BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0026.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0248 [K] COG2207 AraC-type DNA-binding domain-containing prote... 160 3e-39 CC2403 Non COG 142 7e-34 PA4120 [K] COG2207 AraC-type DNA-binding domain-containing prote... 141 2e-33 BMEII0641 [K] COG2207 AraC-type DNA-binding domain-containing pr... 134 2e-31 STM1108 [K] COG2207 AraC-type DNA-binding domain-containing prot... 125 2e-28 AGl645 [K] COG2207 AraC-type DNA-binding domain-containing prote... 123 5e-28 PM1524 [K] COG2207 AraC-type DNA-binding domain-containing prote... 122 8e-28 AGl475 [K] COG2207 AraC-type DNA-binding domain-containing prote... 64 5e-10 RSc1813 [K] COG2207 AraC-type DNA-binding domain-containing prot... 61 3e-09 >PA0248 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 288 Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 151/299 (50%), Gaps = 27/299 (9%) Query: 10 TSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVSAL 69 T DVP F LYG + +H E I RSR+HDW I PH HA L Q+L++ G Sbjct: 5 TRDVPVFKLYGAPLEWPTPDLLHCESIPARSRLHDWEIKPHRHADLAQLLYVRKGWAQLQ 64 Query: 70 MEEQVWEYDGPVVLTIHPSLVHGFDFSEQAVGFVLTVDPHVV--FSAGAGEGHGELFSPL 127 +E + + P + + P +HGF FSE+ G+VLT+ ++ A G L +P Sbjct: 65 VEGEPTRVEQPSIQFVPPLCIHGFQFSERIDGYVLTLAAPLLARLQAHLGAQRQALEAP- 123 Query: 128 FLRPMAIELGRAPDLRERMETLLRLLIAESAAPRTGHTLMLE--------WLARSVMLLL 179 L P+ + R ++TL + E A L+L+ WL R VM+ Sbjct: 124 GLYPVGAD-------RRYIDTLFDAIDGEYAGAAPARELLLQSLIGVLAVWLGRQVMV-- 174 Query: 180 VRLEADHRSAELTGRGDFELFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLA 239 R+ GRG E S F LVE+HF++ + YA +L I+P+ LN + +L+ Sbjct: 175 ------RRAEARPGRGQ-EYLSAFSQLVERHFREHLGIDEYARRLGISPAHLNGVARRLS 227 Query: 240 GHSAFDLAQQRLILEACRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRR 298 G +A + QRL+LEA R L Y V IA LGF +PAYF+R FKR GV+P +R+ Sbjct: 228 GQTALGIVHQRLLLEAKRDLVYTAMTVNEIADRLGFSEPAYFTRFFKRLSGVSPSVFRK 286 >CC2403 Non COG Length = 280 Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 12/277 (4%) Query: 24 RPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVSALMEEQVWEYDGPVVL 83 R + + +H+E ++ R+R +DW+I H HA L V + +G ++ + ++ P +L Sbjct: 2 RTVEGKFIHLEELDDRTRPNDWNIRAHAHADLNHVFHIAAGGGVMHVDGEAIDFAAPCLL 61 Query: 84 TIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGAGEGHGELFSPLFLRPMAIELGRAPDLR 143 + VHGF + + G VLT+ + A E F+ LF P + L ++ Sbjct: 62 LVPSGRVHGFAYQVETAGSVLTIADSYLRDLTARE---PAFASLFRAPRQLPLDAQSEIA 118 Query: 144 ERMETLLRLLIAESAAPRTGHTL---MLEWLARSVMLLLVRLEADHRSAELTGRGDFELF 200 + L R L+ AP G + +L L +V RL D + G L Sbjct: 119 SWLGELSRELV--WTAPAGGAAVEGRLLIVLVEAVR----RLVRDQSATPAMQGGHVTLV 172 Query: 201 SRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEACRKLT 260 +RFR LVE H+++ + YA +L + SRL CL++AG S L Q RL+LEA R L Sbjct: 173 ARFRELVEAHYREGLPIETYAGRLGVAVSRLRAACLRVAGASPLRLVQDRLLLEAKRALL 232 Query: 261 YVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYR 297 Y VA +AY LGF+DPAYFSR F + GV+PK YR Sbjct: 233 YSNMTVAEVAYHLGFEDPAYFSRFFAKAEGVSPKRYR 269 >PA4120 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 303 Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 8/300 (2%) Query: 8 PRTSDVPQFSLYGEA--SRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGH 65 P +P ++ G+ R DAE VH + + + ++ H H FQV ++ +G Sbjct: 2 PERQPIPNINI-GQVYDQRYADAE-VHYDALGNLAGFFGRNMPAHRHDRFFQVHYVKNGA 