BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0007.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2694 [NU] COG3121 P pilus assembly protein, chaperone PapD Rs... 113 4e-25 mll7725 [NU] COG3121 P pilus assembly protein, chaperone PapD Ml... 110 2e-24 AGl297 [NU] COG3121 P pilus assembly protein, chaperone PapD Atu... 100 5e-21 RSp1499 [NU] COG3121 P pilus assembly protein, chaperone PapD Rs... 98 1e-20 SMa1597 [NU] COG3121 P pilus assembly protein, chaperone PapD Sm... 77 3e-14 PA4651 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae... 75 1e-13 YPO1697 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 73 5e-13 DRB0062 [NU] COG3121 P pilus assembly protein, chaperone PapD Dr... 62 1e-09 >RSc2694 [NU] COG3121 P pilus assembly protein, chaperone PapD Rso Ralstonia solanacearum Length = 253 Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 8/220 (3%) Query: 10 ALASNFEIAPVVLELSSARTAGVVKIVNN-DNHNVSLQVRAYEWNQVDSKDELQPTQNLI 68 A A+NF + PV +ELS R + + + N + +V +++RA W Q + +D P Q+L+ Sbjct: 29 AQAANFTVTPVRVELSQQRPSAALTVKNEMTDESVVVELRAVAWTQTNGEDVYAPAQDLL 88 Query: 69 ISPPVFNLAPGASQVIRVVSRQ-AAGASEIAFRLLIDEIPSSSEGAL--ISFKFRISMPV 125 +PP+F LAPGA+QVIRV R A E+++RL + E+P + + + +PV Sbjct: 89 ATPPIFTLAPGATQVIRVGLRHPPADDGEVSYRLFLREVPPPPKPGFAGVQIALEMRLPV 148 Query: 126 FIAANT--APKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPY 183 F T AP+L+ + L V N GN A++ +L +T P ++ A Y Sbjct: 149 FAKPRTPAAPQLKWRAEPLPDGALALSVTNDGNAHAQVANLVVTAPGAERPVATYPEFAY 208 Query: 184 TLAGLTRQYLIET--ETPLAAGSKVKLTANSDAGPIDTEL 221 L G TR+ +++ + P G + L A SDAG ID+ L Sbjct: 209 VLPGQTRRLVLKRGPDAPAVTGGTLHLKAYSDAGDIDSAL 248 >mll7725 [NU] COG3121 P pilus assembly protein, chaperone PapD Mlo Mesorhizobium loti Length = 272 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 7/212 (3%) Query: 16 EIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISPPVFN 75 +AP +E+ + +A + + N+ +++Q+R + W Q + L+PT +++ SPP Sbjct: 61 RVAPTNIEMIAPDSAAALTLRNDAKQPINVQIRVFRWTQEGGIERLEPTSDVVASPPAAK 120 Query: 76 LAPGASQVIRVVS-RQAAGASEIAFRLLIDEI--PSSSEGALISFKFRISMPVFIAANTA 132 L PGA ++RVV ++A A E ++R++IDE+ PS + +S R S+PVF A Sbjct: 121 LGPGADYLVRVVRVSKSAVAGEESYRVIIDELPDPSRKKAGTVSLVLRYSVPVFFRNPDA 180 Query: 133 PKLQLDYQLHA-GKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPYTLAGLTRQ 191 + + L G+ L +N+G R RL DL LT +G+K+ G Y L G T Q Sbjct: 181 AAPDVSWSLSGKGRGLLLTAKNTGESRLRLSDLTLT-QSGRKLGNRNGLVGYVLGGATMQ 239 Query: 192 YLIETETPLAAGSKVKLTANSDAGPIDTELTV 223 + I +T +G V L+A SD GP D +++ Sbjct: 240 WPIAGKT--LSGGAVLLSAQSDFGPFDANVSI 269 >AGl297 [NU] COG3121 P pilus assembly protein, chaperone PapD Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 6 AVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQ 65 +V P+ A++ +APV+L+L + A ++I N+ +++QVR + W Q + +D Sbjct: 15 SVSPSQAASLRVAPVLLDLKAPTAASSLRIWNDAKTPINVQVRIFRWTQQNGQDVYTAVN 74 Query: 66 NLIISPPVFNLAPGASQVIRVV--SRQAAGASEIAFRLLIDEIPSSS--EGALISFKFRI 121 +++ SPP+ L GA +IR+V S+ A E ++R+++DE+P + + ++ R Sbjct: 75 DVVASPPMTQLKGGAENLIRIVRLSKTPVRAEE-SYRIIVDELPPAGKPQSGTVNLVVRH 133 Query: 122 SMPVFIAANTAPKLQLDYQLH-AGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGG 180 S+PVF + + + +++ GK ++ V N+G RR R+ +L L+ NG+ I G Sbjct: 134 SIPVFFSPASTGDAEPVWKVTPQGKGYKVSVSNAGERRIRIANLILSGGNGQPIGRQQGL 193 Query: 181 NPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVA 224 Y L +L+ T AG +K++A+S+ GP++ V+ Sbjct: 194 VGYVLGKSAATFLVPA-TGGKAGGTLKISADSEGGPVNATARVS 236 >RSp1499 [NU] COG3121 P pilus assembly protein, chaperone PapD Rso Ralstonia solanacearum Length = 241 Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 6/182 (3%) Query: 16 EIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISPPVFN 75 +I+P+ L+L ++AG + + N ++ QVR + W Q D L+P L+ SPP+ Sbjct: 37 QISPIRLDLLPGQSAGSLTLRNRGTQPLNAQVRVFRWTQDAEGDRLEPAPALVASPPIVQ 