BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0068.p (239 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF0322 [TK] COG0745 Response regulators consisting of a CheY-lik... 218 1e-56 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 202 5e-52 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 194 2e-49 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 186 6e-47 BMEII1014 [TK] COG0745 Response regulators consisting of a CheY-... 171 1e-42 ECs3907 [TK] COG0745 Response regulators consisting of a CheY-li... 171 1e-42 ZygiX [TK] COG0745 Response regulators consisting of a CheY-like... 171 1e-42 RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li... 171 2e-42 RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 170 3e-42 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 170 3e-42 >XF0322 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 231 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/216 (51%), Positives = 148/216 (68%), Gaps = 1/216 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNG-AHANRRLSESYDLLILDVMLPQQDGF 59 MR+LL+ED AD+A+AI+ + R GH V+W+S+G A A + +DL++LD+ LP DG Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHGHAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSLDGL 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 LL +LR RG TPVLMLTA +E+RV L++GADDYL KPFDFRE +AR RVLLRR+ Sbjct: 61 QLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ ++ + D + LDG+PI+L RE LLEI+ AR G+I KDE+ + LF Sbjct: 121 GSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGY 215 DDN N++E YVARLR+KL AA I T+RG GY Sbjct: 181 FDDNAGPNAIELYVARLRRKLEAAPLRIVTVRGAGY 216 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 114/220 (51%), Positives = 147/220 (66%), Gaps = 5/220 (2%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRILLVED +AE++V L G TV+ +G A+ L SE Y L ILDV LP+ DGF Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRS- 118 +L +LR RG+ PVLMLTA EV++RV L+LGADDYL KPF+ EL+AR++ LLRRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 119 -GGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRL 177 GGE L C L D +R +LD QP+ LT RE +LE + ARPGR+ +K++L ++ Sbjct: 121 LGGE--QLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQV 178 Query: 178 FTVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 F +D+ SA+++E YV RLRKKL A I T RGLGY L Sbjct: 179 FGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 146/218 (66%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRILLVED +AE + T L G+ V+ S+GA A+ + ES+DL+ILD+ LP+ DG Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L+ +R R VL+LTA EERV+ LDLGADDYL+KPFD E +AR+RVLLRR Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G +++ N+S+D SRS + G PIE+ RE+ LLE++ R G++ KD ++ L Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 +DD+ S N++EQYV+RLRK+LA +RT RG+GY L Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYL 218 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 147/218 (67%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 +RILLVED ++E + L G+ V+ S+GA A+ ++ ES+DL+ILD+ LP+ DG Sbjct: 20 LRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 79 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L+ +R+R VL+LTA EE+V+ LDLGADDY++KPFD E +AR+RVLLRR+ Sbjct: 80 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 139 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ L + D SR+ + DG+P+++ REV LLE++ R G++ K+ ++ L Sbjct: 140 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 199 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 DD+ SAN++EQYV+RLRK+LA ++T RG+GY L Sbjct: 200 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYL 237 >BMEII1014 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 225 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 3/218 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRI+L+ED + A+ H+ GH V+W S A+ + S YDL++LD+MLP G Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQGL 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 S L+ LRT+G TPV++LTA ++ +R++ L+ GADDYL KPFD EL AR+ + RR Sbjct: 61 SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G L+ L ID ++S DG+ + LT RE LLE PG+ +K +L + L++ Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 D +N++E +V+RLRKKL A E T+RG+GY+L Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHAIIE--TVRGIGYRL 216 >ECs3907 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 219 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 3/218 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRILL+ED + + I T L+++G +V+W + G L S YD +ILD+ LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L++ R +GQ PVL+LTA +EERV L LGADDYL KPF E+ AR+ L+RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G+++N L N+ +D R ATL G+P+ L +E LLE++ GR+ + + ++L+T Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 D+ ++N+VE +V LR+KL + IRT+ G+GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDF--IRTVHGIGYTL 216 >ZygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 3/218 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRILL+ED + + I T L+++G +V+W + G L S YD +ILD+ LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L++ R +GQ PVL+LTA +EERV L LGADDYL KPF E+ AR+ L+RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G+++N L N+ +D R ATL G+P+ L +E LLE++ GR+ + + ++L+T Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 D+ ++N+VE +V LR+KL + IRT+ G+GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDF--IRTVHGIGYTL 216 >RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 232 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 144/221 (65%), Gaps = 4/221 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANR----RLSESYDLLILDVMLPQQ 56 MRIL+ ED A +A+ + L + G+ V+ ++GA A+ + +++YDLLILDV LP+ Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 57 DGFSLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLR 116 G +L++LR+RG PVL+LTA V+ERV+ LDLGADDY+ KPF EL+AR+R L+R Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 117 RSGGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDR 176 R G L+ L+ D+ R A + Q ++L+ RE+ LLEI+ +R GR+ +K++L+D Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDH 180 Query: 177 LFTVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 L + S N++E YV RLRKK+ I T+RGLGY L Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCL 221 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 142/218 (65%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 M++LL+ED A +A+ + L R TV+ S+G A+ L ++ YD+++LD+ LP G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++LQ+LR R PV++LTA ++++V L GADDYLVKPF+ REL ARI+VL+RR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 + L C +LS SR+ L G+P+ L RE T+LEI+ + GR +K L++ +F Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 ++D+ S ++E Y+ RLRKKL +A I TLRGLGY L Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLL 218 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 3/218 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRL-SESYDLLILDVMLPQQDGF 59 MRILL+ED + + I T L+++G +V+W + G L S YD +ILD+ LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 +L++ R +GQ PVL+LTA + ERV L LGADDYL KPF E+ AR+ L+RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G+++N L N+ +D R ATL G+P+ L +E LLE++ GR+ ++ + ++L+T Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 D+ ++N+VE +V LR+KL + IRT+ G+GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDF--IRTVHGIGYTL 216