BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0006.p (754 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1498 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ra... 386 e-106 PA4652 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pse... 345 2e-94 AGl299 [NU] COG3188 P pilus assembly protein, porin PapC Atu Agr... 323 7e-88 RSc2693 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ra... 319 2e-86 YPO1696 [NU] COG3188 P pilus assembly protein, porin PapC Ype Ye... 310 1e-83 mll7724 [NU] COG3188 P pilus assembly protein, porin PapC Mlo Me... 300 7e-81 ECs1278 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Es... 99 5e-20 Z1536 [NU] COG3188 P pilus assembly protein, porin PapC EcZ Esch... 97 1e-19 ZyraJ [NU] COG3188 P pilus assembly protein, porin PapC EcZ Esch... 82 3e-15 ECs4022 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Es... 82 3e-15 >RSp1498 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ralstonia solanacearum Length = 786 Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 374/710 (52%), Gaps = 19/710 (2%) Query: 16 GDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDGGDDE---LIAIRALA 72 G + L LE ING T+ +A+ R L A+A ELR+L +R+D + LIA+ +A Sbjct: 44 GTDDLYLEAIINGTPTHTIARLRLRDGRLSAAAGELRALGIRIDDLQPDANGLIALDGVA 103 Query: 73 SRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNYD--LLASSGQGQ 130 E A+ + + D+ A RVP + + G VLNYD L ++ G Sbjct: 104 GLRYTYEVRAQQVRFVLDDARRVPDVLTVHARPRVPPT-SGTGLVLNYDAYLQPTTPGGD 162 Query: 131 HALGGLF-DARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTRYRLGDVINS 189 A G+F + R+F V S+S + RLE++ +++ P LT RLGD + + Sbjct: 163 GASLGVFSEQRFFHPGGVFSNSGVALAARGADRYTRLETSWSHADPERLTTLRLGDTVTA 222 Query: 190 SLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPPG 249 +L WSR+VRLGG Q+ +F+LRPDLV +P P L VP+ VDL+VN VRQ S G Sbjct: 223 ALGWSRAVRLGGVQWQRNFDLRPDLVTYPLPLLSASAAVPTAVDLYVNNVRQFSGQARGG 282 Query: 250 PFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRHYG 309 PF + P +GAGQ + V D LGR + +V Y LL GLS Y+ E G++R YG Sbjct: 283 PFVLNAAPAVTGAGQAVIVVKDALGRDVVTSVPLYIDTGLLAAGLSDYAVEAGFLRNQYG 342 Query: 310 LRSNDYGQF-ALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRAVLASALSAS 368 + + DY + ALS + R+G+S LTLE HAEA GL G G LG V++ A S + Sbjct: 343 VHTFDYARSPALSASLRYGLSGSLTLESHAEAARGLANLGAGMRTRLGQAGVVSGAASVA 402 Query: 369 SAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVATLGMNLGS 428 SG Q SL + A +++ L T+ YQD+ + GAP RS T+ +G Sbjct: 403 RGGDASGAQGSLGYQYRAPGIAIDLQGTRTFGTYQDLASTAGAPFYRSLLRGTVSRPVGR 462 Query: 429 AGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRDFRNS-GYG 487 GS++++Y L G S ++L+Y LG S+ + Y+D +S G Sbjct: 463 TGSVALSY---------IGLSVPGSDRSRIVSLSYAALLGRDLSLSASAYQDLADSRARG 513 Query: 488 ASVGIIIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTEGSYQQR-LAQ 546 + + LG AS+ +++G+ AT+ A R+ G GWQLQ Q+R LAQ Sbjct: 514 VLLTFSMALGRDANAAASVGSDHGRAEATVSAVRTPDYAGGFGWQLQSGRSGAQRRSLAQ 573 Query: 547 LNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVG 606 +NY+ R G A V + +S L A G+L MDG V I+D+FA+V G+ +V Sbjct: 574 VNYRGRYGDAFAAVQEINGQASTALDAAGSLVLMDGAVLPGRRINDAFALVTTEGMADVP 633 Query: 607 IYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIV 666 + ENR GRT+ G LL+ DL AY+ N++++D L LP+ +L S + P DRSGV+V Sbjct: 634 VTFENRLMGRTNAQGHLLVPDLVAYENNRVAIDPLALPINARLAASAATLAPTDRSGVLV 693 Query: 667 HFNARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQEL 716 HF+ L L DA LP G+ + TG + P+GYDG++++ L Sbjct: 694 HFHVETFRGAQLRLVDALEQPLPAGSHATLARTGARYPIGYDGLAFIDAL 743 >PA4652 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pseudomonas aeruginosa Length = 790 Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 240/731 (32%), Positives = 370/731 (50%), Gaps = 20/731 (2%) Query: 16 GDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDGGDDELIAIRALAS-R 74 G+ L LE+ INGRD+ V AA LR +R+ G +A+ AL R Sbjct: 45 GNVLYYLELVINGRDSGQVVPVNAADGHYLLDAAALREAGVRLPGNPAGQVAVDALPEVR 104 Query: 75 IQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNYDLLAS--SGQGQHA 132 D A+ +++L++ P ++ + AR P + ++ GA+ NYDL S + Sbjct: 105 ADYDSASQQLHLQVPPDWLPEQRFDDPGLVARAP-ARSSLGALFNYDLYYSDPADGATPW 163 Query: 133 LGGLFDARWFSGSAVVSSSAL--GYTGNSGGVSARL---ESTLTYSQPASLTRYRLGDVI 187 L L + R F G V+S++ + Y G++ + +R ++ Y+ ++ Y+LGD + Sbjct: 164 LSALLEQRLFDGFGVISNTGVYTRYFGDADNLDSRYLRYDTYWLYNDERNMHSYQLGDYV 223 Query: 188 NSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVP 247 N +L W+ VR+GGF++A +F +RPDLV +P G+ VPSTVDLF+NG + S + Sbjct: 224 NGALNWTTPVRMGGFRFARNFGVRPDLVTYPLLRFDGQAAVPSTVDLFINGYKASSADLQ 283 Query: 248 PGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRH 307 PGPF I P +GAG+ V TD GRQ + ++ FY ++ LL GLS + G +R Sbjct: 284 PGPFAISNVPYINGAGEATVVTTDAQGRQVVTSLPFYVSNTLLARGLSDFDLSVGRLRDD 343 Query: 308 YGLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRAVLASALSA 367 YGLR+ Y A SG R+GVSD LTL HAEA L+L G G + + L+ A S Sbjct: 344 YGLRNFSYADNAASGIYRYGVSDRLTLSTHAEAASDLRLLGIGGDIAVATFGTLSLAASG 403 Query: 368 SSAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGA-PVSRSATVATLGMNL 426 S SGQQ+ L + L LSL + + Y D+G L G +SR AT + Sbjct: 404 SDGQGDSGQQYLLGYSYYSRRLGLSLQHIERSAGYGDLGTLDGEYQLSRRTDQATASLTF 463 Query: 427 GSAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRDFRNSGY 486 G++ Y ++ D T LA+ L+Y + +GS +S YL +D GY Sbjct: 464 DEQGTIGTGYFDIRA----RDGSRTRLAN-----LSYSRPIGSRSSFYLALNKDLDGDGY 514 Query: 487 GASVGIIIPLGGRDVVGASMNNNNGQR-TATLQASRSTVAIGDLGWQLQDTEGSYQQRLA 545 A + ++IP ++ + ++ +R + + SRST + G LGW L G+ + + A Sbjct: 515 SALMQLVIPFDINGLLNIGVTRDSDRRYSERVIWSRSTPSQGGLGWNLGYGGGASRYQQA 574 Query: 546 QLNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNV 605 L ++ + G+ ++ G+L +MD VFAS+ I+D+F +V+ G V Sbjct: 575 DLTWRMQNVQLQGGLYGETGNYTRWADLSGSLVWMDNAVFASNRINDAFVLVSTKGYPQV 634 Query: 606 GIYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVI 665 I EN+ G TDDNG LL+ + AY K ++ LDLP + + +Q V R SG++ Sbjct: 635 PIRYENQLMGSTDDNGHLLVPWVAAYYPAKFQIEPLDLPANVSAPEVEQRVAVRQGSGLL 