BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0004.p (173 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemo... 189 3e-48 PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Paste... 187 1e-47 NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neis... 182 4e-46 NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neis... 182 4e-46 VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibri... 180 1e-45 BU545 [L] COG0629 Single-stranded DNA-binding protein Buc Buchne... 176 2e-44 ssb [L] COG0629 Single-stranded DNA-binding protein Eco Escheric... 176 3e-44 ECs5041 [L] COG0629 Single-stranded DNA-binding protein Ecs Esch... 176 3e-44 Zssb [L] COG0629 Single-stranded DNA-binding protein EcZ Escheri... 173 1e-43 RSc0422 [L] COG0629 Single-stranded DNA-binding protein Rso Rals... 171 1e-42 >HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemophilus influenzae Length = 168 Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/174 (59%), Positives = 121/174 (69%), Gaps = 7/174 (4%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MA +NKVIIVG+LG DPE R MPNG+AV NI+VAT+ESW D+NTGE++E+TEWHRI FYR Sbjct: 1 MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSR-QGGGGGGM 119 + AEI G+YL+KGSQ+YVEGRL+TRKWQD+ G +RYTTEI D MQMLG R Q GG G Sbjct: 61 RQAEICGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGN 120 Query: 120 DEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 D GG SY RQ+ G S QQ A + P DDDIPF Sbjct: 121 D---MGGAPQSSY---QARQTNNGNSYQSSRPAPQQAAPQAEPPMDGFDDDIPF 168 >PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Pasteurella multocida Length = 166 Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 122/179 (68%), Gaps = 19/179 (10%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MA VNKVIIVGNLG DPE R MPNGEAV NI+VAT+ESW DKNT E++E+TEWHRI FYR Sbjct: 1 MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 + AE+AG+YL+KGS++YVEGRL+TRKWQD+ G +RYTTEI D +QML SR Sbjct: 61 RQAEVAGEYLRKGSKVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLDSR----NERQQ 116 Query: 121 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAP-NFSDMD-----DDIPF 173 GGY AP+ +A G G + +PA +PAP N MD D+IPF Sbjct: 117 TGGYAP------QTAAPQYNAPTGSYGAQPS---RPATKPAPQNEPPMDMGFEEDNIPF 166 >NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neisseria meningitidis MC58 Length = 174 Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/175 (53%), Positives = 117/175 (66%), Gaps = 6/175 (3%) Query: 3 SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62 S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL Sbjct: 2 SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60 Query: 63 AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMDEG 122 AEIAGQYLKKG +Y+EGR+Q+RK+Q K+G+ER +I+A+ M+MLG R GG E Sbjct: 61 AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120 Query: 123 GYGGGGGG----SYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 GYG + P A +APR+QP AP D+DDDIPF Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174 >NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neisseria meningitidis Z2491 Length = 174 Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/175 (53%), Positives = 117/175 (66%), Gaps = 6/175 (3%) Query: 3 SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62 S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL Sbjct: 2 SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60 Query: 63 AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMDEG 122 AEIAGQYLKKG +Y+EGR+Q+RK+Q K+G+ER +I+A+ M+MLG R GG E Sbjct: 61 AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120 Query: 123 GYGGGGGG----SYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 GYG + P A +APR+QP AP D+DDDIPF Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174 >VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibrio cholerae Length = 177 Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/181 (54%), Positives = 123/181 (67%), Gaps = 12/181 (6%) Query: 1 MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58 MAS VNKVI++GNLG+DPE RYMP+G AV NI +AT+E+W+DK TGE+KE TEWHR+T Sbjct: 1 MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60 Query: 59 YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD----TMQMLGSRQGG 