BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0047.p (287 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella... 309 6e-84 AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacter... 301 1e-81 RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia ... 291 9e-79 BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus s... 287 2e-77 PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas... 286 5e-77 SA0410 [R] COG0523 Putative GTPases (G3E family) Sau Staphylococ... 273 3e-73 BH1790 [R] COG0523 Putative GTPases (G3E family) Bha Bacillus ha... 271 1e-72 XF1830 [R] COG0523 Putative GTPases (G3E family) Xfa Xylella fas... 262 5e-70 Cgl0672 [R] COG0523 Putative GTPases (G3E family) Cgl Corynebact... 224 1e-58 alr1093 [R] COG0523 Putative GTPases (G3E family) Nos Nostoc sp.... 160 2e-39 >BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella melitensis Length = 400 Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 151/208 (72%), Positives = 178/208 (85%) Query: 15 RRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTE 74 +RLPVTVLSGFLGAGKTTLLNH+L+NRE RRVAVIVNDMSE+N+DAAL+R+GGADLSRTE Sbjct: 3 KRLPVTVLSGFLGAGKTTLLNHVLNNRENRRVAVIVNDMSEINVDAALIREGGADLSRTE 62 Query: 75 EKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEDGA 134 E+LVEM+NGCICCTLR+DLL EV +LA + RFD L+IESTGISEPLPVA TF F DE G Sbjct: 63 EQLVEMTNGCICCTLRDDLLKEVSQLAAQGRFDYLLIESTGISEPLPVAATFEFRDERGK 122 Query: 135 SLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIV 194 SLSD ARLDTMVTVVDA NFLKDY+S D L RG+S+GEED RT+VDLL+EQIEF +V+V Sbjct: 123 SLSDGARLDTMVTVVDAANFLKDYASGDFLRDRGESLGEEDERTLVDLLVEQIEFANVVV 182 Query: 195 LNKLDLVAADDLERLHAILHKLNPRARI 222 LNK+ +V+ ++ ++ LNP ARI Sbjct: 183 LNKISMVSKEECALARKVIRSLNPDARI 210 >AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/228 (66%), Positives = 183/228 (80%), Gaps = 4/228 (1%) Query: 2 LIAMTSS----QRQAADRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVN 57 ++ MTS+ Q + ++LPVTVLSGFLGAGKTTLLNHIL NR+G RVA+IVNDMSE+N Sbjct: 16 VVVMTSTRLLPQNEVPMKKLPVTVLSGFLGAGKTTLLNHILANRDGLRVALIVNDMSEIN 75 Query: 58 IDAALVRDGGADLSRTEEKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGIS 117 IDAALVRDGGA+LSRTEE+LVEM+NGCICCTLR+DLL EVR LA + RFD L+IESTGI+ Sbjct: 76 IDAALVRDGGANLSRTEEQLVEMTNGCICCTLRDDLLTEVRALAEQGRFDYLLIESTGIA 135 Query: 118 EPLPVAETFTFTDEDGASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNR 177 EPLPVA TF F DE+G SLSDVA+LDTMVTVVDA N L DY S D L RG++ G+ DNR Sbjct: 136 EPLPVAATFDFRDENGRSLSDVAQLDTMVTVVDAANLLNDYGSSDFLADRGETAGDGDNR 195 Query: 178 TVVDLLIEQIEFCDVIVLNKLDLVAADDLERLHAILHKLNPRARIVRA 225 T+VDLL+EQIEF DV+VLNK+ ++ + I+ LNP A+++ A Sbjct: 196 TIVDLLVEQIEFADVVVLNKIGTATPEERDAARKIIVGLNPDAKLIEA 243 >RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia solanacearum Length = 424 Score = 291 bits (746), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 149/208 (71%), Positives = 174/208 (83%), Gaps = 3/208 (1%) Query: 21 VLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDG---GADLSRTEEKL 77 +LSGFLGAGKTTLLNH+L NREG+RVAVIVND+S+VNIDA LV DG A LSRT+E++ Sbjct: 1 MLSGFLGAGKTTLLNHVLANREGKRVAVIVNDLSDVNIDAQLVGDGTATSAQLSRTDERM 60 Query: 78 VEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEDGASLS 137 VE+SNGCICCTLREDLL E+ +LARE RFD L+IESTG++EPLP+AETFTF D +G LS Sbjct: 61 VELSNGCICCTLREDLLDEIARLAREDRFDYLLIESTGVAEPLPIAETFTFEDAEGRLLS 120 Query: 138 DVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIVLNK 197 D+ARLDTMVTVVDA +FL DY + D L RGQ+ E+D+RTVVDLLIEQ+EFCDVIVLNK Sbjct: 121 DLARLDTMVTVVDAQHFLADYDAADFLADRGQARDEDDDRTVVDLLIEQVEFCDVIVLNK 180 Query: 198 LDLVAADDLERLHAILHKLNPRARIVRA 225 DLV + ERL ILH LNPRARI+ A Sbjct: 181 TDLVDEAERERLAGILHSLNPRARILPA 208 >BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus subtilis Length = 397 Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/212 (66%), Positives = 174/212 (82%), Gaps = 2/212 (0%) Query: 15 RRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTE 74 +++PVTVLSG+LGAGKTTLLN IL NREG ++AVIVNDMSEVNIDA LV+ G LSRT+ Sbjct: 2 KKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGG-LSRTD 60 Query: 75 EKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED-G 133 EKLVEMSNGCICCTLREDLL+EV KLA++ RFD +VIESTGISEP+PVA+TF++ DE+ G Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGISEPIPVAQTFSYIDEEMG 120 Query: 134 ASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVI 193 L+ +LDTMVTVVDA F DY S +SL R +++GE+D R + DLLI+QIEFCDV+ Sbjct: 121 IDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDVL 180 Query: 194 VLNKLDLVAADDLERLHAILHKLNPRARIVRA 225 +LNK DLV+ +LE+L +L KL PRAR +R+ Sbjct: 181 ILNKCDLVSEQELEQLENVLRKLQPRARFIRS 212 >PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas aeruginosa Length = 400 Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 145/211 (68%), Positives = 174/211 (82%), Gaps = 3/211 (1%) Query: 14 DRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALV-RDGGADLSR 72 ++RLPVTVLSGFLGAGK+TLLNH+L NRE RRVAVIVNDMSE+NID + V RD L+R Sbjct: 2 NQRLPVTVLSGFLGAGKSTLLNHVLKNRENRRVAVIVNDMSEINIDGSEVQRD--VSLNR 59 Query: 73 TEEKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED 132 EE+LVEMSNGCICCTLREDLL EV +LARE RFD L+IESTGISEP+PVAETFTF DE Sbjct: 60 AEERLVEMSNGCICCTLREDLLEEVGRLAREGRFDYLLIESTGISEPMPVAETFTFRDEL 119 Query: 133 GASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDV 192 SLSDVARLDTMVTVVD NFL+DY SL RG+++GEED R++ DLLI+Q+EF DV Sbjct: 120 DRSLSDVARLDTMVTVVDGMNFLRDYQEAASLASRGETLGEEDQRSITDLLIDQVEFADV 179 Query: 193 IVLNKLDLVAADDLERLHAILHKLNPRARIV 223 I+++K+DL++++ E L AIL +LN A I+ Sbjct: 180 ILVSKIDLISSEQREELLAILRQLNAEAEIL 210 >SA0410 [R] COG0523 Putative GTPases (G3E family) Sau Staphylococcus aureus N315 Length = 400 Score = 273 bits (698), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 131/211 (62%), Positives = 172/211 (81%), Gaps = 2/211 (0%) Query: 16 RLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEE 75 ++PVTVLSG+LG+GKTTLLNHIL NREGRR+AVIVNDMSEVNID LV DGG LSRT+E Sbjct: 3 KIPVTVLSGYLGSGKTTLLNHILQNREGRRIAVIVNDMSEVNIDKDLVADGGG-LSRTDE 61 Query: 76 KLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED-GA 134 KLVE+SNGCICCTLR+DLL EV +L ++ DQ+VIESTGISEP+PVA+TF++ D++ G Sbjct: 62 KLVELSNGCICCTLRDDLLKEVERLVKKGGIDQIVIESTGISEPVPVAQTFSYIDDELGI 121 Query: 135 SLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIV 194 L+ + RLDTMVTVVDA F+ D +S+D L R QS+ E D R++ DLLI+Q+EFCDV++ Sbjct: 122 DLTAICRLDTMVTVVDANRFVHDINSEDLLMDRDQSVDETDERSIADLLIDQVEFCDVLI 181 Query: 195 LNKLDLVAADDLERLHAILHKLNPRARIVRA 225 +NK+DL++ ++L +L +L L P A+I++ Sbjct: 182 INKIDLISEEELAKLEKVLSALQPIAKIIKT 212 >BH1790 [R] COG0523 Putative GTPases (G3E family) Bha Bacillus halodurans Length = 395 Score = 271 bits (694), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 137/209 (65%), Positives = 166/209 (79%), Gaps = 3/209 (1%) Query: 16 RLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEE 75 ++PVTVLSG+LGAGKTT+LNH+L