694 Query: 666 VHFNARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQELAPLNTLDVL 725 + F R +++L D G LP+G+ +G +A VG+DG Y + L N L V+ Sbjct: 695 LDFPIRAVVAASISLVDERGEPLPLGSQAEETGSGQRASVGWDGQVYFEGLQSDNQLRVV 754 Query: 726 LPSGDQCHATL 736 P G C A Sbjct: 755 RPDGRACQARF 765 >AGl299 [NU] COG3188 P pilus assembly protein, porin PapC Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 812 Score = 323 bits (829), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 241/752 (32%), Positives = 369/752 (49%), Gaps = 36/752 (4%) Query: 20 LLLEVAINGRDTNLVAQFTRRQRE---LYASAAELRSLNLR-------VDGGDDELIAIR 69 L LEV IN T+L+A F RQ + L +L+++ + DG D + + Sbjct: 50 LQLEVYINDVSTDLIATF--RQNDAGSLLIEPDQLKNIGISPVESAVSADGWID-VSRLP 106 Query: 70 ALASRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQ----GAVLNYDLLAS 125 + +R + L +A R + D S + G ++NY + S Sbjct: 107 EVTARYDESIQSVHFTLPMAARANKVIDASGKSTHEENKETEEKATSNFGGLVNYTIYGS 166 Query: 126 SGQGQ-------HALGGLFDARWFSGSAVVSSSALGYTGN-SGGVSARLESTLTYSQPAS 177 SG G + + L ++R F V+SSS + T S + RL++T +YS + Sbjct: 167 SGGGTWSDIADFNGVSALLESRVFGPLGVLSSSQVLSTSRLSEFDTQRLDTTWSYSNEET 226 Query: 178 LTRYRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVN 237 LT YR GD+I L+W+R R GG Q +F+LRPD+V P P G VPSTVD++VN Sbjct: 227 LTTYRAGDLITGGLSWTRPTRFGGLQIRRNFDLRPDIVTMPMPEFSGSAAVPSTVDVYVN 286 Query: 238 GVRQLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSY 297 +R+LSQ VP GPF I P+ SGAG + V D LGR+ + FY + LL GL + Sbjct: 287 NIRRLSQDVPEGPFSITNLPVISGAGNARLVVRDALGREIVSETPFYTSPDLLAQGLVDF 346 Query: 298 SAEGGWVRRHYGLRSNDYGQFAL-SGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLG 356 SAE G+ RR+YG S DY L S T R+GVSD T+EGHAE G G V LG Sbjct: 347 SAELGFARRNYGTSSFDYDDRLLGSATVRYGVSDGFTVEGHAEGGEDFYNVGLGGVFTLG 406 Query: 357 NRAVLASALSASSAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQG-----A 411 + A + ++S SG Q S ++E + L+ +A DY D+ ++ Sbjct: 407 AHGLAALSGASSRFGDESGYQLSASVEAELLGVRLNARSQRAFGDYNDMASVSANTSKIQ 466 Query: 412 PVSRSATVATLGMNLGSAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTA 471 P+S +V + S + + + +T L T S L L+ + G Sbjct: 467 PISGLLSVRPPRALDQISVSTQLGFDETSLNFSYTQLETFDERRSRLLGLSATRPFGENG 526 Query: 472 SMYLTGYRDFRNSG-YGASVGIIIPLGGRDVVGASMNNNNGQRTATLQASRSTV-AIGDL 529 +++T Y+D +S YG G+ GG A M++N + T + +S A G Sbjct: 527 DIFVTAYKDLEDSNSYGIFAGLSWSFGGGVSGSAGMSSNADGYSLTAEVVKSEEQAEGSY 586 Query: 530 GWQLQDTEGSYQQRLAQLNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDW 589 GW+L+ G A +Y+ SAG+ Q + G++A G VF + Sbjct: 587 GWRLRGALGGNDIASASGSYRGTAARVSAGIDQFNRTTQAYAQIEGSIAVAGGDVFIGNR 646 Query: 590 IDDSFAVVNASGVKNVGIYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQL 649 IDD+FAVV+A G V I ENR G+T+ G++LL +LR+YDVN I++D +LP+ ++ Sbjct: 647 IDDAFAVVDA-GAPGVDILLENRPIGQTNRRGKILLPNLRSYDVNNITLDPSNLPVDARI 705 Query: 650 DQSDQYVKPRDRSGVIVHFNARRASDVTL-TLKDAAGNYLPIGASIRVRETGLQAPVGYD 708 D + Q V+P +R+G +V+F V L TLK +G+++ G++ + + + VGYD Sbjct: 706 