BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0054.p (381 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2607 [E] COG0559 Branched-chain amino acid ABC-type transport... 166 1e-40 RSp0705 [E] COG0559 Branched-chain amino acid ABC-type transport... 161 2e-39 RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 155 1e-37 AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 142 1e-33 DRA0262 [E] COG0559 Branched-chain amino acid ABC-type transport... 137 3e-32 DRA0261_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 127 4e-29 AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 73 1e-12 RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport... 73 1e-12 TM1137 [E] COG4177 ABC-type branched-chain amino acid transport ... 67 5e-11 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 65 3e-10 >AGc2607 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 344 Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 143/223 (64%), Gaps = 3/223 (1%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD++IA L DG+TNG +Y L+ +A+VLVF+VTR++FIPQGEFVA+GALTLA+L G+ Sbjct: 1 MDATIATFLIQDGVTNGAIYALLGLAIVLVFSVTRVIFIPQGEFVAHGALTLALLDAGRV 60 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFALP 120 PG L LLL + + A + ++ R + L +ALA L +P I LV AP Q Sbjct: 61 PGTLNLLLCMGVVALVLDLWAMRRDMRLPRLLQALAVNLALPGAIYGLVAILAPMQLPSF 120 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 ++ ++T+ +I +G +Y++ Y ++DASVL LLI SVG+HLA+ GLGL FFG EG R Sbjct: 121 LRAMITIAIIAPMGYYVYRIAYRPLSDASVLVLLIASVGVHLALMGLGLAFFGPEGLRAA 180 Query: 181 AFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYF---LFGK 220 A D + L + ++AQ++ + A + G+ L+F L GK Sbjct: 181 ALSDGGFTLGPMLVTAQSIFIYLATILVMIGLYLFFEKTLLGK 223 >RSp0705 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 350 Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/227 (49%), Positives = 147/227 (64%), Gaps = 11/227 (4%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIAAIL DG+T+G +Y L+A+ALVLVF+VTR++FIPQGEFVAYGALTLA +Q + Sbjct: 1 MDLSIAAILAQDGVTSGAIYALLALALVLVFSVTRVIFIPQGEFVAYGALTLAAIQTNRA 60 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRAL-------AGTLGVPLVIAALVWWAA 113 P LLL L + + L Q L AL A L PL + A A Sbjct: 61 PLSASLLLALGVLTFVAELGRTLL--QPELRRHALRTGAIYAAKYLLFPLAVFAATSALA 118 Query: 114 PQQFALPVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFG 173 P PVQV L LL++ +GP++Y++ YE +A+AS L LLIVSVG+H AM GLGLV FG Sbjct: 119 PMTLPQPVQVALALLIVIPMGPMIYRLAYEPLAEASTLVLLIVSVGVHFAMVGLGLVMFG 178 Query: 174 AEGFRTPAFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYFLFGK 220 AEG RT AF D R+++ +LT+S Q++ VV +A+ ++LYF FG+ Sbjct: 179 AEGSRTEAFSDARFDVGALTVSGQSLWVVMVSALMI--VALYFYFGR 223 >RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 351 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/226 (47%), Positives = 145/226 (64%), Gaps = 21/226 (9%) Query: 153 LLIVSVGIHLAMTGLGLVFFGAEGFRTPAFWDERWNLAS-LTLSAQTVVVVAAA------ 205 +L+ VG +T G F G + A+ ++ L+ + L A + VA+A Sbjct: 61 VLLTGVG---GLTSFGQAAFVGLGAYSTAYLSTQYGLSPWIGLLAGLAITVASAYVIGLI 117 Query: 206 -----------AIFTRGISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIW 254 A G+SL+FLFG + FLGKYDG++GIP L L G L R ++YLIW Sbjct: 118 TMRMSGHYLPLATIAWGLSLFFLFGNLAFLGKYDGLNGIPVLNLLGKPLQTGREMFYLIW 177 Query: 255 AIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWL 314 A+V+ A NLL+SR GRAIRALKGG +MAEAMGV+T K++IFV AA+LA +SG+L Sbjct: 178 AVVVVAVLAVQNLLNSRPGRAIRALKGGGTMAEAMGVNTAWMKVVIFVAAAILACISGFL 237 Query: 315 FAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 +AH+QR VNP+PF L GIEYLF+ VVGG+ H+WGA+LGAG+L +L Sbjct: 238 YAHLQRAVNPTPFGLNYGIEYLFMAVVGGVGHVWGAVLGAGLLTIL 283 >AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/150 (54%), Positives = 111/150 (74%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 G+++Y+LFG+++ LG+YDGISGIP L L G L +YY+IW V+A A + NLLDS Sbjct: 125 GLAIYYLFGRIELLGRYDGISGIPPLSLGGEALMSSSSIYYIIWIFVIAVAIGAQNLLDS 184 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GR IRAL+GG AEA GV+ R K+ +FVFAA++A++SGWL+AHMQR++NP+PF L Sbjct: 185 RVGRGIRALRGGSQAAEAFGVNIERAKLTVFVFAAVVAALSGWLYAHMQRSINPTPFGLD 244 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 