96 Query: 76 LAPGASQVIRVVSRQ-AAGASEIAFRLLIDEIPSSSEGAL--ISFKFRISMPVFIAANTA 132 ++ Q++RVV Q AAG E +RLLIDE+P A ++ + R S+PVF+ A+T Sbjct: 97 ISGEGEQLVRVVLTQPAAGNDEQTYRLLIDELPERRPQAQTGVTMQLRYSVPVFVNASTG 156 Query: 133 --PKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPYTLAGLTR 190 P+L + G+ L+V+N R A+L D+++ +G + AG Y L G TR Sbjct: 157 APPRLSAALRRDGGR-TLLVVRNPEARHAQLADVSIEWSDGTRSPLTAGLLGYALGGATR 215 Query: 191 QY 192 + Sbjct: 216 AW 217 >SMa1597 [NU] COG3121 P pilus assembly protein, chaperone PapD Sme Sinorhizobium meliloti Length = 260 Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 9/218 (4%) Query: 12 ASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISP 71 A++ I+P +E + A V + N + +S++VR + W+Q ++L+PT +++ SP Sbjct: 45 ATSLMISPSSIERVAPDRAAVFHLRNQMDRPISIKVRVFRWSQKGGVEKLEPTGDVVASP 104 Query: 72 PVFNLAPGASQVIRVVS-RQAAGASEIAFRLLIDEI-PSSSEGALISFKFRISMPVFIAA 129 L+P ++ +RVV + SE +R++IDE P+ + S R +PV Sbjct: 105 ISAQLSPNGNRAVRVVRVSKEPLRSEEGYRVVIDEADPTRNTPEAESLSARHVLPVLFRP 164 Query: 130 NT--APKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGN-PYTLA 186 P+++L G L+V+N G R RL D +TL G + A G Y L Sbjct: 165 PDVLGPEIELSLTRSDGW-LMLVVENKGASRLRLSD--VTLAQGSAVIARREGFVGYVLP 221 Query: 187 GLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVA 224 GLTR + + E + G V ++ANS G I +L V+ Sbjct: 222 GLTRHWRVGREDSYSGG-IVTVSANSSGGAIGEQLVVS 258 >PA4651 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae Pseudomonas aeruginosa Length = 262 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 29/236 (12%) Query: 8 PPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNL 67 P AS I P+ + + + A + + N V+LQVR W+Q D +D + Q + Sbjct: 25 PAQAASAVLIWPINPAIEADQPATALWLENRGKQPVTLQVRVLGWSQADFQDVYRNQQAV 84 Query: 68 IISPPVFNLAPGASQVIRVVSRQAAGAS--EIAFRLLIDEIPSS-------SEGALISFK 118 I SPP + PG Q++R++ RQ S E A+R+LIDE+P S G + F+ Sbjct: 85 IPSPPFVKVEPGRRQLVRLI-RQGGQPSTPEDAYRVLIDEVPDGDAGQTQRSPGLALQFQ 143 Query: 119 FRISMPVFIAAN-----------------TAPKLQLDYQLHAGKPARLMVQNSGNRRARL 161 R S+P+F++A+ T PKL GK L V+N G+ ARL Sbjct: 144 MRYSVPLFVSADGVWTQPRSDVERDPADATRPKLAWRLVEEQGK-RYLQVRNEGSVHARL 202 Query: 162 LDLALTLPNGKKINAPAGGNPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPI 217 + NG+ + G Y L G ++ + +G +KL + PI Sbjct: 203 SHVRWEG-NGRSLALLDGLLGYVLPGRQMRWPLPPGLLPDSGMTLKLQLADNDAPI 257 >YPO1697 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 250 Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%) Query: 17 IAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISPPVFNL 76 I P+ ++ A + + N D+ +Q+R W QV+ D+ +I SPPV N+ Sbjct: 30 IWPIDPVINDDENATALWLENKDSQPTYMQIRVLSWRQVNGLDDYNAQTAIIASPPVANI 89 Query: 77 APGASQVIRVVSR-QAAGASEIAFRLLIDEIPS---------SSEGALISFKFRISMPVF 126 PG Q+IR+V Q E+A+R+LIDEIP SS ++F+ R S+P+F Sbjct: 90 QPGKRQLIRLVKNAQVPAGKELAYRILIDEIPRQEPNDKNNPSSTQLGLTFQMRYSVPLF 149 Query: 127 IAAN--------------TAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGK 172 + N P L GK L ++N AR+ + L NG+ Sbjct: 150 VYGNGMQIAPEATQPTDIAQPTLSYILNRQQGK-QWLTIRNQSEIHARISQVTL---NGQ 205 Query: 173 KIN 175 +N Sbjct: 206 TVN 208 >DRB0062 [NU] COG3121 P pilus assembly protein, chaperone PapD Dra Deinococcus radiodurans Length = 243 Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 14/162 (8%) Query: 10 ALASNFEIAPVVLELSSARTAGVVKIVNN-DNHNVSLQVRAYEWNQVDSKDELQPTQNLI 68 ALA F AP V++++S +T V N + V W+ + L+ T+++I Sbjct: 22 ALAQTFGFAPTVIQINSEQTLNSQTTVYNLGSAPARFTVTPKVWSLQGGQTVLEDTRDII 81 Query: 69 ISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLI--DEIPSSSE---------GALISF 117 ++P F + PG Q+IR+ R+ GA E+ +RL + E+P+S + G ++ Sbjct: 82 VNPTEFTIPPGGQQIIRMGLRKKPGADELTYRLQVRQQELPNSDDASVPNVGGTGTSLNL 141 Query: 118 KFRISMPVFIA-ANTAPKLQLDYQLHAGKPARLMVQNSGNRR 158 S+PV+IA ++ A K+ G L + N+GNR Sbjct: 142 VLSFSLPVYIAPSSAAAKISYAVTRDTGD-LLLKMTNAGNRH 182