DHTKQTVRPTERAGAVVNFKVETEGQVALVTLKAESGDFIETGSTGTI-DGKREFIVGYD 764 Query: 709 GVSYLQELAPLNTLDVLLPSGDQCHATLVPPV 740 G +YL + + L + P+ +C A ++ P Sbjct: 765 GQAYLDNIGATHRLHITQPTRGKCEAEIIVPT 796 >RSc2693 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ralstonia solanacearum Length = 754 Score = 319 bits (817), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 247/717 (34%), Positives = 363/717 (50%), Gaps = 32/717 (4%) Query: 20 LLLEVAINGR---DTNLVAQFTRRQRELYASAAELRSLNLR------VDGGDDELIAIRA 70 LLL+ +N + DT L+ + ELYASA +L+ LR + ++ ++A Sbjct: 21 LLLQFDLNQQGLDDTVLL--LKTKGGELYASAEDLKRWRLRQPEATPLAHNNEVFYPLKA 78 Query: 71 LAS-RIQLDEAAAKVNLEI-APRFMNITDIEANSAAARVPLSPAAQGAVLNYDLLASSGQ 128 + QLDE V + A F+ EAN A + L P G LNYDLLA Sbjct: 79 ITGLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVA-LSLKPGF-GGFLNYDLLAEHAT 136 Query: 129 GQHALGGLFDARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTRYRLGDVIN 188 GQ GLF+A F+G V +S + +G++ RLE+T T P L+ RLGD I+ Sbjct: 137 GQTRSSGLFEAGVFNGLGVGVASFVANSGDTEHRLIRLETTWTKDLPDHLSSVRLGDSIS 196 Query: 189 SSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPP 248 + AW RSVR GG QY+++F ++P V P S+GG+ +PSTVD++VN V + V P Sbjct: 197 RAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTVDVYVNNVLSSRKDVAP 256 Query: 249 GPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRHY 308 GPF I P+ +G G + V V D LGR+ + +V FYA+ LL GL +S E G RR++ Sbjct: 257 GPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAKGLHDFSYEAGAERRNF 316 Query: 309 GLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRAVLASALSAS 368 G SNDYG+ + T R G +DWLT E HAE+ + G G V+ + V ++A +AS Sbjct: 317 GTDSNDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTVMLAPSVGVFSAAAAAS 376 Query: 369 SAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVATLGMNLGS 428 GSG S+ ER A P+S+ + A+ + +G P R + +GM L Sbjct: 377 RGRQGSGGLVSVGFERQASPVSVGVHAQLASPRFTQLGLELDMPAPRLLSSVNVGMALPG 436 Query: 429 AGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRDFRNSGYGA 488 GSL +AY + D T LA + +Y LG + L + G G Sbjct: 437 GGSLGLAYVYLDN----RDGHPTQLASA-----SYGTQLGRFGFISLALSKTLHQPG-GL 486 Query: 489 SVGI--IIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTE-GSYQQRLA 545 VG+ +PLG R +M G+ Q + G+ ++ ++ G++ A Sbjct: 487 MVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGAWD---A 543 Query: 546 QLNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNV 605 LN ++RVG++ + + R+GA G +A +D G+ S I DSFAVV NV Sbjct: 544 ALNAQNRVGTYLLEAAGDRGQTGVRMGASGGIAILD-GLHLSRRISDSFAVVKVPDFPNV 602 Query: 606 GIYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVI 665 IY +N+ +T+ +G+ L+ LRAY+ N IS++ LDLP ++ P RSG++ Sbjct: 603 RIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDLPFDAKVGTLSLDAVPYYRSGMV 662 Query: 666 VHFNARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQELAPLNTL 722 + F A D +TLK G+ LP GA++++ PVG DGV YL LA N L Sbjct: 663 LDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRL 719 >YPO1696 [NU] COG3188 P pilus assembly protein, porin PapC Ype Yersinia