 (53%), Gaps = 7/294 (2%) Query: 19 VLTICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQHPLDLT 78 V T+ SLYE A A+NV+LI+QR I+RN+E+ L+M + + P L Sbjct: 28 VATLTVLSLYEMRMDALARARDSADNVSLILQRDIARNLEVYELSMQAVIDGVRDPAILA 87 Query: 79 NASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVNYSERTYFTVHRD 138 R LF + A + +L + +A G V + SR + P ++ +R YF + + Sbjct: 88 -LPPTIRQLVLFDRSTNAQDLGSLLVTNAAGDVIIDSR--SVPPRRIHIGDRDYFKIQQQ 144 Query: 139 SADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLFTGLTLGE 198 SADAGL++S+P + + +S+RL+ DG+F+G+V+ L ++YFR LF G++LGE Sbjct: 145 SADAGLYLSKPFMPRINGVETSIGISQRLNGPDGTFNGIVVGTLRLNYFRRLFDGVSLGE 204 Query: 199 DGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARAHTDGVERL 258 ++L DG MR PY IG +++ +P FQ + G+ DGVERL Sbjct: 205 HAAITLVRTDGTLLMRRPYDAHLIGSDLSASPAFQMRKDA---PAGSLIVTGAIDGVERL 261 Query: 259 YTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSV-LLLLIIFTALAGVLLMLVRR 311 +++RRI D PLI+ +G + I+ W + + ++L++ L G+ ++ R+ Sbjct: 262 FSYRRIGDYPLILSVGLALDDIYAEWRQRAWWIGGIVLLLDAVLIGMSILFARQ 315 >sll1673_3 [T] COG2199 FOG Syn Synechocystis Length = 176 Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 2/172 (1%) Query: 318 AAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDHFKRYNDTY 377 AA +QL+ LA DGLT + NRR DE L WQR R S + +D+D+FK YND Y Sbjct: 3 AANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQK-PLSLILVDIDYFKAYNDLY 61 Query: 378 GHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCEAIYS 437 GH+ GD LQ VA L +R DL RYGGEEFV++L T+ Q AL MA+ + +AI + Sbjct: 62 GHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAA 121 Query: 438 RGIPHSGSPLG-VISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNR 488 IPH GS + +++SIGV+++ +E +++ AD A Y AK +GRNR Sbjct: 122 LAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNR 173 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Mlo Mesorhizobium loti Length = 354 Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 4/175 (2%) Query: 317 VAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDHFKRYNDT 376 ++A +LE L R DGLTGL NRR DE L A W+R+ R+ + S L ID D+FKRYNDT Sbjct: 179 ISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQS-PLSLLMIDADNFKRYNDT 237 Query: 377 YGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCEAIY 436 YGH GD VL+ +A V+ + R DLA RYGGEEFV++L T + + +A+QL + + Sbjct: 238 YGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVR 297 Query: 437 SRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNRVCV 491 IPH +++S+GVAT ++ D +NAAD A + AK EGRNRV + Sbjct: 298 ELNIPHGPD---RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVAL 349 >RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 190 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 113/194 (58%), Gaps = 16/194 (8%) Query: 313 LLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDHFKR 372 L +R+ AE++L LA TDGLTGL RR+LD AL A WQR+ R + L IDVD FK Sbjct: 1 LRRRMEAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQGRP-LAVLMIDVDEFKH 59 Query: 373 YNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLC 432 YND YGH GDTVL+ VA + ++R D AGRYGGEEF VLL TD GA R+A+ + Sbjct: 60 YNDRYGHAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEIIR 119 Query: 433 EAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMED-------VLNAADHAPYIAKREG 485 + + G P++GS G ++VSIGVA H D +L+ AD Y AK G Sbjct: 120 ATVLAAGEPNAGSAHGRLTVSIGVAA-----HDGRGDTGTTPARLLHHADLQLYEAKSGG 174 Query: 486 RNRVCVAHPCQNDP 499 RN V P Q P Sbjct: 175 RNAVM---PRQERP 185 >RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 177 Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 107/178 (60%), Gaps = 7/178 (3%) Query: 316 RVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRS--QRSPTVGFSTLFIDVDHFKRY 373 R+ +++ +LA TD LTGL NRR+LDE L A W+R+ +R P S L IDVDHFK Y Sbjct: 1 RIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQP---LSVLMIDVDHFKAY 57 Query: 374 NDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCE 433 ND YGH GD LQAVA ++A+L+R DLA RYGGEEF V+L +D A +A+ + Sbjct: 58 NDHYGHPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRR 117 Query: 434 AIYSRGIPHSGSPLGVISVSIGVATMNRAR--HQRMEDVLNAADHAPYIAKREGRNRV 489 AI IPH+ S ++VSIG A+ A R + AAD Y AK GRNR Sbjct: 118 AILVLNIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRT 175 >alr3599 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Nos Nostoc sp. PCC 7120 Length = 344 Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 97/176 (55%), Gaps = 6/176 (3%) Query: 318 AAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQR--SQRSPTVGFSTLFIDVDHFKRYND 375 AA L+ LA DGLTGL NRR D L W + +P S + D+D+FK YND Sbjct: 166 AANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAP---LSLILCDIDYFKFYND 222 Query: 376 TYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCEAI 435 YGH GD LQ V AVL Q+ DL RYGGEEF V++ T +GA+ +A + ++ Sbjct: 223 QYGHPTGDICLQKVGAVLSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQTSV 282 Query: 436 YSRGIPHSGSPLGV-ISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNRVC 490 I H S + I++S+GVAT+ D++ AAD A Y AK GRNR+C Sbjct: 283 RDLQIAHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNRIC 338 >RSp0400_1 Non COG Length = 306 Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 155/293 (52%), Gaps = 10/293 (3%) Query: 9 ALILGVIIMMVLTICGA---SLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 A ++G ++ LT+ SLYE A N+ LI++R ++RN+E+ SL+++ Sbjct: 10 ARLIGTALLFSLTVSAGAALSLYEMRLDALKCAKDAGANIALIIERDVARNLELYSLSVE 69 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 T+ R P ++ S+ R LF A A + ++ + DA G V + S+ A P+ + Sbjct: 70 TVLERLADP-EVHQVSNHIRRLVLFDGVAQARDLGSILVTDARGQVVLDSK--AEPARNI 126 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 + +R YF + IS+P++A G + V S+RL+ G F GVV AL +S Sbjct: 127 HIGDRDYFQQQARIDSTAVLISKPLEARTGYGASITV-SRRLNDAQGKFAGVVSGALRIS 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF+G+TLG G ++L+ DG R P P++ E +P + L+ ++ DG Sbjct: 186 YFNRLFSGMTLGPKGAIALFYADGTLIARRPAPPAAGAAE-KRSP--EALKRVIDTTDGL 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIF 298 + ++ DG+ERLYT+RRI PL V +G + I+ W +++ LL+ +F Sbjct: 243 YLGKSVRDGIERLYTYRRIGHYPLYVAVGAATEDIYANWTSRAWAIGLLVAVF 295 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 112/182 (61%), Gaps = 5/182 (2%) Query: 311 RELLKRVAAEKQL-EDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDH 369 +++L + EK L E +A TD LTGL NRR E +++R FS L ID+D+ Sbjct: 67 KKILIETSKEKTLYERMALTDPLTGLYNRRVFTEMAEKELAKAKRYG-YNFSILMIDIDN 125 Query: 370 FKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQ 429 FK+ NDTYGH++GD VL+ ++ +L+ ++ R DL R+GGEEF+V+L T+ GA++ A+ Sbjct: 126 FKKINDTYGHDVGDLVLKKISEILKRNV-RGADLVARFGGEEFIVMLSNTNLNGAVKKAE 184 Query: 430 QLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNRV 489 QL I I ++VSIGV+T H+ +E+++ AD A Y AKR+G+NRV Sbjct: 185 QLRRMIEQTPIELPNGEKLRVTVSIGVSTYR--GHESLEELIKEADQALYEAKRKGKNRV 242 Query: 490 CV 491 V Sbjct: 243 EV 244 >slr1047_3 [T] COG2199 FOG Syn Synechocystis Length = 184 Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 6/172 (3%) Query: 321 KQLEDLARTDGLTGLLNRRSLDEALLAVWQRS--QRSPTVGFSTLFIDVDHFKRYNDTYG 378 ++L+ LA D LT + NRR L W++ Q+SP S + DVD+FK YND YG Sbjct: 6 QRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSP---ISLILCDVDYFKNYNDLYG 62 Query: 379 HEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCEAIYSR 438 H+MGD LQ+VA V++ L+R +D+ RYGGEEF+V+L TD+ GA + Q++ + Sbjct: 63 HQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLAEA 122 Query: 439 GIPHSGSPLG-VISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNRV 489 I H+ SP +++S+G+ T H D++ AD A Y AK GRN+ Sbjct: 123 QISHADSPTSRYLTISLGIGTTVPLLHYHPSDLIKIADQALYAAKAAGRNQT 174