MGI Y+ + VVGG + GA+ GA V+ +L Sbjct: 245 MGITYMLMAVVGGSGRVVGAIFGASVVLVL 274 >DRA0262 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Dra Deinococcus radiodurans Length = 349 Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 112/223 (50%), Positives = 148/223 (66%), Gaps = 3/223 (1%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 D +I ILT DGLTNG VY L+++ALVLVF VTR++FIPQGEFV +GALTLA LQ G+ Sbjct: 4 FDPTIFPILTTDGLTNGAVYALLSLALVLVFAVTRVIFIPQGEFVMFGALTLASLQAGKV 63 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFALP 120 PG L L+L L + + LRAG R++ LG ++ AL W AP + L Sbjct: 64 PGTLKLVLALLALSVILNVVQSLRAGHTQAALRSVLIGLGAWALLWALTGWLAPLKAPLA 123 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 VQVLLTLLL+ LGPL+Y+VVY+ + +A+VL LLI SV +HLA+TGLGL FFGAEG TP Sbjct: 124 VQVLLTLLLVVPLGPLLYRVVYQPLRNATVLVLLIASVALHLALTGLGLAFFGAEGSNTP 183 Query: 181 AFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYF---LFGK 220 AF ++ S +LS Q ++V+ + G++++F L GK Sbjct: 184 AFVSGDLHIGSFSLSYQNLLVMVVSLALMAGLAVFFERTLLGK 226 >DRA0261_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Dra Deinococcus radiodurans Length = 316 Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 97/150 (64%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 GISLY++FG LG + GI IP + G L + R YL A + + LL S Sbjct: 118 GISLYYVFGNTPALGGFTGIREIPPVSFFGRVLDQPREFAYLALAFLALTIVAAQFLLSS 177 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRA+RAL+ G +AEA G +T ++ +FV +A++ASV+GWL+AH QR VNP+PF L Sbjct: 178 RFGRALRALRTGPVVAEAFGANTFALRVQVFVLSAVMASVAGWLYAHQQRFVNPTPFGLN 237 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 +GIEYLF+ V+GG ++WG + GA ++ LL Sbjct: 238 VGIEYLFMAVIGGSGYVWGGVAGAVLITLL 267 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 228 DGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAE 287 G+ PAL LAG+ Y V A +++ L+ S+ GR A++ + A Sbjct: 151 SGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVSSQTGRNFIAVRDNETAAR 210 Query: 288 AMGVDTGRYKILIFVFAALLASVSG--WLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIA 345 +GV R K+L F ++ + V+G W FA++ RTV P+ F+L + LFIV++GG+A Sbjct: 211 IIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYL-RTVEPAGFNLDRSFQILFIVIIGGLA 269 Query: 346 HIWGALLGAGVL 357 I GA GA ++ Sbjct: 270 SIRGAFFGAALI 281 >RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 378 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 11/138 (7%) Query: 228 DGISGIPALQLAGLDLAKER----------HLYYLIWAIV-LAAAWVSLNLLDSRAGRAI 276 G++ I ++L G D +K H+YY ++ ++ + V L L +SR GRA Sbjct: 168 KGVNLIEPVKLFGFDFSKRHDIFGIHFEPVHMYYYLFVLLAMGIITVCLRLQNSRIGRAW 227 Query: 277 RALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYL 336 A++ A+AMG++T K+L F A VSG +FA Q V+P F L I L Sbjct: 228 VAIREDEIAAKAMGINTRNIKLLAFAMGASFGGVSGAMFASFQGFVSPESFVLWESIYIL 287 Query: 337 FIVVVGGIAHIWGALLGA 354 IVV+GG+ HI G +LG Sbjct: 288 AIVVLGGMGHIPGVILGG 305 >TM1137 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Tma Thermotoga maritima Length = 359 Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 4/107 (3%) Query: 266 NLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPS 325 +L++S GRA++A++ R AEAMG++ ++++L FV A A VSG L+AH T++P Sbjct: 194 SLVNSSYGRALKAIREDRIAAEAMGINVFKHQLLSFVIGAFFAGVSGSLYAHWLTTIDPR 253 Query: 326 PFSLAMGIEY--LFIVVVGGIAHIWGALLGAGVLKLL--WWRCGSSP 368 +L + + L ++V+GG+ I G+L+GA + +L W R P Sbjct: 254 TTTLGPMLTFYVLIMIVLGGLGSISGSLIGAALFAILFEWLRDLEEP 300 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 21/191 (10%) Query: 180 PAFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYFLFGKVDFLGKYDGISGIP--ALQ 237 P+F + + LA +L+AQ + L +++ ++D D + +P Sbjct: 122 PSFRLKEYYLAMASLAAQLI--------------LEYVYSRID----PDQYTPVPPETKT 163 Query: 238 LAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYK 297 L G+ L + LYY I AI + A + N+ S GRA++A++ +EA+G++ K Sbjct: 164 LLGISLTEPTALYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVASEAIGINVQLVK 223 Query: 298 ILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAH-IWGALLGAGV 356 F A V+G L+A + F+L IE L +V++GG +WG+LLG V Sbjct: 224 ATAFAIGGFYAGVAGGLYAIYSSGIGWEGFTLVNSIELLGMVLIGGPGRVVWGSLLGVLV 283 Query: 357 LKLLWWRCGSS 367 ++ W S+ Sbjct: 284 MRTGWTMMEST 294