114 Y KLAE+AG+YL+KGSQ+Y+EG+LQTRKWQD+ G +RY+TE++ MQMLG R Sbjct: 61 YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQ 120 Query: 115 GGGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQ--QPAQRPAPNFSDMDDDIP 172 GG G GS+ G P+Q A SAP+Q QP P D DDDIP Sbjct: 121 GGMPAQGGMNVPAQQGSW--GQPQQPAKQHQPMQQSAPQQYSQPQYNEPP--MDFDDDIP 176 Query: 173 F 173 F Sbjct: 177 F 177 >BU545 [L] COG0629 Single-stranded DNA-binding protein Buc Buchnera sp. APS Length = 171 Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/178 (51%), Positives = 116/178 (65%), Gaps = 12/178 (6%) Query: 1 MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58 MAS VNKVI++G+LG+DPE RYMPNG AV N+ +AT+E+WKDKNTGE KE TEWHRI Sbjct: 1 MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVL 60 Query: 59 YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD---TMQMLGSRQGGG 115 + KLAEIAG+YL+KGSQ+Y+EG LQTRKWQD+ G+ERYTTEII + TMQMLG+R Sbjct: 61 FGKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEIIVNIGGTMQMLGNRNS-- 118 Query: 116 GGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 + S G + A + + +P+ D DD+IPF Sbjct: 119 ----NLQAMTVNDKNSTGIKIKKTDAVEFDKKIETHESNKDLTH-SPSEIDFDDEIPF 171 >ssb [L] COG0629 Single-stranded DNA-binding protein Eco Escherichia coli K12 Length = 178 Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/178 (54%), Positives = 118/178 (66%), Gaps = 5/178 (2%) Query: 1 MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58 MAS VNKVI+VGNLG+DPE RYMPNG AV NI +AT+ESW+DK TGE KE TEWHR+ Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60 Query: 59 YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD---TMQMLGSRQGGG 115 + KLAE+A +YL+KGSQ+Y+EG+L+TRKW D+ G +RYTTE++ + TMQMLG RQGGG Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120 Query: 116 GGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 G G GG P+ GG S + PA D DDDIPF Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178 >ECs5041 [L] COG0629 Single-stranded DNA-binding protein Ecs Escherichia coli O157:H7 Length = 178 Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/178 (54%), Positives = 118/178 (66%), Gaps = 5/178 (2%) Query: 1 MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58 MAS VNKVI+VGNLG+DPE RYMPNG AV NI +AT+ESW+DK TGE KE TEWHR+ Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60 Query: 59 YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD---TMQMLGSRQGGG 115 + KLAE+A +YL+KGSQ+Y+EG+L+TRKW D+ G +RYTTE++ + TMQMLG RQGGG Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120 Query: 116 GGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 G G GG P+ GG S + PA D DDDIPF Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178 >Zssb [L] COG0629 Single-stranded DNA-binding protein EcZ Escherichia coli O157:H7 EDL933 Length = 178 Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/178 (53%), Positives = 117/178 (65%), Gaps = 5/178 (2%) Query: 1 MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58 MAS VNKVI+VGNLG+DPE RYMPNG AV NI +AT+ESW+DK TGE KE TEWHR+ Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60 Query: 59 YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD---TMQMLGSRQGGG 115 + KLAE+A +YL+KGSQ+Y+EG+L+TRKW D+ G +RYTTE++ + TM MLG RQGGG Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMXMLGGRQGGG 120 Query: 116 GGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 G G GG P+ GG S + PA D DDDIPF Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178 >RSc0422 [L] COG0629 Single-stranded DNA-binding protein Rso Ralstonia solanacearum Length = 178 Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/179 (60%), Positives = 129/179 (72%), Gaps = 7/179 (3%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLG DPETRYMP+G+AVTNI VATT+ +KDK +GE +E TEWHRI F+ Sbjct: 1 MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFG 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSR------QGG 114 +LAEIAG+YLKKGSQ+YVEGRL+TR+W+ K+G ++Y+TEI+A+ MQMLGSR GG Sbjct: 61 RLAEIAGEYLKKGSQVYVEGRLKTRQWE-KDGQKQYSTEIVAEQMQMLGSRQGMGGEGGG 119 Query: 115 GGGGMDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 GGGG G GGGG G G GGG + Q P+ F DMDDDIPF Sbjct: 120 GGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGGARRQQAPSNGFEDMDDDIPF 178