BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0054.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   144   1e-34
AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archae...   114   1e-25
PA1202 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    64   2e-10
PA2419 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    60   3e-09
STM3761 [Q] COG1335 Amidases related to nicotinamidase Sty Salmo...    58   9e-09

>PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 180

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 3/174 (1%)

Query: 1   MLIDARQSVLLIVDLQQKLLPAIHEGPQVLAEAVRMARIARLLGLPVLATEQMPDKLGPN 60
           MLI A  S LL+VD+Q++LLPAI +GP ++  +  + R+AR L +PVLA+EQ    LGP 
Sbjct: 1   MLIRAATSTLLVVDIQERLLPAIDDGPALVEYSQWLLRVARALDVPVLASEQYSKGLGPT 60

Query: 61  HPDIAGLCEST--LAKQHFDACADGLATTLPP-QTRQIIVSGCEAHICVLQTALSLLQAG 117
              +    E T  L K  F A ADG     P    RQ +V G EAH+CVLQT L LL  G
Sbjct: 61  VAALRDELEPTQILEKLDFSAAADGALLRAPGGDRRQFVVCGSEAHVCVLQTVLDLLGRG 120

Query: 118 YQVYPLLQACGSRRPADRDAAFARLRGAGAVPVTLEMVAYEWLGQSSHPQFREV 171
            +V+ + +A GSRRP+D+  A  R+R AGA+ V+ EMVA+EW+ ++   +FRE+
Sbjct: 121 REVFVVEEAIGSRRPSDKALAVERMRQAGAMIVSREMVAFEWMERAGSDRFREI 174


>AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archaeoglobus
           fulgidus
          Length = 170

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 8/171 (4%)

Query: 10  LLIVDLQQKLLPAIHEGPQVLAEAVRMARIARLLGLPVLATEQMPDKLGPNHPDIAGLCE 69
           L++VD+Q+KL P I    ++L   V++ +    L  PV+ TEQ+  KLG    ++A   E
Sbjct: 3   LVVVDVQEKLAPHIEGIEEMLKRTVKLVKAIVALKQPVIFTEQI--KLGKTVDELAEYAE 60

Query: 70  STLAKQHFDACADG----LATTLPPQTRQIIVSGCEAHICVLQTALSLLQAGYQVYPLLQ 125
             + K  F    D         L P+  ++I++G EAHICVLQTA+ + +AGY VY +  
Sbjct: 61  EPIVKSTFSCYKDENFRRKIEELKPE--KVILAGIEAHICVLQTAIDMKRAGYDVYVVAD 118

Query: 126 ACGSRRPADRDAAFARLRGAGAVPVTLEMVAYEWLGQSSHPQFREVLKLVK 176
             GSR+  D++ A  RL G G    T E + YE L  + HP FRE+L++VK
Sbjct: 119 CTGSRKAEDKEIALMRLAGEGIKLTTWESIVYELLESAEHPAFREILQIVK 169


>PA1202 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 205

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 3   IDARQSVLLIVDLQQKLLPAIHE-GPQVLAEAV-RMARIARLLGLPVLATEQMPDKLGPN 60
           +D   + +L VD Q  LL  + +  P      V  +A IAR   LP + T    D  GPN
Sbjct: 8   LDKNDAAVLFVDHQAGLLSLVRDFSPDEFKNNVLALADIARFFNLPTILTTSFED--GPN 65

Query: 61  HPDIAGLCE-----STLAK-QHFDAC--ADGLATTLPPQTRQIIVSGCEAHICVLQTALS 112
            P +  L E       +A+  + +A    D +        +Q+I++G    +CV    LS
Sbjct: 66  GPLVPELKEMFPQAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTDVCVAFPTLS 125

Query: 113 LLQAGYQVYPLLQACGSRRPADRDAAFARLRGAGA 147
            L+ G+ V+ +  A G+  P  RDAA+AR+  AGA
Sbjct: 126 ALEEGFDVFVVTDASGTFNPVVRDAAWARMTAAGA 160


>PA2419 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 226

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 3   IDARQSVLLIVDLQQKLLPAIHEGP--QVLAEAVRMARIARLLGLPVLATEQMPDKLGPN 60
           ID   + +L++D Q  L   + + P  ++ A A  +A++A L  +PV+ T  +P   GPN
Sbjct: 14  IDPANAAMLLIDHQSGLFQTVKDMPMTELRANATTLAKVATLAKIPVITTASVPQ--GPN 71

Query: 61  HPDIAGLCESTLAKQHFDACADGLATTLP--------PQTRQIIVSGCEAHICVLQTALS 112
            P I  + E+    Q+     +  A   P           +Q+I++G    +C+   +++
Sbjct: 72  GPLIPEIHEAAPHAQYVARKGEINAWDNPEFVAAVKATGKKQLIIAGTITSVCMAFPSIA 131

Query: 113 LLQAGYQVYPLLQACGSRRPADRDAAFARLRGAGAVPVTLEMVAYE 158
            +  GYQV+ ++ A G+     ++   AR+  AG VP+    V  E
Sbjct: 132 AVHDGYQVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTAAVCSE 177


>STM3761 [Q] COG1335 Amidases related to nicotinamidase Sty Salmonella
           typhimurium LT2
          Length = 226

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 3   IDARQSVLLIVDLQQKLLPAIHEGP--QVLAEAVRMARIARLLGLPVLATEQMPDKLGPN 60
           IDA  +V+L++D Q  L   + + P  ++ A A  +A+IA L  +PV+ T  +P   GPN
Sbjct: 14  IDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQ--GPN 71

Query: 61  HPDIAGL------CESTLAKQHFDAC--ADGLATTLPPQTRQIIVSGCEAHICVLQTALS 112
            P I  +       +    K   +A   AD +        + +I++G    +C+   A+S
Sbjct: 72  GPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAIS 131

Query: 113 LLQAGYQVYPLLQACGSRRPADRDAAFARLRGAGAVPVTLEMVAYE 158
            +  GY+V+ ++ A G+     ++   AR+  AG VP+    VA E
Sbjct: 132 AVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASE 177