BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0130.p (122 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa 101 5e-22 VCA1096 [T] COG0784 FOG Vch Vibrio cholerae 97 9e-21 BB0570 Non COG 91 5e-19 CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides 83 2e-16 RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum 79 3e-15 AGc3010 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58... 75 3e-14 SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti 75 3e-14 all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 75 5e-14 sll1296_2 [T] COG0784 FOG Syn Synechocystis 75 5e-14 lin2728 [TK] COG0745 Response regulators consisting of a CheY-li... 74 6e-14 >PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 121 Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 78/117 (66%), Gaps = 1/117 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 IL+VDDS+++R + LK G +V A DG++GL K + + LV +D NMPNMDGL+ Sbjct: 5 ILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSK-SYSLVFTDQNMPNMDGLS 63 Query: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 + +R+ G SV I+MLTTE+S MK++G++AG GW+VKPF +L +K++ Sbjct: 64 LIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120 >VCA1096 [T] COG0784 FOG Vch Vibrio cholerae Length = 125 Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 1/120 (0%) Query: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMD 60 MA++L VDDS ++R V L+ G +V A DGR+ L+K + +++SDVNMP M Sbjct: 7 MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQ-KARFDVIISDVNMPVMT 65 Query: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 G + +R + I+MLTTE SP K+ GKA G GW+VKPF E +L T ++++ Sbjct: 66 GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125 >BB0570 Non COG Length = 124 Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 7/122 (5%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLK-----GDPAIKLVVSDVNMP 57 +ILV+DD+ +R V L++NG V+ A DG +G+ + K GD LV++D+NMP Sbjct: 4 RILVIDDNRAIRQSVAYILEQNGFGVSEAKDGLEGVLRFKEAVGQGDKDFDLVITDINMP 63 Query: 58 NMDGLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFK 117 N+DG+ + ++IR E G + V I++LTTE+ + G+ AG GW+VKPF EA++ T Sbjct: 64 NLDGIGVIKQIR-EFG-SFVPILVLTTESEQSKVDEGRKAGATGWLVKPFNPEALMKTIS 121 Query: 118 KL 119 K+ Sbjct: 122 KI 123 >CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides Length = 121 Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 +L VDDS T+R + L G +V AVDG GL L ++++D+NMP +DG Sbjct: 5 VLTVDDSRTMRDMLRMALAGAGFNVVEAVDGEHGLEVLSAHRP-DVIITDINMPKLDGFG 63 Query: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKL 119 E +R + ++ I++LTTE+ P K+R + AG GWIVKPF E ++ +++ Sbjct: 64 FIEAVRVDDDYRAIPILVLTTESDPAKKQRAREAGATGWIVKPFNPEKLVDAIRRV 119 >RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum Length = 137 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLK--GDPAIKLVVSDVNMPNMD 60 ILVVDDS+++R + L+ G V A DG L ++ D + LV++D MP MD Sbjct: 5 HILVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQADGSHHLVITDQVMPAMD 64 Query: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 GLT+ +R+ A I+MLTTE ++++ +AAG G++ KPF + + + +L+ Sbjct: 65 GLTLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSVMQLL 124 >AGc3010 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGL 62 +L+VDDS T RA + LK+ V+LA G L L+ +P I LVV+D NMP++DG Sbjct: 170 HVLIVDDSPTARALLSSRLKRYNFRVSLADSGAKALEILRANPDIGLVVTDYNMPDIDGF 229 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGE 110 + +IR+ G+ + II +++ + ++ R AG ++++PF E Sbjct: 230 ELTRRIRTVRGSHELRIIGVSSSTNRLLSARFLKAGGNDFMLRPFIDE 277 >SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti Length = 121 Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKL-KGDPAIKLVVSDVNMPNMDG 61 ++L VDDS T+R + L G + A DG +GL KL +P + +V+D+NMP +DG Sbjct: 4 RVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLDTANPDV--IVTDINMPRLDG 61 Query: 62 LTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPF 107 E +R +V I++LTTE+ K R + AG GWIVKPF Sbjct: 62 FGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPF 107 >all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 167 Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 ILVVDD+ ++R + L+K+G V A +G + L +L+ P I+LVVSD+ MP M+G Sbjct: 38 ILVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQLQRHPEIQLVVSDLEMPRMNGFE 97 Query: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVGA 122 I+ + +I+LT+ ++ ++ K G K ++ KP+ ++ + L+ + Sbjct: 98 FLSHIQHNPQYTKIPVIILTSRSAEKHRQLAKELGAKAYLSKPYLEHELINHIESLINS 156 >sll1296_2 [T] COG0784 FOG Syn Synechocystis Length = 126 Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKL-KGDPAIKLVVSDVNMPNMDGL 62 ILV+DDS TVR + L + DG++ L + + I L + D+ MPNMDG Sbjct: 4 ILVIDDSVTVRRTLQRVLG-GSFRLIQCRDGKEAWDLLNRQNQGIDLALCDIEMPNMDGF 62 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121 ++ + +R+ S+ ++MLT+ +P+ + R KA G G++ KPF+ +L T + + Sbjct: 63 SLLQLVRAHRVWHSLTVVMLTSRENPLHRNRAKALGADGYLTKPFQPNQLLSTIDQFLA 121 >lin2728 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Lin Listeria innocua Length = 225 Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMD 60 M QILVVDD + VG +L+ G V A DG +G K+ + L V DV MPNMD Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEG-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 G + +K+R + + +IMLT +++ K RG G ++ KPF+ E ++ + L+ Sbjct: 60 GFELCKKLR--ISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALL 117