N+EG +VAVIVNDMSEVNIDA LV+ GG +RT+E Sbjct: 5 KIPVTVLSGYLGAGKTTVLNHVLANKEGMKVAVIVNDMSEVNIDATLVKQGG--FTRTDE 62 Query: 76 KLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED-GA 134 KLVE+ NGCICCTLREDL++EV KLAR D ++IESTGISEP+PVA+TFT+ DE+ G Sbjct: 63 KLVELQNGCICCTLREDLIIEVEKLARLGNIDYILIESTGISEPIPVAQTFTYLDEELGI 122 Query: 135 SLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIV 194 L D LDTMVTVVDA F +DY S +SL R Q+ E D R VVDLLI+QIEF +VI+ Sbjct: 123 HLGDRCTLDTMVTVVDANRFWEDYESGESLLDRKQTDDEADTREVVDLLIDQIEFANVIL 182 Query: 195 LNKLDLVAADDLERLHAILHKLNPRARIV 223 LNK+DLV DD+ L A+LHKLNP A I+ Sbjct: 183 LNKVDLVEEDDVRELTAVLHKLNPEAEIL 211 >XF1830 [R] COG0523 Putative GTPases (G3E family) Xfa Xylella fastidiosa 9a5c Length = 442 Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 135/213 (63%), Positives = 162/213 (76%) Query: 13 ADRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSR 72 +D RLPVTV SGFLGAGKTTLLN +L+NR+G RVAVIVNDMSEVNIDA LVRDGGA LSR Sbjct: 8 SDLRLPVTVFSGFLGAGKTTLLNRLLNNRDGLRVAVIVNDMSEVNIDAQLVRDGGAALSR 67 Query: 73 TEEKLVEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDED 132 T+E LVE SNGCICCTLR+DL EV++LA E+R+D L+IESTGI EP+PVA TF D D Sbjct: 68 TDETLVEFSNGCICCTLRDDLSKEVKRLALEQRYDYLLIESTGIGEPMPVAATFAVRDAD 127 Query: 133 GASLSDVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDV 192 G LSDVARLDTMVTVVD F +SS ++L GQ +D R++ DLL +QIEF D Sbjct: 128 GFCLSDVARLDTMVTVVDGSQFTALFSSMNTLADLGQQADSDDTRSLADLLGQQIEFADT 187 Query: 193 IVLNKLDLVAADDLERLHAILHKLNPRARIVRA 225 IV++K DL+ L R+ A++ LN A+I+ A Sbjct: 188 IVISKCDLIDTTQLARVRAVVRGLNRDAQIIEA 220 >Cgl0672 [R] COG0523 Putative GTPases (G3E family) Cgl Corynebacterium glutamicum Length = 362 Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 116/205 (56%), Positives = 147/205 (71%), Gaps = 1/205 (0%) Query: 18 PVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEEKL 77 PVTVLSGFLG+GKTTLLN ILH+R R++AVIVND SE+NIDAAL+ G L+R E++ Sbjct: 6 PVTVLSGFLGSGKTTLLNQILHHRGSRKIAVIVNDFSEINIDAALIASEG-HLTRGEDRF 64 Query: 78 VEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEDGASLS 137 VE++NGCICCTLREDL+ V +LA RFD +VIESTGISEP+PVA TF + +DG L+ Sbjct: 65 VELTNGCICCTLREDLVDSVGELASSDRFDHIVIESTGISEPMPVAATFEWQWDDGTRLA 124 Query: 138 DVARLDTMVTVVDAFNFLKDYSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIVLNK 197 D A +DTMVT+VDA F+ SL + E+D RT+ DLL +QIEF D I + K Sbjct: 125 DKAPIDTMVTLVDATQFIDLIRKNTSLTEADMGATEDDERTIADLLTDQIEFADRIYITK 184 Query: 198 LDLVAADDLERLHAILHKLNPRARI 222 DLV LE+ A++ ++PRARI Sbjct: 185 SDLVDRTVLEQTRALIASMSPRARI 209 >alr1093 [R] COG0523 Putative GTPases (G3E family) Nos Nostoc sp. PCC 7120 Length = 374 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 34/222 (15%) Query: 7 SSQRQAADRRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDG 66 S A + +PVT+++GFLG+GKTTLLNHIL N++G + AV+VN+ E+ ID L+ Sbjct: 9 SQPMDAPKQGMPVTIITGFLGSGKTTLLNHILSNQQGLKTAVLVNEFGEIGIDNELI--- 65 Query: 67 GADLSRTEEKLVEMSNGCICCTLREDLLMEVRK-LARERRFDQLVIESTGISEPLPVAET 125 T+E +VE+SNGCICCT+ DL+ V K L RE + D LV+E+TG+++PLPVA T Sbjct: 66 ----VSTDENMVELSNGCICCTINNDLVDAVYKVLEREEKLDYLVVETTGLADPLPVALT 121 Query: 126 FTFTDEDGASLSDVARLDTMVTVVDAFNFLKD-YSSQDSLDQRGQSMGEEDNRTVVDLLI 184 F G L D+ RLD+++TVVDA N+ D ++SQ + Sbjct: 122 FL-----GTELRDLTRLDSIITVVDAANYSLDLFNSQAAY-------------------- 156 Query: 185 EQIEFCDVIVLNKLDLVAADDLERLHAILHKLNPRARIVRAR 226 QI + DVI+LNK DLV L L ++++ ARI+R + Sbjct: 157 SQIAYGDVILLNKTDLVDEASLNDLERKINEVKEGARILRTK 198