BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0072.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3209 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Pae Pse...   111   4e-25
STM1733 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Sty Sa...    95   4e-20
ykgJ [R] COG0727 Predicted Fe-S-cluster oxidoreductase Eco Esche...    91   1e-18
ZykgJ [R] COG0727 Predicted Fe-S-cluster oxidoreductase EcZ Esch...    91   1e-18
ECs0318 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Ecs Es...    91   1e-18
XF1964 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Xfa Xyl...    81   6e-16

>PA3209 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Pae Pseudomonas
           aeruginosa
          Length = 123

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 23  SPDNPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIA 82
           S DNPC  CG CCAHFRVSFY GE     GG+VP ELT +++  +  M GTE+   RC+ 
Sbjct: 2   STDNPCLTCGACCAHFRVSFYWGECRSA-GGVVPDELTVRISPQMVAMSGTENKPARCVG 60

Query: 83  LVGELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPALAALPPQQAAP 142
           L+GE+G  GV C++Y +R STCREF    A+G+PNP C   R A GLP L        AP
Sbjct: 61  LLGEVG-CGVRCTVYEQRSSTCREFEAAWANGQPNPACDAARAAYGLPPLTPPLQPHLAP 119

Query: 143 GLPA 146
           G  A
Sbjct: 120 GRVA 123


>STM1733 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Sty Salmonella
           typhimurium LT2
          Length = 134

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIALVG 85
           NPC  CG CCA+FRVSFY  E  D   G VP  LT  V   L CM GT      C AL+G
Sbjct: 5   NPCMTCGACCAYFRVSFYWAE-GDDASGRVPASLTEPVTPFLRCMAGTNQKQPHCKALIG 63

Query: 86  ELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPAL 132
             G+  V C+IY  RPSTCREFS     G  N  C + R   GLP L
Sbjct: 64  TPGE-NVSCAIYENRPSTCREFSISGEGGEVNEACNRARARYGLPPL 109


>ykgJ [R] COG0727 Predicted Fe-S-cluster oxidoreductase Eco Escherichia
           coli K12
          Length = 109

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIALVG 85
           NPC  CG CCA FRVSFY  E  D  GG +P  LT +++    CM GT   + RCIAL G
Sbjct: 5   NPCMTCGACCAFFRVSFYWAEADDA-GGTIPARLTEQISPFHRCMSGTNQKNPRCIALAG 63

Query: 86  ELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPAL 132
             G+    C+IY  R STCREF+    +G  N  C + R   GL  L
Sbjct: 64  TPGKNAC-CTIYKNRSSTCREFAMSGENGVVNEACNRARAKYGLTPL 109


>ZykgJ [R] COG0727 Predicted Fe-S-cluster oxidoreductase EcZ Escherichia
           coli O157:H7 EDL933
          Length = 109

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIALVG 85
           NPC  CG CCA FRVSFY  E  D  GG +P  LT +++    CM GT   + RCIAL G
Sbjct: 5   NPCMTCGACCAFFRVSFYWAEADDA-GGTIPARLTEQISPFHRCMSGTNQKNPRCIALAG 63

Query: 86  ELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPAL 132
             G+    C+IY  R STCREF+    +G  N  C + R   GL  L
Sbjct: 64  TPGKNAC-CTIYKNRSSTCREFAMSGENGVVNEACNRARAKYGLTPL 109


>ECs0318 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Ecs Escherichia
           coli O157:H7
          Length = 109

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIALVG 85
           NPC  CG CCA FRVSFY  E  D  GG +P  LT +++    CM GT   + RCIAL G
Sbjct: 5   NPCMTCGACCAFFRVSFYWAEADDA-GGTIPARLTEQISPFHRCMSGTNQKNPRCIALAG 63

Query: 86  ELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPAL 132
             G+    C+IY  R STCREF+    +G  N  C + R   GL  L
Sbjct: 64  TPGKNAC-CTIYKNRSSTCREFAMSGENGVVNEACNRARAKYGLTPL 109


>XF1964 [R] COG0727 Predicted Fe-S-cluster oxidoreductase Xfa Xylella
           fastidiosa 9a5c
          Length = 127

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 26  NPCTACGGCCAHFRVSFYCGELSDGLGGMVPVELTSKVNDSLACMKGTEHGHGRCIALVG 85
           +PC +CG CCA+FRVSF+  E    LGG VP+ELT  +      M GT   H RCIAL  
Sbjct: 3   HPCLSCGACCAYFRVSFHWSEADPALGGNVPIELTEPLRIHERVMHGTSQSHPRCIALDA 62

Query: 86  ELGQPGVGCSIYPRRPSTCREFSPWEADGRPNPVCQQRRQALGLPALA 133
           E+G     C+I+ RRPS C         G  +  C   R+A GL  L 
Sbjct: 63  EIGYRS-RCTIHERRPSVCAAVPASLEFGTRSQQCDTSRRAHGLHLLT 109