pestis Length = 815 Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 226/784 (28%), Positives = 375/784 (47%), Gaps = 58/784 (7%) Query: 17 DELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDGGDDELIAIRALAS-RI 75 D L LE+ +N R+ + R Y S ++LR++ L + IAI +A + Sbjct: 44 DTTLYLELVVNDRNFGSTVPISYRNNRYYLSQSQLRTIGLPISEPLAPEIAIDNMAGVNV 103 Query: 76 QLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNYDLLASSGQGQHAL-- 133 + D ++ + + ++ IE + L+ ++ GA+ NYD+ A+ G +L Sbjct: 104 KYDGENQRLLINVPSEWLPKQQIEV-TEQDDFNLAQSSLGALFNYDIYATQGYPYSSLTH 162 Query: 134 -GGLFDARWFSGSAVVSSSAL---GYTGNSGGVSA----RLESTLTYSQPASLTRYRLGD 185 + R F ++S++ + + N+ A R ++ + L RY GD Sbjct: 163 FSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSTGD 222 Query: 186 VINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQP 245 +I +L WS ++RLGG Q A F +RPDL+ +P P G+ VPSTVDL+++ R S Sbjct: 223 LITGALPWSSAIRLGGIQIARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSAN 282 Query: 246 VPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVR 305 + PGPF I P +GAGQ + TD LGRQ +V FY LLKPG+ +S GG +R Sbjct: 283 INPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPFYVASTLLKPGVWDFSLSGGALR 342 Query: 306 RHYGLRSNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRAVLASAL 365 R+Y +RS DYG+ SG R+G + WLTLEG + + + GGG +G VL SA Sbjct: 343 RNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNSAY 402 Query: 366 SASSAASGS----------------------------GQQFSLAIERNADPLSLSLSRTQ 397 S S+ ++G+ G Q SL + +L+ Sbjct: 403 SISNTSNGAFNNVAEPLNTNNATPNRLPSPAASRRGRGNQRSLGYSYSNAFFNLNAQHII 462 Query: 398 ATRDYQDIGALQGAP-VSRSATVATLGMNLGSAGSLSMAYARSKSPLLFTDLGTTGLADS 456 ++ +Y D+ + +SR T T ++LGS G++ Y + L + Sbjct: 463 SSDEYSDLANYKTPSLLSRRMTQLTGSLSLGSYGTVGSGYFDVRDAL---------GEQT 513 Query: 457 ETLTLTYFKSLGSTASMYLTGYRDFRNSGYGASVGIIIPLG--GRDVVGASMNNNNGQRT 514 + ++Y SL ++ Y R+ GY + IPLG G + A+ N+N Q Sbjct: 514 RLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSSISATRTNDN-QWI 572 Query: 515 ATLQASRSTVAIGDLGWQL---QDTEGSYQQRLAQLNYKSRVGSFSAGVSQGGAISSQRL 571 L SRS + G LGW L T + Q + A + +++ + G+ + Sbjct: 573 QQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWG 632 Query: 572 GARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYTENRYAGRTDDNGQLLLTDLRAY 631 G G+L M+ V+AS+ I+D+FA+V+ +G N+ + EN+ G T+ G LL+ + +Y Sbjct: 633 GLTGSLVVMNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASY 692 Query: 632 DVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNARRASDVTLTLKDAAGNYLPIG 691 K +D ++LP + L ++ + +RSG +++F +R S V + + DA+G LP G Sbjct: 693 YQAKFQIDPMNLPADVMLPNVERRLAIGERSGYLINFPIKRISAVNIRITDASGQDLPKG 752 Query: 692 ASIRVRETGLQAPVGYDGVSYLQELAPLNTLDVL-LPSGDQCHATLVPPVRSEGGMANEV 750 ++I + VG+DG+ Y++++A LN L ++ +G QC++ +EG Sbjct: 753 SAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKLKT-TEGIQDAGT 811 Query: 751 VVCR 754 VCR Sbjct: 812 TVCR 815 >mll7724 [NU] COG3188 P pilus assembly protein, porin PapC Mlo Mesorhizobium loti Length = 807 Score = 300 bits (769), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 244/749 (32%), Positives = 373/749 (49%), Gaps = 40/749 (5%) Query: 20 LLLEVAINGRDTNLVAQFTRRQRE---LYASAAELRSLNLR-VDG--GDDELIAIRALAS 73 L LEV +N T L+ F RQ L ++ EL+ + L+ V+G G D L+ + L Sbjct: 49 LYLEVFVNDVSTGLIGAF--RQLSDGGLASTPDELQQVGLQPVEGAMGADHLVRVDRLPD 106 Query: 74 -RIQLDEAAAK--VNLEIAPRFMNITDIEANSAAARVPLSP-AAQGAVLNYDLLAS---- 125 ++DEA + V A R ++ DI R L P + G VLNY L AS Sbjct: 107 VSYRIDEATQRLYVTATNAARSAHVIDIAPQGKQDR--LKPQSGFGGVLNYSLFASINDL 164 Query: 126 ---SGQGQHALGGLFDARWFSGSAVVSSSALGY--TGNSGGVSARLESTLTYSQPASLTR 180 + Q + G FDAR FS +S + G G + RL +T +YS P L Sbjct: 165 KDRTSQLFSGVSGGFDARLFSPYGTLSQGFIVSLSDGELDGFT-RLNTTWSYSDPERLLT 223 Query: 181 YRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVR 240 Y+ GD ++ LAW+RSV LGGFQ +F+LR DLV P P+ G VPST++++ VR Sbjct: 224 YKAGDFVSGGLAWTRSVYLGGFQVQRNFSLRSDLVTLPLPNFSGTAAVPSTLEVYTQNVR 283 Query: 241 QLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAE 300 + VP GPF++ PI +GAGQ + + D LGR+T T+ FY + LLK GL +SAE Sbjct: 284 TYTSDVPAGPFQVTNLPIFTGAGQAQIVLRDSLGRETTVTLPFYNSSMLLKRGLLDFSAE 343 Query: 301 GGWVRRHYGLRSNDY-GQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVLNLGNRA 359 G RR++G+ S DY G S +AR+G+++ LTLEGH E L GG G L Sbjct: 344 VGSPRRNFGVESYDYDGGIYGSASARYGLTNRLTLEGHVEGGEDLVNGGAGIAFPLSYFG 403 Query: 360 VLASALSASSAASGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGA----LQGAPVSR 415 + A + S +G + ++E + D SL +A DY+DI + + P Sbjct: 404 AASIAAAGSRHNGQTGALVNASLELSYDGWSLYGRMQRAFADYEDIASVTAEINAVPGPN 463 Query: 416 SATVATLGMNLG---SAGSLSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTAS 472 + T G+ S+ M S L + L + S+ + ++Y +++ +S Sbjct: 464 EFPIFTAGVPRALDQVTLSVPMPLDFSNLNLSYAHLTSAEGESSQIVGVSYSQTVFKDSS 523 Query: 473 MYLTGYRDF--RNSGYGASVGIIIPLGGRDVVGAS--MNNNNGQRTATLQASRSTVAIGD 528 Y T + D +NS +G GI +PLGG DV ++ + +G A + G Sbjct: 524 FYATAFTDLDDKNS-FGVFAGISVPLGG-DVTASTGVADGPDGVSVVADIAKSERLENGS 581 Query: 529 LGWQLQDTEGSYQQRLAQLNYKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASD 588 +GW+ + +EG R A ++Y+S G+ Q GA+A GG+FA++ Sbjct: 582 IGWRARTSEGGTPNRSAAVSYRSPRARVETGIQQFDKSVRGTAEVDGAIAVAGGGIFATN 641 Query: 589 WIDDSFAVVNASGVKNVGIYTENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQ 648 IDD+FAVV+ + +NR G ++ G++L+ DL +Y+ N IS+D +LP+ Sbjct: 642 RIDDAFAVVDVGVAGVEVQH-QNRPVGVSNRQGRILVPDLNSYEDNTISIDPRNLPVDAD 700 Query: 649 LDQSDQYVKPRDRSGVIVHFNARRASDVTL-TLKDAAGNYLPIGASIRVRETGLQAPVGY 707 + ++ + V P RSGV++ F +A+D L +L D G + +GA RV + +GY Sbjct: 701 VPETRKIVVPAGRSGVVLDFGVSKAADAALVSLVDGKGTPIAVGAKGRVEGADEEFVIGY 760 Query: 708 DGVSYLQELAPLNTLDVLLPSGDQCHATL 736 DG +Y++ L N + + LP G C A Sbjct: 761 DGEAYIRTLHRQNAVAIELPDGTSCRAEF 789 >ECs1278 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Escherichia coli O157:H7 Length = 840 Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 161/660 (24%), Positives = 267/660 (40%), Gaps = 60/660 (9%) Query: 117 VLNYDLLASSGQGQHALGGLFDARWFSGSAVVSS------SALGYTGNSGGVSARLESTL 