59 Query: 66 VSALMEEQVWEYDGPVVLTIHPSLVHGFDFSEQAVGFVLTVDPHVVFS---AGAGEGHGE 122 V ++E+ + GP+ P++ H F A G VLTV +V+S A G G Sbjct: 60 VRVYLDERQYLESGPMFFLTPPTVPHAFVTEADADGHVLTVRQQLVWSLTEAEPGLAPGP 119 Query: 123 LFSPLFLRPMAIELGRAPDLRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRL 182 +P + +E G A + R+ L L +ES A R+G L L R VM+ L+RL Sbjct: 120 QVAPACVALGNLE-GGAAEEAARLALLFEQLRSESMASRSGRQQALLALTRLVMISLLRL 178 Query: 183 EADHRSAELTGRGDFELFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHS 242 A+ +A D ++F RF AL+E+ + + W +++YA ++ +T +RLN +C ++A Sbjct: 179 SANSVAARPMRHEDLQIFQRFNALIEERYAEHWPLSLYASRIGVTEARLNDVCRRIADLP 238 Query: 243 AFDLAQQRLILEACRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTHVE 302 + L +RL+ E+ R L + V I Y+LGF+DPAYFSR F R+ G+TP YR+ + Sbjct: 239 SKRLVYERLMQESKRLLLFTGGSVNEICYQLGFKDPAYFSRFFVRYAGLTPSAYRQRQAD 298 >BMEII0641 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 307 Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 151/291 (51%), Gaps = 12/291 (4%) Query: 13 VPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVSALMEE 72 +P + LYGE + + +H E + +RS +H++ I+ H H FQ L++ SG + + Sbjct: 7 IPTYELYGEETDQKPDFWLHCETLYSRSSLHNFEISLHRHDNFFQFLYVESGTGNVNFDG 66 Query: 73 QVWEYDGPVVLTIHPSLVHGFDFSEQAVGFVLTV-DPHVVFSAGAGEGHGELFSPLFLRP 131 + + P + + P+ HGF FS VG ++TV P + F G G + +RP Sbjct: 67 VLHSFRTPCAIIVPPNFNHGFAFSRNIVGHIVTVLQPQMPFLES---GFGTSTADWMMRP 123 Query: 132 MAIELGRAPDLRERMETL-LRLLIAESAAPRTGHTLMLEWLARSVMLLLVR----LEADH 186 +++ A + L +R + +E + + MLE L +S ++ ++R L+ +H Sbjct: 124 KLVQMEGADEADLAFLALTMRHIQSEYQSRKMHKNSMLESLLKSSLVQIIRHALALQPEH 183 Query: 187 RSAELTGRGDFELFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDL 246 + + E R L+++HF++ V+ YA +L ++ + LNRL ++AG + Sbjct: 184 DTWQSYREPRIE---RLLELIDRHFREHRPVSFYAGQLGLSATHLNRLTRRVAGAPVQHM 240 Query: 247 AQQRLILEACRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYR 297 ++LI A R L +PS V +AY LGF DPAYFSR F++ G TP+ +R Sbjct: 241 IARKLIDMARRDLVAMPSSVQHVAYSLGFSDPAYFSRFFQKMTGETPRAFR 291 >STM1108 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sty Salmonella typhimurium LT2 Length = 298 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 127/260 (48%), Gaps = 17/260 (6%) Query: 50 HTHAGLFQVLFLMSGHVSALMEEQVWEYDGPVVLTIHPSLVHGFDFSEQAVGFVLTVDPH 109 H H FQ+ FL +G + +++ + P+ + PS+ H F + G VLTV Sbjct: 43 HRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREE 102 Query: 110 VVFS------AGAGEGHGELFSPLFLRPMAIELGRAPDLRERMETLLRLLIAESAAPRTG 163 +V+ G E G L + + L P+ ++ +L+ ES G Sbjct: 103 LVWPLLEVLYPGTREAFG-------LPGICLSLADKPNELAALKHYWQLIERESTEQLAG 155 Query: 164 --HTLMLEWLARSVMLLLVRLEADHRSAELTGRGDFELFSRFRALVEQHFKQQWQVAVYA 221 HTL+L LA++V LL+R A RG+ +LF RF L++ HF Q W V YA Sbjct: 156 CEHTLVL--LAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYA 213 Query: 222 DKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEACRKLTYVPSGVATIAYELGFQDPAYF 281 +L IT SRL +C + A L R + EA R L + + V IA++LGF+DPAYF Sbjct: 214 CELHITESRLTDICRRFANRPPKRLIFDRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYF 273 Query: 282 SRLFKRHMGVTPKEYRRTHV 301 +R F R G +P ++R+ V Sbjct: 274 ARFFNRLAGCSPSQFRQREV 293 >AGl645 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 327 Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 9/282 (3%) Query: 17 SLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVSALMEEQVWE 76 LYGE + H E + +RS +H + I H H+ Q+L++ G AL+E ++ Sbjct: 28 GLYGEEATQGTEFRFHCETLFSRSSLHRFEIGLHRHSAFLQILYIFGGEGDALLEGRIEP 87 Query: 77 YDGPVVLTIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGAGEGHGELFSPLFLRPMAIEL 136 PV + + P HGF FS G ++T+ P + ++ L F +P+ + L Sbjct: 88 IRPPVAIIVPPGFEHGFRFSRDIGGVIVTMLPGALPASVQA-----LLLRNFQQPVLLRL 142 Query: 137 GRAPDLRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADHRSAELTGRGD 196 R ++ + + + AE A G M+E +V+ LL R A E +G G Sbjct: 143 -RDFAEKDGLRSGFERISAEYEAREIGRDAMIEGQLATVVTLLSR--AARPLLETSGEGL 199 Query: 197 FEL-FSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEA 255 E F R +L+ +H ++ + YA KL ++ + LNRL ++G S L +R I A Sbjct: 200 AEQRFERLLSLIARHIREPQKAGFYAGKLGLSETHLNRLVRSVSGLSLQRLIAKRQIEIA 259 Query: 256 CRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYR 297 ++L + S V IA LGF DPAYF+R FKR G+TP+ +R Sbjct: 260 QQELIFTVSSVQMIAEGLGFADPAYFNRFFKRETGMTPRAWR 301 >PM1524 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pmu Pasteurella multocida Length = 334 Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 16/279 (5%) Query: 26 EDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVSALMEEQVWEYDGPVVLTI 85 E + +H E + + + H H +QV +L G ++ ++ + P Sbjct: 55 ESSSIIHYETFDNLALFYGRKSLVHFHDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFIT 114 Query: 86 HPSLVHGFDFSEQAVGFVLTVDPHVVFSAGAGEGHGELFSPL-----FLRPMAIELGRAP 140 PS+ HGF G VLT+ V+ +L L + PM IEL Sbjct: 115 PPSIPHGFYTDLDTHGHVLTIPQEFVW---------QLLESLKRDINYFYPMCIELSPQE 165 Query: 141 DLRE--RMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADHRSAELTGRGDFE 198 + ++ + E L LL E L A+ ++L + RL + + Sbjct: 166 EAQQIFKFEYLFNLLAGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELY 225 Query: 199 LFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEACRK 258 LF++F L+E +FK W++ Y D+L I+ S+LN +C + S L +R I EA RK Sbjct: 226 LFNQFNFLIEDNFKNNWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRK 285 Query: 259 LTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYR 297 L + + IAY+LGF+DPAYFSR F++ ++PK +R Sbjct: 286 LLFTQHSIYQIAYDLGFKDPAYFSRFFQKETQLSPKAFR 324 >AGl475 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 289 Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 47/97 (48%) Query: 202 RFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEACRKLTY 261 RF LV QH + W V YA L I+ RL + G S + L+ EA L Sbjct: 176 RFVLLVAQHKCEHWSVDDYARDLGISRDRLGSIIKNATGLSPQAYIHRELLSEAHDLLLN 235 Query: 262 VPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRR 298 VA IA+ LGFQDP YF+R F G +P +RR Sbjct: 236 SSLQVAEIAFRLGFQDPGYFNRFFTGKEGKSPGRFRR 272 >RSc1813 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 303 Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 2/167 (1%) Query: 135 ELGRAPDLRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADHRSAELTGR 194 +L +P +R E + R H+ E L+ +V LL LE + R Sbjct: 139 QLCASPAIRAIAEQIFRCRALAGVQQLFMHSKAFELLSLTVETLLTSLEGG--KPQTMQR 196 Query: 195 GDFELFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILE 254 D+ R R L+ W +A A + + +L L G+S Q++ + Sbjct: 197 RDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRMLYGNSVHAYLQEKRMQA 256 Query: 255 ACRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTHV 301 A LT + + + G+ +P++FS+LF+R+ G++P+EY R ++ Sbjct: 257 AAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQNL 303