BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0021.p (159 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus ra... 149 3e-36 RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia sol... 142 4e-34 CC2535 Non COG 138 6e-33 RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia sol... 135 3e-32 CC3169 Non COG 133 1e-31 mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium... 131 6e-31 NMB0573 [K] COG1522 Transcriptional regulators Nme Neisseria men... 129 2e-30 CC3573 Non COG 128 6e-30 NMA0756 [K] COG1522 Transcriptional regulators NmA Neisseria men... 128 6e-30 AGc3460 [K] COG1522 Transcriptional regulators Atu Agrobacterium... 127 8e-30 >DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus radiodurans Length = 195 Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 101/150 (67%) Query: 2 ELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLL 61 +LD TD +IL+ILQ ++ I+N ELA I L+P+PTL RV+RLE EG+I RYVAL DP L+ Sbjct: 42 DLDPTDRQILSILQRDARIANTELADEIGLTPAPTLRRVRRLEEEGVIHRYVALLDPKLV 101 Query: 62 GLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHF 121 + V V+V L++Q + F + A EV+E YL GD DYLL++ VP+L + F Sbjct: 102 NRDLMVMVRVTLDKQTKQGFQDFAEHMRARPEVLECYLCLGDTDYLLKVCVPNLDAYQRF 161 Query: 122 IVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 +VD L IPG++N S+ +KQ KY T+LP Sbjct: 162 LVDVLAAIPGVRNTDSTIVVKQEKYTTSLP 191 >RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum Length = 162 Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 5/156 (3%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 +ELD D +IL +LQ N ++NLE+A R+NLSPSP L R++RLE G+I +Y AL DP Sbjct: 4 VELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGK 63 Query: 61 LGLKVNVFVKVILERQGAEALAQ-----FETAVSAFDEVMEVYLMTGDEDYLLRIVVPDL 115 +GL ++ ++ V LE+QG + F AV+ + EV+ Y MTG+ DYLL++ V D+ Sbjct: 64 IGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDM 123 Query: 116 LTLEHFIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 FI D L P + +++SSFAL++IK TALP Sbjct: 124 DHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALP 159 >CC2535 Non COG Length = 194 Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 96/151 (63%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 M+L D +IL ILQE+ ISN++LA R+ LSPSP L RVK+LE+ G+I YVAL D Sbjct: 39 MKLTRADRKILQILQEDGKISNVDLAERVGLSPSPCLRRVKQLEASGLIRGYVALLDRRK 98 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 L V +V+V ++R EA F+ AV EV+ Y MTG DYLLR+VVP L Sbjct: 99 AKLDVLAYVEVQVDRHSEEAAEAFQQAVLREPEVVGCYAMTGGYDYLLRVVVPSLDAYAD 158 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 F + L K+P +K++RSSF L IK +TALP Sbjct: 159 FTMKRLLKMPAVKDVRSSFVLDTIKDQTALP 189 >RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum Length = 152 Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 97/151 (64%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 ME D D RIL+ LQ + + N+ELA + LSPSP L RV+ LE G+I RYVA+ +P Sbjct: 1 MEFDAIDRRILSALQRDGRLQNIELAKEVGLSPSPCLRRVRLLEEAGVIERYVAVLNPAK 60 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 +G ++VF ++ L+ Q A + F A+ EV+E +LM GD D+LLR+V DL Sbjct: 61 VGKGLSVFARIWLKGQDAATVDAFTAAIQQLPEVVECHLMAGDCDFLLRVVAADLEDYRQ 120 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 F + +LT+IPG++++++ +++IK +ALP Sbjct: 121 FQIQYLTRIPGVQSVKTEVPMQKIKLTSALP 151 >CC3169 Non COG Length = 201 Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/149 (42%), Positives = 95/149 (63%) Query: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 +D D +I+ LQ++ ++N ELA R+NLSPSP L RV+ LE+EG+I+ Y AL D G Sbjct: 50 MDAKDRQIIRELQKDGRLTNQELAERVNLSPSPCLRRVRNLEAEGVITGYTALVDQKAYG 109 Query: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 L + VFV+V L+R G + + FE AV+ D++++ +L+ G +DYLLR++V L E F+ Sbjct: 110 LPITVFVRVRLDRHGQDLIKGFEDAVARIDQILDCFLLAGGDDYLLRVIVDSLEAYEDFM 169 Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 L IPGI +I +SFA +K P Sbjct: 170 RRRLHAIPGIASIDTSFAYGVVKQTRVFP 198 >mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti Length = 155 Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 92/150 (61%) Query: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 LD DL+I+ LQ+N+ + +LA + LSPSP RV+ LE G+I Y + D LG Sbjct: 6 LDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLG 65 Query: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 L ++ F + LERQ + L +F AV + EV++ YLMTG DYL+RIVV DL E FI Sbjct: 66 LPISAFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFI 125 Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALPT 152 D LT++ I +I SSFAL Q+K ALP Sbjct: 126 KDKLTRLDNIASIESSFALGQVKRSEALPA 155 >NMB0573 [K] COG1522 Transcriptional regulators Nme Neisseria meningitidis MC58 Length = 187 Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 + LD TD++IL +LQEN ++N+EL+ R+ LSPSP L R+K+LE GI+ +Y AL P Sbjct: 31 LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPES 90 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 + L + F++V + R+ +A F +V + EV+ + +TG+ DYLL+ D+ H Sbjct: 91 VNLGLQAFIRVSI-RKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 149 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 F++D L G+++ +SSF LK+IK+ T+LP Sbjct: 150 FVLDTLLSHHGVQDAQSSFVLKEIKHTTSLP 180 >CC3573 Non COG Length = 157 Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 92/151 (60%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 +ELD+ D ++L LQ S +EL ++LS S L RV+ LE +G+ISRY A+ D Sbjct: 6 VELDSFDRKLLTALQRRGRASYVELGEAVSLSESACLRRVRALEEQGVISRYAAVIDERA 65 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 +GL ++VFV V L Q AL+ FE A++ EV E YLMTG DYLLR+VV D+ LE Sbjct: 66 VGLPLSVFVTVTLSSQAESALSAFEKAIATVREVAECYLMTGGSDYLLRLVVRDVDDLER 125 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 LT+IPG+ + SS A++ + + LP Sbjct: 126 VHAQELTRIPGVVRVSSSIAMRTVVKRVELP 156 >NMA0756 [K] COG1522 Transcriptional regulators NmA Neisseria meningitidis Z2491 Length = 160 Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 + LD TD++IL +LQEN ++N+EL+ R+ LSPSP L R+K+LE GI+ +Y AL P Sbjct: 4 LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPES 63 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 + L + F++V + R+ +A F +V + EV+ + +TG+ DYLL+ D+ H Sbjct: 64 VNLGLQAFIRVSI-RKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 122 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 F++D L G+++ +SSF LK+IK T+LP Sbjct: 123 FVLDTLLSHHGVQDAQSSFVLKEIKQTTSLP 153 >AGc3460 [K] COG1522 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 162 Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 1/149 (0%) Query: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 +D D +IL ILQE+S+++ +LA ++ LS +P R++++E +G+I R VAL DP + Sbjct: 1 MDRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVN 60 Query: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 KV VFV + E L +F VS F EV+E Y M+GD DYLLR+VVPD+ + F Sbjct: 61 TKVTVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFY 120 Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 + KI I+++ S+FA++QIKY T LP Sbjct: 121 KRMIAKIE-IRDVSSAFAMEQIKYTTELP 148