BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0194.p         (326 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all3325 [R] COG3497 Phage tail sheath protein FI Nos Nostoc sp. ...   116   9e-26

>all3325 [R] COG3497 Phage tail sheath protein FI Nos Nostoc sp. PCC 7120
          Length = 484

 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 29/206 (14%)

Query: 4   YKTPGVYVVEKNAFPNSVVEVATAVPAFIGYTEYA-------SNKGTPLANKAWRISSMA 56
           YKTPGVY+ E + FP S+ +V TA+PAFIGYT+ A             L  +  RI+S+ 
Sbjct: 5   YKTPGVYIEEISKFPPSIAQVETAIPAFIGYTQIAKVGVENFHTDADNLILRPVRITSLL 64

Query: 57  EFHAYFGGAPRSSFTLKAQDAPTDAADFSVTAKDTNKRVDYLIERDDKAYL-------LY 109
           E+  +FG A              +     V  +DT      L ER   A +       LY
Sbjct: 65  EYEQFFGKA-------------INETTIQVVIQDTTDSRGNLTERKASARITSPSPHNLY 111

Query: 110 YSMLFFFQNGGGPCYIVSVGTYAD-GDIDAGKIKGGIEVLLKEQEPTMVVTPDAVSLSSA 168
           YSM  +F NGGGPCYIVSVG  ++ G I    ++ G+  + KE E T++V P++ SLS  
Sbjct: 112 YSMQAYFANGGGPCYIVSVGPMSNTGTIQLEALQNGLAEVAKEDEVTLLVFPESQSLSDE 171

Query: 169 DCQDVQQAALMHCGVKMRNRIALLDV 194
           +   +  AAL  C   +++R  ++D+
Sbjct: 172 NYAALMSAALEQCA-NLQDRFTVMDL 196