170 + NY +A SGQ H+ L+ + F+G + + S + + + G + S L Sbjct: 175 IANYYNVAYSGQNAHSQRSLWAS--FNGGINLGAWQYRQLSNMTWDNDKGNQWNNIRSYL 232 Query: 171 TYSQPASLTRYRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPS 230 PA ++ +G +I S +S + G A+D + PD +R P++ G + Sbjct: 233 QRPLPAINSQLMMGQLITSGRFFS-GLSYHGVSLATDERMLPDSMRGYAPTIRGVAATNA 291 Query: 231 TVDLFVNGVRQLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLL 290 V + NG V PGPFEI S +G + V VT+ G + +V F A + Sbjct: 292 RVSVMQNGHEIYQTTVAPGPFEINDLYPTSYSGDLDVTVTEANGAVSRFSVPFSAVPESM 351 Query: 291 KPGLSSYSAEGGWVRRHYGLRSNDYGQFALSG--TARHGVSDWLTLEGH---AEAMHGLK 345 +PG S Y+ E G ++ D G ++ G T +HG+++ LT A+ L Sbjct: 352 RPGTSRYNVEVG--------KTQDSGDDSMFGDLTWQHGMTNTLTFNSGSRIADGYQALM 403 Query: 346 LGG--GGAVLNLGNRAVLASALSASSAASGSGQQFSLAIERNADPLSLSLS---RTQATR 400 LGG G ++ G + A S A SG L + P S ++S +T Sbjct: 404 LGGVYGSSLGAFGANLTWSHARVPESEAQ-SGWMSQLTWSKTFQPTSTTVSLAGYRYSTS 462 Query: 401 DYQDIGALQGA--PVSRSATVATLGMNLGSAGSLSMAYARSKSPLLFTDLGTT----GLA 454 Y+D+ + G S + + S L+++ + + LF T G + Sbjct: 463 GYRDLADVLGERHAASNKQSWDSSQWRQQSRFDLTLSQSLANYGNLFVSGSTQNYRGGKS 522 Query: 455 DSETLTLTYFKSLGSTASMYLT-------GYRDFRNSGYG-ASVGIIIPLGGRDVVGASM 506 L L Y S SM L+ GY+D + S+ PLGG S+ Sbjct: 523 RDTQLQLGYSNSFSHGISMNLSVGRQRMGGYKDNSDDMQTVTSLSFSFPLGGNGPRVPSL 582 Query: 507 NNNNGQRT-ATLQASRSTVAIGDLGWQLQDTEGS--------YQQRLAQLNYKSRVGSFS 557 +N+ T + Q S + D + Q T S Y+Q N + R + Sbjct: 583 SNSWTHSTDGSSQLQSSLTGMLD---EAQTTNYSLNVMRDQQYKQTTLSGNMQKRFSQTT 639 Query: 558 AGV--SQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYTENRYAG 615 G+ S+G +GA+A GG+ ++ ++FA+V A G + +Y ++ Sbjct: 640 VGLNASKGQDYWQASGNVQGAMAVHGGGITFGPYLGETFALVEAKGAEGAKVYNSSQL-- 697 Query: 616 RTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNARRASD 675 +D+G L+ + Y N+IS+D + +L S++ V P + V V F R Sbjct: 698 EINDSGYALVPAVTPYRYNRISLDPQGMDGDAELVDSERQVAPVAGAAVKVIFRTRPGKA 757 Query: 676 VTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQELAPLNTLDVLLPSG--DQCH 733 + + + A G+ LP+GA + + G G YL+ L V G D C Sbjct: 758 LLIKSRMADGSELPMGADVLDENNTVVGIAGQGGQIYLRTEQTKGHLSVRWGEGANDSCQ 817 >Z1536 [NU] COG3188 P pilus assembly protein, porin PapC EcZ Escherichia coli O157:H7 EDL933 Length = 840 Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 156/639 (24%), Positives = 262/639 (41%), Gaps = 58/639 (9%) Query: 117 VLNYDLLASSGQGQHALGGLFDARWFSGSAVVSS------SALGYTGNSGGVSARLESTL 170 + NY +A SGQ H+ L+ + F+G + + S + + + G + S L Sbjct: 175 IANYYNVAYSGQNAHSQRSLWAS--FNGGINLGAWQYRQLSNMTWDNDKGNQWNNIRSYL 232 Query: 171 TYSQPASLTRYRLGDVINSSLAWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPS 230 PA ++ +G +I S +S + G A+D + PD +R P++ G + Sbjct: 233 QRPLPAINSQLMMGQLITSGRFFS-GLSYHGVSLATDERMLPDSMRGYAPTIRGVAATNA 291 Query: 231 TVDLFVNGVRQLSQPVPPGPFEIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLL 290 V + NG V PGPFEI S +G + V VT+ G + +V F A + Sbjct: 292 RVSVMQNGHEIYQTTVAPGPFEINDLYPTSYSGDLDVTVTEANGAVSRFSVPFSAVPESM 351 Query: 291 KPGLSSYSAEGGWVRRHYGLRSNDYGQFALSG--TARHGVSDWLTLEGH---AEAMHGLK 345 +PG S Y+ E G ++ D G ++ G T +HG+++ LT A+ L Sbjct: 352 RPGTSRYNVEVG--------KTQDSGDDSMFGDLTWQHGMTNTLTFNSGSRIADGYQALM 403 Query: 346 LGG--GGAVLNLGNRAVLASALSASSAASGSGQQFSLAIERNADPLSLSLS---RTQATR 400 LGG G ++ G + A S A SG L + P S ++S +T Sbjct: 404 LGGVYGSSLGAFGANLTWSHARVPESEAQ-SGWMSQLTWSKTFQPTSTTVSLAGYRYSTS 462 Query: 401 DYQDIGALQGA--PVSRSATVATLGMNLGSAGSLSMAYARSKSPLLFTDLGTT----GLA 454 Y+D+ + G S + + S L+++ + + LF T G + Sbjct: 463 GYRDLADVLGERHAASNKQSWDSSQWRQQSRFDLTLSQSLANYGNLFVSGSTQNYRGGKS 522 Query: 455 DSETLTLTYFKSLGSTASMYLT-------GYRDFRNSGYG-ASVGIIIPLGGRDVVGASM 506 L L Y S SM L+ GY+D + S+ PLGG S+ Sbjct: 523 RDTQLQLGYSNSFSHGISMNLSVGRQRMGGYKDNSDDMQTVTSLSFSFPLGGNGPRVPSL 582 Query: 507 NNNNGQRT-ATLQASRSTVAIGDLGWQLQDTEGS--------YQQRLAQLNYKSRVGSFS 557 +N+ T + Q S + D + Q T S Y+Q N + R + Sbjct: 583 SNSWTHSTDGSSQLQSSLTGMLD---EAQTTNYSLNVMRDQQYKQTTLSGNMQKRFSQTT 639 Query: 558 AGV--SQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYTENRYAG 615 G+ S+G +GA+A GG+ ++ ++FA+V A G + +Y ++ Sbjct: 640 VGLNASKGQDYWQASGNVQGAMAVHGGGITFGPYLGETFALVEAKGAEGAKVYNSSQL-- 697 Query: 616 RTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNARRASD 675 +D+G L+ + Y N+IS+D + +L S++ V P + V V F R Sbjct: 698 EINDSGYALVPAVTPYRYNRISLDPQGMDGDAELVDSERQVAPVAGAAVKVIFRTRPGKA 757 Query: 676 VTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYLQ 714 + + + A G+ LP+GA + + G G YL+ Sbjct: 758 LLIKSRMADGSELPMGADVLDENNTVVGIAGQGGQIYLR 796 >ZyraJ [NU] COG3188 P pilus assembly protein, porin PapC EcZ Escherichia coli O157:H7 EDL933 Length = 838 Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 549 YKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIY 608 Y+S G+FSAG S G S G G + GV S ++ ++FA+++A+G V I Sbjct: 631 YRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRI- 689 Query: 609 TENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHF 668 +N TD G ++ L Y N++SVD LP + L+Q+ Q+V P + V F Sbjct: 690 -QNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARF 748 Query: 669 NARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYL 713 NA V +T+ D G LP GA +TG Q+ V G+ YL Sbjct: 749 NANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYL 793 >ECs4022 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Escherichia coli O157:H7 Length = 838 Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 2/165 (1%) Query: 549 YKSRVGSFSAGVSQGGAISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIY 608 Y+S G+FSAG S G S G G + GV S ++ ++FA+++A+G V I Sbjct: 631 YRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRI- 689 Query: 609 TENRYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHF 668 +N TD G ++ L Y N++SVD LP + L+Q+ Q+V P + V F Sbjct: 690 -QNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARF 748 Query: 669 NARRASDVTLTLKDAAGNYLPIGASIRVRETGLQAPVGYDGVSYL 713 NA V +T+ D G LP GA +TG Q+ V G+ YL Sbjct: 749 NANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYL 793